Wall clock time and date at job start Tue Mar 31 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99468 * 2 1 4 4 C 1.38551 * 120.00235 * 0.23665 * 3 2 1 5 5 C 1.39199 * 119.82358 * 180.27410 * 4 3 2 6 6 C 1.48469 * 120.08888 * 179.76316 * 5 4 3 7 7 N 1.34052 * 126.67368 * 359.68594 * 6 5 4 8 8 N 1.28982 * 107.26639 * 180.02562 * 7 6 5 9 9 N 1.28725 * 108.94737 * 359.97438 * 8 7 6 10 10 H 0.96998 * 125.34260 * 180.02562 * 9 8 7 11 11 N 1.28874 * 109.31649 * 359.97438 * 9 8 7 12 12 C 1.39343 * 119.82042 * 359.49103 * 5 4 3 13 13 C 1.38038 * 119.99135 * 0.24816 * 12 5 4 14 14 C 1.38237 * 120.17838 * 0.02562 * 13 12 5 15 15 S 1.76197 * 119.91030 * 180.02562 * 14 13 12 16 16 O 1.42095 * 106.40489 * 228.54073 * 15 14 13 17 17 O 1.42096 * 106.40274 * 1.46129 * 15 14 13 18 18 N 1.65607 * 107.21837 * 114.99849 * 15 14 13 19 19 C 1.46500 * 119.99516 * 64.99954 * 18 15 14 20 20 C 1.50700 * 109.46757 * 164.99997 * 19 18 15 21 21 H 1.07998 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00142 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00237 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99683 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47273 * 90.00057 * 24 22 20 26 26 H 1.48509 * 109.47034 * 210.00065 * 24 22 20 27 27 H 1.48505 * 109.47436 * 329.99917 * 24 22 20 28 28 H 1.09002 * 109.47044 * 60.00216 * 1 2 3 29 29 H 1.09002 * 109.47105 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47522 * 300.00120 * 1 2 3 31 31 H 1.08002 * 120.08480 * 0.03712 * 4 3 2 32 32 H 1.07997 * 120.00410 * 180.23292 * 12 5 4 33 33 H 1.08003 * 119.90464 * 180.02562 * 13 12 5 34 34 H 0.96991 * 120.00089 * 245.00484 * 18 15 14 35 35 H 1.08997 * 109.47230 * 285.00177 * 19 18 15 36 36 H 1.08996 * 109.47260 * 45.00249 * 19 18 15 37 37 H 0.97004 * 120.00366 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3730 0.0050 5 6 1.9269 3.6113 -0.0008 6 6 1.1240 4.8602 -0.0009 7 7 -0.2134 4.9522 -0.0017 8 7 -0.5108 6.2072 -0.0019 9 7 0.5775 6.8947 -0.0009 10 1 0.6294 7.8632 -0.0004 11 7 1.5874 6.0941 0.0007 12 6 3.3188 3.6757 -0.0009 13 6 4.0634 2.5133 -0.0003 14 6 3.4319 1.2836 -0.0003 15 16 4.3891 -0.1956 0.0011 16 8 3.8503 -1.0233 -1.0205 17 8 5.7512 0.2078 0.0368 18 7 4.0931 -0.9698 1.4349 19 6 2.7529 -1.4849 1.7260 20 6 2.8248 -2.4449 2.8854 21 1 3.7737 -2.6504 3.3584 22 6 1.6791 -3.0610 3.3424 23 7 1.7416 -3.8983 4.3545 24 14 0.0379 -2.7061 2.5239 25 1 -0.1823 -3.6715 1.4172 26 1 -1.0528 -2.8409 3.5227 27 1 0.0440 -1.3238 1.9811 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2126 2.3180 0.0094 32 1 3.8151 4.6349 -0.0015 33 1 5.1422 2.5649 0.0001 34 1 4.8070 -1.0820 2.0818 35 1 2.0925 -0.6561 1.9808 36 1 2.3643 -2.0027 0.8491 37 1 0.9355 -4.3315 4.6763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591504197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:41 Heat of formation + Delta-G solvation = 52.282361 kcal Electronic energy + Delta-G solvation = -27424.960046 eV Core-core repulsion = 23333.696826 eV Total energy + Delta-G solvation = -4091.263219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.85400 -40.36630 -37.84055 -36.62799 -35.34208 -34.79131 -34.64962 -33.91536 -32.15451 -31.19858 -30.38908 -27.51958 -27.26973 -25.31322 -24.89892 -22.47834 -22.06827 -21.94089 -19.68584 -19.24965 -18.40089 -17.68762 -17.52891 -16.94302 -16.35844 -16.03503 -16.02067 -15.57424 -15.27129 -14.61305 -14.45630 -14.33586 -13.90627 -13.45586 -13.25026 -13.11447 -12.76754 -12.59883 -12.41270 -11.98069 -11.88125 -11.83262 -11.72340 -11.64713 -11.57919 -11.47665 -11.45160 -10.97693 -10.86713 -10.63274 -10.37565 -9.85219 -9.42437 -9.31341 -8.85235 -8.54139 -8.37964 -6.14704 -4.15204 0.12212 0.76759 0.96229 1.19584 1.83317 1.89653 3.08722 3.22592 3.25796 3.26532 3.30264 3.32824 3.70246 3.79926 4.13576 4.34369 4.52059 4.68818 4.84273 4.90176 5.08969 5.14727 5.18996 5.26062 5.27480 5.36519 5.49276 5.64261 5.79664 5.90875 5.98856 6.05898 6.33548 6.42648 6.99707 7.08231 7.09901 7.47344 7.74176 7.91866 8.42281 8.87420 9.43451 10.97556 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.004282 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.383817 B = 6538.121500 C = 8006.660904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.289 6.289 3 C 0.230 3.770 4 C -0.189 4.189 5 C 0.067 3.933 6 C 0.214 3.786 7 N -0.261 5.261 8 N -0.047 5.047 9 N -0.226 5.226 10 H 0.477 0.523 11 N -0.283 5.283 12 C -0.145 4.145 13 C 0.013 3.987 14 C -0.690 4.690 15 S 2.696 3.304 16 O -0.950 6.950 17 O -0.977 6.977 18 N -1.093 6.093 19 C 0.225 3.775 20 C -0.529 4.529 21 H 0.080 0.920 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.866 3.134 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.249 1.249 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.415 0.585 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 20.932 -9.328 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.200 6.200 3 C 0.181 3.819 4 C -0.210 4.210 5 C 0.063 3.937 6 C -0.066 4.066 7 N -0.134 5.134 8 N -0.042 5.042 9 N -0.072 5.072 10 H 0.331 0.669 11 N -0.135 5.135 12 C -0.166 4.166 13 C -0.006 4.006 14 C -0.776 4.776 15 S 2.782 3.218 16 O -0.940 6.940 17 O -0.967 6.967 18 N -0.856 5.856 19 C 0.100 3.900 20 C -0.569 4.569 21 H 0.098 0.902 22 C -0.131 4.131 23 N -0.534 5.534 24 Si 0.692 3.308 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.173 1.173 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.250 0.750 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.797 20.730 -10.015 23.191 hybrid contribution -1.074 1.166 0.400 1.634 sum -3.871 21.895 -9.615 24.225 Atomic orbital electron populations 1.23412 0.77098 1.05161 1.01617 1.86407 1.22785 1.24704 1.86132 1.18195 0.90478 0.85126 0.88137 1.21262 1.01213 0.90561 1.07978 1.17147 0.91716 0.86723 0.98099 1.23673 0.88912 0.91854 1.02165 1.76122 1.12220 1.07955 1.17129 1.78943 1.12332 0.98347 1.14608 1.47763 1.00905 1.12712 1.45814 0.66871 1.74941 1.16144 1.01210 1.21175 1.21100 0.91689 0.99527 1.04282 1.20744 1.00803 0.89355 0.89654 1.30654 1.04363 1.21107 1.21436 1.01784 0.72668 0.73327 0.73990 1.93582 1.80052 1.64553 1.55783 1.93525 1.32361 1.83668 1.87173 1.55216 1.21174 1.71407 1.37759 1.19509 0.78072 0.94634 0.97751 1.21150 0.96610 1.24732 1.14382 0.90153 1.24861 0.99057 0.94469 0.94700 1.69883 1.29169 1.28694 1.25638 0.87075 0.83657 0.80314 0.79723 1.19725 1.21395 1.17331 0.92059 0.87363 0.91550 0.83291 0.84039 0.82541 0.75010 0.96070 0.94447 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.14 101.05 0.82 1.11 16 2 O -0.29 -4.97 5.52 -29.49 -0.16 -5.14 16 3 C 0.23 3.66 6.30 -39.26 -0.25 3.41 16 4 C -0.19 -2.58 8.69 -39.11 -0.34 -2.92 16 5 C 0.07 0.85 5.87 -104.91 -0.62 0.23 16 6 C 0.21 2.53 7.94 -156.30 -1.24 1.29 16 7 N -0.26 -3.19 12.23 32.16 0.39 -2.79 16 8 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 9 N -0.23 -1.56 7.90 60.35 0.48 -1.09 16 10 H 0.48 0.85 8.96 -340.38 -3.05 -2.20 16 11 N -0.28 -2.73 12.08 32.17 0.39 -2.34 16 12 C -0.14 -1.70 9.70 -39.24 -0.38 -2.08 16 13 C 0.01 0.18 9.53 -39.65 -0.38 -0.20 16 14 C -0.69 -10.98 5.90 -39.38 -0.23 -11.21 16 15 S 2.70 49.32 5.46 -107.50 -0.59 48.73 16 16 O -0.95 -20.04 16.76 -62.58 -1.05 -21.09 16 17 O -0.98 -18.08 16.96 -57.18 -0.97 -19.05 16 18 N -1.09 -21.71 5.99 -11.66 -0.07 -21.78 16 19 C 0.22 5.13 3.32 -5.19 -0.02 5.12 16 20 C -0.53 -14.30 9.83 -34.44 -0.34 -14.64 16 21 H 0.08 2.31 7.90 -52.49 -0.41 1.90 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 23 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 24 Si 0.87 19.53 26.78 -169.99 -4.55 14.97 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.25 -4.85 3.93 56.52 0.22 -4.62 16 28 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.11 1.45 6.98 -51.93 -0.36 1.09 16 30 H 0.07 0.83 7.41 -51.93 -0.38 0.44 16 31 H 0.15 1.81 6.12 -52.49 -0.32 1.49 16 32 H 0.14 1.30 7.88 -52.49 -0.41 0.89 16 33 H 0.16 1.74 7.32 -52.48 -0.38 1.36 16 34 H 0.41 7.65 8.54 -34.47 -0.29 7.36 16 35 H 0.02 0.47 5.70 -51.93 -0.30 0.17 16 36 H 0.04 0.88 6.55 -51.93 -0.34 0.54 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -35.49 325.24 -8.68 -44.17 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.97 Total: 3.81 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.07 Total: -17.99 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 2.78 Total: -53.32 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -2.18 Total: -45.27 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.55 Total: 14.97 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.59 Total: 48.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.49 -8.68 -44.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591504197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.451 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds