Wall clock time and date at job start Tue Mar 31 2020 22:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38456 * 119.89507 * 90.00061 * 12 9 7 14 14 C 1.38209 * 120.34250 * 180.02562 * 13 12 9 15 15 C 1.38321 * 120.11634 * 359.97438 * 14 13 12 16 16 F 1.35097 * 120.10643 * 180.02562 * 15 14 13 17 17 C 1.39822 * 119.77684 * 359.97438 * 15 14 13 18 18 C 1.47690 * 120.16169 * 179.97438 * 17 15 14 19 19 O 1.21575 * 120.00229 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00157 * 179.97438 * 18 17 15 21 21 C 1.46494 * 120.00496 * 179.97438 * 20 18 17 22 22 H 1.09002 * 115.55162 * 9.32899 * 21 20 18 23 23 C 1.53005 * 117.50298 * 223.61934 * 21 20 18 24 24 C 1.52989 * 59.99832 * 252.50905 * 23 21 20 25 25 C 1.53002 * 138.58670 * 130.88838 * 24 23 21 26 26 C 1.52999 * 138.58708 * 229.10408 * 24 23 21 27 27 C 1.37858 * 119.89124 * 269.72169 * 12 9 7 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.82728 * 359.97239 * 13 12 9 30 30 H 1.08001 * 119.93865 * 179.97438 * 14 13 12 31 31 H 0.97003 * 119.99538 * 359.97438 * 20 18 17 32 32 H 1.08998 * 117.49643 * 0.02562 * 23 21 20 33 33 H 1.08998 * 117.49454 * 145.02004 * 23 21 20 34 34 H 1.08995 * 117.49994 * 238.38356 * 25 24 23 35 35 H 1.09002 * 117.49499 * 23.41138 * 25 24 23 36 36 H 1.08993 * 117.50006 * 336.59659 * 26 24 23 37 37 H 1.09000 * 117.49579 * 121.59897 * 26 24 23 38 38 H 1.08009 * 120.05931 * 0.02562 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 6 2.3201 -4.0132 -0.0120 13 6 2.7886 -4.5251 1.1861 14 6 3.7277 -5.5391 1.1924 15 6 4.2055 -6.0500 -0.0008 16 9 5.1231 -7.0416 0.0056 17 6 3.7350 -5.5375 -1.2136 18 6 4.2398 -6.0763 -2.4927 19 8 5.0669 -6.9674 -2.4929 20 7 3.7836 -5.5803 -3.6599 21 6 4.2846 -6.1143 -4.9287 22 1 4.8997 -7.0109 -4.8512 23 6 4.6342 -5.1102 -6.0290 24 6 3.3825 -5.9805 -6.1570 25 6 1.8955 -5.8121 -6.4756 26 6 2.7153 -6.8855 -7.1947 27 6 2.7826 -4.5161 -1.2094 28 1 -0.4850 0.8401 -0.0004 29 1 2.4190 -4.1293 2.1205 30 1 4.0890 -5.9333 2.1308 31 1 3.1234 -4.8696 -3.6598 32 1 4.4917 -4.0523 -5.8087 33 1 5.4794 -5.3462 -6.6755 34 1 1.1790 -6.1449 -5.7247 35 1 1.6004 -4.9346 -7.0511 36 1 2.9594 -6.7141 -8.2431 37 1 2.5384 -7.9245 -6.9169 38 1 2.4123 -4.1177 -2.1426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548723559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:04 Heat of formation + Delta-G solvation = -79.604440 kcal Electronic energy + Delta-G solvation = -26534.510513 eV Core-core repulsion = 22385.315540 eV Total energy + Delta-G solvation = -4149.194973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.92678 -40.19136 -38.66509 -37.80523 -35.46533 -34.40460 -34.17386 -33.24499 -32.18681 -30.66806 -30.60965 -26.29676 -24.55524 -23.11548 -22.64253 -22.14783 -20.75415 -19.77321 -18.94244 -18.24507 -17.40499 -16.91328 -16.59170 -16.09472 -15.88291 -15.77699 -15.20318 -15.07994 -14.76410 -14.67279 -14.57038 -14.10097 -13.98255 -13.64926 -13.11362 -12.91142 -12.68904 -12.45646 -12.15987 -12.03450 -11.71525 -11.56839 -11.37302 -11.29544 -10.95658 -10.71418 -10.48768 -10.44554 -10.39139 -10.17236 -10.14586 -9.79969 -9.37120 -9.24417 -9.13076 -8.90741 -8.80880 -6.85955 -5.50790 0.60030 0.95585 1.88530 2.62404 2.76210 3.00837 3.06060 3.11140 3.42664 3.61415 3.67578 3.95673 4.06787 4.07137 4.41394 4.50370 4.59634 4.61907 4.73361 5.01806 5.15170 5.22020 5.22958 5.40046 5.42225 5.45116 5.47654 5.55265 5.64293 5.65825 5.69472 5.74105 5.86444 5.94201 6.03616 6.08272 6.32928 6.68805 6.70534 7.16078 7.32433 7.77951 8.05638 8.71799 10.08830 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.004009 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.841361 B = 6982.945334 C = 8550.829064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.133 3.867 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.003 5.003 8 H 0.106 0.894 9 S 2.604 3.396 10 O -0.978 6.978 11 O -0.980 6.980 12 C -0.663 4.663 13 C 0.031 3.969 14 C -0.188 4.188 15 C 0.193 3.807 16 F -0.114 7.114 17 C -0.204 4.204 18 C 0.571 3.429 19 O -0.529 6.529 20 N -0.699 5.699 21 C 0.134 3.866 22 H 0.140 0.860 23 C -0.137 4.137 24 C -0.247 4.247 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.035 3.965 28 H 0.294 0.706 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -8.266 -7.665 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.136 5.136 8 H 0.124 0.876 9 S 2.783 3.217 10 O -0.975 6.975 11 O -0.977 6.977 12 C -0.743 4.743 13 C 0.012 3.988 14 C -0.207 4.207 15 C 0.173 3.827 16 F -0.092 7.092 17 C -0.209 4.209 18 C 0.359 3.641 19 O -0.406 6.406 20 N -0.349 5.349 21 C 0.028 3.972 22 H 0.157 0.843 23 C -0.175 4.175 24 C -0.248 4.248 25 C -0.163 4.163 26 C -0.161 4.161 27 C 0.016 3.984 28 H 0.105 0.895 29 H 0.175 0.825 30 H 0.166 0.834 31 H 0.244 0.756 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.289 -9.098 -7.652 13.449 hybrid contribution 1.111 1.040 -0.019 1.522 sum 7.399 -8.058 -7.671 13.361 Atomic orbital electron populations 1.69879 1.06740 1.31187 1.39070 1.24762 0.94571 1.00783 0.88423 0.86135 0.79861 0.79258 0.80014 1.18709 1.19939 1.18650 1.30049 1.05944 1.09748 1.67900 0.87574 1.01247 0.72973 0.73857 0.73603 1.93357 1.71897 1.87530 1.44712 1.93347 1.71950 1.87603 1.44790 1.31819 1.22537 1.22308 0.97642 1.21133 0.89345 0.90155 0.98185 1.21273 1.01592 1.00814 0.97024 1.17818 0.86477 0.85142 0.93295 1.91587 1.62690 1.57641 1.97264 1.19976 1.04819 1.03594 0.92522 1.17922 0.81079 0.81857 0.83208 1.90806 1.32532 1.29853 1.87423 1.45312 1.45050 1.40250 1.04294 1.21333 0.98489 0.99296 0.78070 0.84255 1.23271 0.96086 0.97461 1.00715 1.22072 0.94160 1.06958 1.01659 1.22691 0.90476 1.00751 1.02387 1.22651 1.01336 0.95998 0.96102 1.21004 0.89188 0.89846 0.98338 0.89531 0.82456 0.83352 0.75570 0.87897 0.87710 0.88186 0.88201 0.88428 0.88549 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.85 13.19 55.43 0.73 -22.12 16 2 C 0.13 3.43 5.46 -17.82 -0.10 3.33 16 3 Si 0.92 19.09 29.54 -169.99 -5.02 14.06 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 7 C -1.00 -25.16 9.58 30.60 0.29 -24.86 16 8 H 0.11 2.41 7.81 -52.49 -0.41 2.00 16 9 S 2.60 62.52 4.65 -107.50 -0.50 62.02 16 10 O -0.98 -25.75 17.15 -57.17 -0.98 -26.73 16 11 O -0.98 -25.45 17.14 -57.17 -0.98 -26.43 16 12 C -0.66 -12.51 5.81 -39.64 -0.23 -12.74 16 13 C 0.03 0.50 9.51 -39.51 -0.38 0.12 16 14 C -0.19 -2.70 10.01 -39.56 -0.40 -3.09 16 15 C 0.19 3.10 7.29 -38.96 -0.28 2.82 16 16 F -0.11 -1.89 15.55 2.25 0.04 -1.85 16 17 C -0.20 -3.35 5.88 -104.91 -0.62 -3.97 16 18 C 0.57 9.20 7.77 -12.40 -0.10 9.10 16 19 O -0.53 -9.77 14.91 5.30 0.08 -9.70 16 20 N -0.70 -9.33 5.52 -54.80 -0.30 -9.63 16 21 C 0.13 1.58 6.43 -67.93 -0.44 1.14 16 22 H 0.14 1.73 7.40 -51.93 -0.38 1.35 16 23 C -0.14 -1.33 10.46 -26.73 -0.28 -1.61 16 24 C -0.25 -2.52 5.60 -154.52 -0.86 -3.39 16 25 C -0.13 -1.20 10.53 -26.72 -0.28 -1.48 16 26 C -0.12 -1.06 10.53 -26.72 -0.28 -1.34 16 27 C 0.04 0.60 9.01 -39.19 -0.35 0.25 16 28 H 0.29 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.16 2.36 7.60 -52.49 -0.40 1.96 16 30 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.41 4.98 6.86 -40.82 -0.28 4.70 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.15 2.31 5.95 -52.48 -0.31 1.99 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -33.00 353.67 -9.79 -42.79 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.88 Total: 7.98 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -4.30 Total: -35.72 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.43 Total: -31.75 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.88 Total: -62.85 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 62.52 SS G_CDS: -0.50 Total: 62.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.00 -9.79 -42.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548723559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.818 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds