Wall clock time and date at job start Tue Mar 31 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99468 * 2 1 4 4 C 1.38551 * 120.00235 * 0.23665 * 3 2 1 5 5 C 1.39199 * 119.82358 * 180.27410 * 4 3 2 6 6 C 1.48469 * 120.08888 * 179.76316 * 5 4 3 7 7 N 1.34052 * 126.67368 * 359.68594 * 6 5 4 8 8 N 1.28982 * 107.26639 * 180.02562 * 7 6 5 9 9 N 1.28725 * 108.94737 * 359.97438 * 8 7 6 10 10 H 0.96998 * 125.34260 * 180.02562 * 9 8 7 11 11 N 1.28874 * 109.31649 * 359.97438 * 9 8 7 12 12 C 1.39343 * 119.82042 * 359.49103 * 5 4 3 13 13 C 1.38038 * 119.99135 * 0.24816 * 12 5 4 14 14 C 1.38237 * 120.17838 * 0.02562 * 13 12 5 15 15 S 1.76197 * 119.91030 * 180.02562 * 14 13 12 16 16 O 1.42095 * 106.40489 * 228.54073 * 15 14 13 17 17 O 1.42096 * 106.40274 * 1.46129 * 15 14 13 18 18 N 1.65607 * 107.21837 * 114.99849 * 15 14 13 19 19 C 1.46500 * 119.99516 * 64.99954 * 18 15 14 20 20 C 1.50700 * 109.46757 * 164.99997 * 19 18 15 21 21 H 1.07998 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00142 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00237 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99683 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47273 * 90.00057 * 24 22 20 26 26 H 1.48509 * 109.47034 * 210.00065 * 24 22 20 27 27 H 1.48505 * 109.47436 * 329.99917 * 24 22 20 28 28 H 1.09002 * 109.47044 * 60.00216 * 1 2 3 29 29 H 1.09002 * 109.47105 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47522 * 300.00120 * 1 2 3 31 31 H 1.08002 * 120.08480 * 0.03712 * 4 3 2 32 32 H 1.07997 * 120.00410 * 180.23292 * 12 5 4 33 33 H 1.08003 * 119.90464 * 180.02562 * 13 12 5 34 34 H 0.96991 * 120.00089 * 245.00484 * 18 15 14 35 35 H 1.08997 * 109.47230 * 285.00177 * 19 18 15 36 36 H 1.08996 * 109.47260 * 45.00249 * 19 18 15 37 37 H 0.97004 * 120.00366 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3730 0.0050 5 6 1.9269 3.6113 -0.0008 6 6 1.1240 4.8602 -0.0009 7 7 -0.2134 4.9522 -0.0017 8 7 -0.5108 6.2072 -0.0019 9 7 0.5775 6.8947 -0.0009 10 1 0.6294 7.8632 -0.0004 11 7 1.5874 6.0941 0.0007 12 6 3.3188 3.6757 -0.0009 13 6 4.0634 2.5133 -0.0003 14 6 3.4319 1.2836 -0.0003 15 16 4.3891 -0.1956 0.0011 16 8 3.8503 -1.0233 -1.0205 17 8 5.7512 0.2078 0.0368 18 7 4.0931 -0.9698 1.4349 19 6 2.7529 -1.4849 1.7260 20 6 2.8248 -2.4449 2.8854 21 1 3.7737 -2.6504 3.3584 22 6 1.6791 -3.0610 3.3424 23 7 1.7416 -3.8983 4.3545 24 14 0.0379 -2.7061 2.5239 25 1 -0.1823 -3.6715 1.4172 26 1 -1.0528 -2.8409 3.5227 27 1 0.0440 -1.3238 1.9811 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2126 2.3180 0.0094 32 1 3.8151 4.6349 -0.0015 33 1 5.1422 2.5649 0.0001 34 1 4.8070 -1.0820 2.0818 35 1 2.0925 -0.6561 1.9808 36 1 2.3643 -2.0027 0.8491 37 1 0.9355 -4.3315 4.6763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591504197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:40 Heat of formation + Delta-G solvation = 22.335643 kcal Electronic energy + Delta-G solvation = -27426.258633 eV Core-core repulsion = 23333.696826 eV Total energy + Delta-G solvation = -4092.561806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.083 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -45.60206 -41.43788 -38.92359 -38.09413 -36.86461 -36.42036 -35.57191 -34.75259 -34.17420 -32.15102 -31.40649 -29.26630 -28.46769 -26.20521 -25.72031 -23.93638 -23.40253 -23.02066 -20.64969 -20.45145 -19.68862 -19.16646 -18.26679 -18.26256 -17.82082 -17.49487 -17.28524 -16.72366 -16.53067 -16.09100 -15.63114 -15.34601 -15.18635 -14.91738 -14.55421 -14.34266 -14.20007 -14.08057 -13.51660 -13.43386 -13.17396 -13.03026 -12.94475 -12.80201 -12.74954 -12.61714 -12.46457 -12.26708 -12.21745 -11.94398 -11.83165 -11.53998 -11.43566 -10.81633 -10.31786 -10.17126 -9.54643 -8.26414 -6.33635 -0.87775 -0.46042 0.03065 0.18990 0.98120 1.29502 1.39806 1.46132 1.55713 2.05712 2.12755 2.39627 2.41838 2.45929 2.75198 2.98568 3.08588 3.34781 3.74663 3.84385 3.95927 4.10879 4.24589 4.29994 4.32980 4.34171 4.55371 4.60177 4.68131 4.80426 4.92249 5.10747 5.17345 5.23878 5.45234 5.49905 5.52580 6.03876 6.27175 6.31345 6.72581 6.98213 7.30132 8.88450 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.004282 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.383817 B = 6538.121500 C = 8006.660904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.320 6.320 3 C 0.214 3.786 4 C -0.189 4.189 5 C 0.071 3.929 6 C 0.198 3.802 7 N -0.285 5.285 8 N -0.052 5.052 9 N -0.194 5.194 10 H 0.497 0.503 11 N -0.275 5.275 12 C -0.133 4.133 13 C 0.014 3.986 14 C -0.704 4.704 15 S 2.711 3.289 16 O -0.983 6.983 17 O -0.983 6.983 18 N -1.102 6.102 19 C 0.238 3.762 20 C -0.541 4.541 21 H 0.044 0.956 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.204 1.204 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.418 0.582 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 24.528 -10.618 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.232 6.232 3 C 0.166 3.834 4 C -0.211 4.211 5 C 0.067 3.933 6 C -0.082 4.082 7 N -0.157 5.157 8 N -0.046 5.046 9 N -0.045 5.045 10 H 0.357 0.643 11 N -0.127 5.127 12 C -0.154 4.154 13 C -0.005 4.005 14 C -0.794 4.794 15 S 2.802 3.198 16 O -0.973 6.973 17 O -0.973 6.973 18 N -0.863 5.863 19 C 0.113 3.887 20 C -0.581 4.581 21 H 0.062 0.938 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.749 3.251 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.126 1.126 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.253 0.747 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.047 24.326 -11.311 27.131 hybrid contribution -0.599 0.245 0.804 1.032 sum -4.646 24.571 -10.507 27.124 Atomic orbital electron populations 1.23708 0.75689 1.05853 1.03654 1.86341 1.24540 1.25746 1.86552 1.18335 0.90521 0.85512 0.89079 1.21366 1.01823 0.90155 1.07713 1.17323 0.92279 0.86943 0.96728 1.23530 0.88925 0.92123 1.03651 1.76106 1.12536 1.09009 1.18039 1.78903 1.12867 0.97957 1.14908 1.47842 0.99796 1.13626 1.43279 0.64280 1.74898 1.16582 1.00719 1.20537 1.21382 0.91350 1.00156 1.02540 1.21021 1.01832 0.88760 0.88896 1.30211 1.04366 1.20344 1.24457 1.01011 0.72523 0.73570 0.72727 1.93535 1.80576 1.66522 1.56653 1.93508 1.33006 1.83835 1.86985 1.55172 1.20273 1.72542 1.38302 1.19223 0.79784 0.94086 0.95609 1.21463 0.95411 1.25692 1.15499 0.93789 1.25894 1.03767 0.94027 0.95236 1.70049 1.30488 1.30334 1.27717 0.86140 0.77603 0.82735 0.78591 1.19332 1.21433 1.12640 0.89290 0.87339 0.90440 0.81956 0.81129 0.80798 0.74737 0.94430 0.94906 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.11 8.14 113.37 0.92 1.03 16 2 O -0.32 -10.46 5.52 -82.94 -0.46 -10.92 16 3 C 0.21 6.43 6.30 22.48 0.14 6.57 16 4 C -0.19 -4.68 8.69 22.58 0.20 -4.49 16 5 C 0.07 1.58 5.87 -20.05 -0.12 1.46 16 6 C 0.20 4.03 7.94 137.38 1.09 5.12 16 7 N -0.28 -6.12 12.23 -52.18 -0.64 -6.76 16 8 N -0.05 -0.86 13.47 37.02 0.50 -0.36 16 9 N -0.19 -1.97 7.90 37.02 0.29 -1.68 16 10 H 0.50 -0.17 8.96 -347.55 -3.12 -3.29 16 11 N -0.27 -4.25 12.08 -52.12 -0.63 -4.88 16 12 C -0.13 -2.67 9.70 22.49 0.22 -2.45 16 13 C 0.01 0.33 9.53 22.22 0.21 0.54 16 14 C -0.70 -21.37 5.90 22.40 0.13 -21.24 16 15 S 2.71 98.61 5.46 -56.49 -0.31 98.30 16 16 O -0.98 -41.72 16.76 -122.83 -2.06 -43.78 16 17 O -0.98 -35.89 16.96 -128.00 -2.17 -38.06 16 18 N -1.10 -44.35 5.99 -190.80 -1.14 -45.49 16 19 C 0.24 10.92 3.32 85.63 0.28 11.20 16 20 C -0.54 -30.14 9.83 25.60 0.25 -29.89 16 21 H 0.04 2.68 7.90 -2.91 -0.02 2.66 16 22 C 0.01 0.50 5.47 84.66 0.46 0.97 16 23 N -0.95 -57.77 13.96 21.45 0.30 -57.47 16 24 Si 0.93 40.04 26.78 68.60 1.84 41.87 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.20 -7.24 3.93 99.48 0.39 -6.85 16 28 H 0.09 1.63 7.67 -2.39 -0.02 1.61 16 29 H 0.11 2.60 6.98 -2.39 -0.02 2.58 16 30 H 0.08 1.68 7.41 -2.39 -0.02 1.66 16 31 H 0.16 3.48 6.12 -2.91 -0.02 3.46 16 32 H 0.17 2.38 7.88 -2.91 -0.02 2.36 16 33 H 0.17 3.41 7.32 -2.91 -0.02 3.39 16 34 H 0.42 15.94 8.54 -96.75 -0.83 15.12 16 35 H 0.04 1.62 5.70 -2.39 -0.01 1.60 16 36 H 0.03 1.55 6.55 -2.39 -0.02 1.53 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -78.73 325.24 -3.76 -82.49 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -3.07 Total: 17.89 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.79 Total: -31.17 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -1.32 Total: -116.63 kcal Atomic # 8 Polarization: -88.07 SS G_CDS: -4.69 Total: -92.76 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.84 Total: 41.87 kcal Atomic # 16 Polarization: 98.61 SS G_CDS: -0.31 Total: 98.30 kcal Total: -78.73 -3.76 -82.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591504197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.828 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds