Wall clock time and date at job start Tue Mar 31 2020 22:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48507 * 109.46939 * 269.99958 * 3 2 1 5 5 H 1.48505 * 109.47304 * 29.99557 * 3 2 1 6 6 H 1.48497 * 109.47263 * 149.99723 * 3 2 1 7 7 C 1.38948 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00217 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99915 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00233 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47017 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99852 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99846 * 354.90491 * 14 13 12 16 16 N 1.34775 * 120.00105 * 174.89875 * 14 13 12 17 17 C 1.47228 * 121.27112 * 184.91950 * 16 14 13 18 18 C 1.52886 * 107.95823 * 115.73108 * 17 16 14 19 19 C 1.50236 * 110.74563 * 46.86330 * 18 17 16 20 20 C 1.39256 * 118.59141 * 160.76006 * 19 18 17 21 21 C 1.38605 * 118.14937 * 179.61384 * 20 19 18 22 22 Cl 1.73594 * 120.19690 * 179.97438 * 21 20 19 23 23 N 1.32073 * 119.60659 * 359.95899 * 21 20 19 24 24 N 1.28124 * 122.07702 * 0.19019 * 23 21 20 25 25 C 1.32532 * 122.53537 * 0.03563 * 24 23 21 26 26 C 1.46738 * 121.27233 * 4.63990 * 16 14 13 27 27 H 0.97003 * 119.99505 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99673 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46721 * 299.99776 * 12 10 9 30 30 H 1.08995 * 109.47355 * 59.99932 * 12 10 9 31 31 H 0.96997 * 120.00101 * 359.97438 * 13 12 10 32 32 H 1.09004 * 109.76235 * 235.34154 * 17 16 14 33 33 H 1.08999 * 109.76751 * 356.06233 * 17 16 14 34 34 H 1.09000 * 109.22288 * 167.18480 * 18 17 16 35 35 H 1.08998 * 109.22458 * 286.53544 * 18 17 16 36 36 H 1.08000 * 120.92861 * 359.64888 * 20 19 18 37 37 H 1.09009 * 109.45983 * 344.67144 * 26 16 14 38 38 H 1.09004 * 109.46204 * 104.62242 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4471 -3.4210 0.0001 12 6 5.5606 -2.3707 0.0022 13 7 6.0489 -3.7520 0.0026 14 6 7.3739 -3.9983 0.0031 15 8 8.1634 -3.0782 -0.0903 16 7 7.8239 -5.2644 0.1072 17 6 9.2625 -5.5575 0.2184 18 6 9.5099 -6.1919 1.5872 19 6 8.5014 -7.2706 1.8640 20 6 8.7915 -8.2191 2.8414 21 6 7.8511 -9.2053 3.0949 22 17 8.1581 -10.4149 4.3017 23 7 6.7200 -9.2192 2.4131 24 7 6.4577 -8.3464 1.5126 25 6 7.2979 -7.3705 1.1995 26 6 6.8985 -6.4031 0.1203 27 1 -0.4849 0.8401 -0.0004 28 1 3.8648 -0.3634 0.0014 29 1 5.9246 -1.8565 -0.8873 30 1 5.9233 -1.8573 0.8927 31 1 5.4185 -4.4892 0.0025 32 1 9.5592 -6.2512 -0.5684 33 1 9.8347 -4.6340 0.1305 34 1 10.5109 -6.6229 1.6074 35 1 9.4349 -5.4243 2.3574 36 1 9.7229 -8.1870 3.3871 37 1 5.8862 -6.0462 0.3099 38 1 6.9303 -6.9080 -0.8453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349081520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:07 Heat of formation + Delta-G solvation = 6.432596 kcal Electronic energy + Delta-G solvation = -26049.285671 eV Core-core repulsion = 21953.990551 eV Total energy + Delta-G solvation = -4095.295121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93527 -40.28963 -38.55985 -37.49515 -37.02359 -34.81554 -34.37614 -33.78087 -32.79214 -31.83029 -31.17463 -28.14230 -27.04883 -25.37353 -24.25800 -23.98465 -22.33826 -19.93521 -19.68203 -19.06051 -18.47799 -17.71670 -17.39805 -16.86482 -16.29655 -15.87026 -15.61130 -15.48481 -15.09503 -14.79106 -14.57939 -14.46338 -14.07174 -13.75013 -13.60751 -13.16453 -13.06840 -12.88245 -12.51418 -12.39167 -12.18779 -12.15769 -12.06123 -11.92396 -11.61508 -11.25428 -10.66058 -10.40215 -10.31908 -10.17113 -10.07652 -9.90252 -9.71934 -9.25780 -8.81516 -8.80074 -8.32503 -6.42212 -3.95008 0.14363 0.18878 1.12125 2.27843 2.83597 2.97712 3.02530 3.05422 3.11137 3.43226 3.53634 3.74975 3.76604 3.93676 4.01892 4.02309 4.14189 4.49234 4.54351 4.68364 4.83432 4.86289 5.04213 5.12422 5.12987 5.23630 5.35409 5.42464 5.55421 5.61053 5.72977 5.78565 6.01829 6.48032 6.69329 7.42524 7.85413 7.98971 8.06518 8.40507 8.49293 8.80035 9.27789 9.60720 10.69857 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002323 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.431784 B =12051.418138 C =13109.228499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.578 6.578 12 C 0.124 3.876 13 N -0.723 5.723 14 C 0.717 3.283 15 O -0.587 6.587 16 N -0.634 5.634 17 C 0.128 3.872 18 C -0.101 4.101 19 C -0.050 4.050 20 C -0.109 4.109 21 C 0.109 3.891 22 Cl -0.006 7.006 23 N -0.223 5.223 24 N -0.205 5.205 25 C 0.063 3.937 26 C 0.165 3.835 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.114 0.886 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.457 -14.239 4.214 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.213 5.213 10 C 0.222 3.778 11 O -0.463 6.463 12 C -0.004 4.004 13 N -0.382 5.382 14 C 0.418 3.582 15 O -0.465 6.465 16 N -0.372 5.372 17 C 0.005 3.995 18 C -0.139 4.139 19 C -0.061 4.061 20 C -0.138 4.138 21 C -0.060 4.060 22 Cl 0.022 6.978 23 N -0.069 5.069 24 N -0.050 5.050 25 C -0.081 4.081 26 C 0.039 3.961 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.248 0.752 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.180 0.820 37 H 0.132 0.868 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.931 -14.931 3.998 26.831 hybrid contribution 1.526 1.404 0.622 2.165 sum 23.457 -13.527 4.620 27.469 Atomic orbital electron populations 1.69623 1.05715 1.27830 1.48031 1.25074 0.95541 0.98183 0.97124 0.86669 0.79892 0.83763 0.79146 1.19364 1.19989 1.19231 1.19444 0.78910 0.96827 1.48687 0.86033 1.42107 1.07715 1.06099 1.65334 1.19620 0.88007 0.84935 0.85196 1.90549 1.69173 1.30879 1.55668 1.20859 0.93609 0.82559 1.03401 1.44959 1.05149 1.09670 1.78454 1.15577 0.82799 0.82044 0.77766 1.90915 1.55206 1.42251 1.58168 1.47143 1.07018 1.04129 1.78956 1.21509 0.80620 1.02267 0.95078 1.20976 0.97116 0.95811 1.00020 1.20580 0.95668 0.96012 0.93888 1.22244 1.00799 0.93051 0.97734 1.23498 0.94207 0.93207 0.95130 1.98434 1.94380 1.53624 1.51351 1.72954 1.15213 1.16943 1.01779 1.73240 1.25174 0.99259 1.07336 1.22778 0.91594 0.96296 0.97397 1.20098 0.94803 0.85362 0.95822 0.91362 0.79231 0.89533 0.89836 0.75158 0.90427 0.87077 0.88060 0.88340 0.82043 0.86782 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.79 13.96 55.50 0.77 -24.01 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.76 27.74 -169.99 -4.71 14.04 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 7 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.57 -13.12 5.09 -10.96 -0.06 -13.18 16 10 C 0.44 9.37 7.85 -10.99 -0.09 9.28 16 11 O -0.58 -14.34 15.24 5.54 0.08 -14.26 16 12 C 0.12 2.06 6.16 -5.19 -0.03 2.03 16 13 N -0.72 -11.06 5.44 -66.41 -0.36 -11.42 16 14 C 0.72 10.18 8.32 -86.92 -0.72 9.45 16 15 O -0.59 -9.83 15.84 5.28 0.08 -9.75 16 16 N -0.63 -6.64 2.94 -180.29 -0.53 -7.17 16 17 C 0.13 0.94 6.45 -3.70 -0.02 0.92 16 18 C -0.10 -0.57 5.91 -28.17 -0.17 -0.74 16 19 C -0.05 -0.40 5.77 -104.61 -0.60 -1.00 16 20 C -0.11 -0.79 9.62 -39.07 -0.38 -1.17 16 21 C 0.11 1.05 7.37 -17.31 -0.13 0.93 16 22 Cl -0.01 -0.05 29.14 -51.86 -1.51 -1.56 16 23 N -0.22 -2.79 11.49 32.86 0.38 -2.42 16 24 N -0.21 -2.58 11.38 33.45 0.38 -2.19 16 25 C 0.06 0.64 6.75 -82.61 -0.56 0.09 16 26 C 0.16 1.60 6.41 -5.24 -0.03 1.57 16 27 H 0.28 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.41 6.26 5.02 -40.82 -0.21 6.05 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.90 7.06 -51.93 -0.37 0.53 16 34 H 0.10 0.27 8.12 -51.93 -0.42 -0.15 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.11 1.24 5.80 -51.92 -0.30 0.94 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -34.03 341.49 -6.93 -40.95 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -3.62 Total: 11.97 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: -2.98 Total: 13.85 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.59 Total: -60.40 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.17 Total: -24.01 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.04 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.51 Total: -1.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.03 -6.93 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349081520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.385 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds