Wall clock time and date at job start Tue Mar 31 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46793 * 264.97827 * 3 2 1 5 5 H 1.48497 * 109.47178 * 24.97817 * 3 2 1 6 6 H 1.48503 * 109.47117 * 144.98142 * 3 2 1 7 7 C 1.38810 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00408 * 198.64457 * 7 2 1 9 9 N 1.36940 * 120.00106 * 18.64565 * 7 2 1 10 10 C 1.46499 * 119.99736 * 10.59172 * 9 7 2 11 11 C 1.50704 * 109.47423 * 267.62468 * 10 9 7 12 12 O 1.20817 * 119.99389 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99854 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00134 * 190.59189 * 9 7 2 15 15 C 1.50698 * 109.46799 * 90.00151 * 14 9 7 16 16 N 1.30049 * 126.18582 * 90.02733 * 15 14 9 17 17 O 1.21279 * 110.50655 * 179.97438 * 16 15 14 18 18 C 1.34232 * 109.69220 * 359.97438 * 17 16 15 19 19 C 1.47639 * 126.68405 * 179.97438 * 18 17 16 20 20 C 1.39664 * 120.13805 * 179.75023 * 19 18 17 21 21 C 1.37806 * 119.90446 * 179.72569 * 20 19 18 22 22 C 1.38705 * 120.18243 * 0.57806 * 21 20 19 23 23 F 1.35097 * 119.86171 * 179.72049 * 22 21 20 24 24 C 1.38505 * 120.27832 * 359.69560 * 22 21 20 25 25 C 1.38183 * 120.09158 * 0.02562 * 24 22 21 26 26 F 1.35102 * 120.08917 * 180.02562 * 25 24 22 27 27 N 1.32205 * 106.62793 * 359.75985 * 18 17 16 28 28 H 0.96995 * 120.00314 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47245 * 27.62609 * 10 9 7 30 30 H 1.09010 * 109.47042 * 147.62429 * 10 9 7 31 31 H 0.96700 * 116.99248 * 179.97438 * 13 11 10 32 32 H 1.08994 * 109.47137 * 209.99768 * 14 9 7 33 33 H 1.08996 * 109.47144 * 330.00212 * 14 9 7 34 34 H 1.08006 * 120.04669 * 0.02562 * 20 19 18 35 35 H 1.08005 * 119.91166 * 180.27553 * 21 20 19 36 36 H 1.07994 * 119.94860 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9851 -1.3947 5 1 1.3986 2.6810 0.5912 6 1 3.4907 1.4732 0.8034 7 6 2.0103 -1.2021 0.0005 8 1 3.0478 -1.2266 0.2996 9 7 1.3795 -2.3571 -0.3781 10 6 0.0550 -2.2979 -1.0013 11 6 -1.0062 -2.4249 0.0612 12 8 -0.6886 -2.5514 1.2200 13 8 -2.3042 -2.3975 -0.2800 14 6 2.0293 -3.6519 -0.1600 15 6 1.6450 -4.1845 1.1963 16 7 0.6225 -4.9429 1.4619 17 8 0.5833 -5.2039 2.6457 18 6 1.6145 -4.6166 3.2728 19 6 1.9256 -4.6863 4.7144 20 6 3.0438 -4.0221 5.2234 21 6 3.3265 -4.0858 6.5706 22 6 2.5103 -4.8174 7.4206 23 9 2.7966 -4.8800 8.7394 24 6 1.4026 -5.4836 6.9231 25 6 1.1052 -5.4228 5.5750 26 9 0.0244 -6.0723 5.0898 27 7 2.3000 -3.9674 2.3473 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0609 -1.3455 -1.5186 30 1 -0.0470 -3.1145 -1.7162 31 1 -2.9482 -2.4830 0.4362 32 1 1.7086 -4.3536 -0.9300 33 1 3.1111 -3.5283 -0.2087 34 1 3.6834 -3.4555 4.5628 35 1 4.1887 -3.5686 6.9650 36 1 0.7705 -6.0513 7.5897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:49 Heat of formation + Delta-G solvation = -68.756045 kcal Electronic energy + Delta-G solvation = -29471.181474 eV Core-core repulsion = 24788.536498 eV Total energy + Delta-G solvation = -4682.644976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.24625 -50.13981 -46.31809 -40.59002 -39.98839 -38.02404 -36.57937 -36.19163 -34.43149 -33.17845 -32.12440 -31.01628 -29.77828 -28.33399 -25.67092 -25.10734 -24.23497 -23.64050 -22.34966 -21.85313 -19.49078 -19.11548 -18.91545 -18.80306 -18.43557 -18.20820 -17.38886 -17.22643 -17.12443 -17.01263 -16.73158 -16.45936 -15.98772 -15.63781 -15.38914 -15.31040 -15.22799 -14.97235 -14.40330 -13.65072 -13.55461 -13.53761 -13.38355 -13.31451 -13.06213 -12.77752 -12.58149 -12.51753 -12.38349 -12.12406 -12.02773 -11.96464 -11.90004 -11.30498 -11.17882 -10.61811 -10.25333 -9.69502 -9.26889 -8.00849 -5.37575 -0.84010 -0.15843 0.57415 1.38994 1.49318 1.52007 1.58461 1.73195 2.02351 2.23114 2.45113 2.53731 2.67723 2.75156 3.08718 3.16377 3.33843 3.46201 3.53745 3.73970 3.94829 3.96586 4.42938 4.52671 4.54271 4.56711 4.74022 4.76583 4.82316 4.93866 4.98290 5.08944 5.15310 5.19388 5.50697 5.58507 6.09961 6.10168 6.92247 7.28831 7.52730 7.69436 8.00050 9.06506 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.003802 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.731033 B = 7362.083350 C = 8406.265088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.252 4.252 8 H 0.088 0.912 9 N -0.562 5.562 10 C 0.182 3.818 11 C 0.482 3.518 12 O -0.554 6.554 13 O -0.536 6.536 14 C 0.218 3.782 15 C 0.172 3.828 16 N -0.396 5.396 17 O 0.070 5.930 18 C 0.196 3.804 19 C -0.083 4.083 20 C -0.009 4.009 21 C -0.146 4.146 22 C 0.159 3.841 23 F -0.120 7.120 24 C -0.181 4.181 25 C 0.153 3.847 26 F -0.127 7.127 27 N -0.471 5.471 28 H 0.251 0.749 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.396 0.604 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.186 0.814 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -10.451 10.660 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.232 1.232 6 H -0.198 1.198 7 C -0.381 4.381 8 H 0.106 0.894 9 N -0.281 5.281 10 C 0.053 3.947 11 C 0.324 3.676 12 O -0.443 6.443 13 O -0.347 6.347 14 C 0.089 3.911 15 C -0.104 4.104 16 N -0.106 5.106 17 O 0.014 5.986 18 C -0.022 4.022 19 C -0.087 4.087 20 C -0.029 4.029 21 C -0.165 4.165 22 C 0.139 3.861 23 F -0.098 7.098 24 C -0.201 4.201 25 C 0.131 3.869 26 F -0.105 7.105 27 N -0.206 5.206 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.177 0.823 35 H 0.203 0.797 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.492 -10.341 9.826 15.285 hybrid contribution -1.052 0.901 1.066 1.747 sum 4.441 -9.440 10.891 15.082 Atomic orbital electron populations 1.69965 1.06467 1.25920 1.55873 1.25583 0.96102 1.01458 1.01144 0.85082 0.77440 0.78575 0.78059 1.20032 1.23212 1.19796 1.19685 0.94458 0.84525 1.39429 0.89419 1.44613 1.15120 1.01562 1.66811 1.20726 0.80145 1.03370 0.90463 1.25360 0.82069 0.68531 0.91690 1.90480 1.82639 1.47878 1.23275 1.84554 1.18701 1.86259 1.45164 1.19936 0.99451 0.86564 0.85119 1.27650 0.88782 0.93930 1.00074 1.74377 1.21428 1.20742 0.94062 1.85306 1.42418 1.55895 1.15017 1.26427 0.85632 0.93463 0.96664 1.17570 1.00733 1.06466 0.83913 1.21096 0.92612 0.93427 0.95752 1.21419 1.02391 1.01158 0.91496 1.17492 0.93950 0.96355 0.78306 1.91581 1.92758 1.94376 1.31134 1.21085 1.00408 1.05310 0.93261 1.17440 0.84309 0.93246 0.91876 1.91580 1.51928 1.78526 1.88493 1.71960 1.29279 1.20477 0.98852 0.93965 0.87011 0.89687 0.74631 0.88221 0.87858 0.82298 0.79696 0.80047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.50 8.90 21.65 0.19 -52.31 16 2 C -0.05 -2.59 5.04 84.86 0.43 -2.16 16 3 Si 0.98 43.62 29.59 68.60 2.03 45.65 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.25 -13.03 9.74 84.03 0.82 -12.21 16 8 H 0.09 4.43 7.88 -2.91 -0.02 4.41 16 9 N -0.56 -26.64 2.11 -710.68 -1.50 -28.13 16 10 C 0.18 8.41 5.56 85.63 0.48 8.89 16 11 C 0.48 23.87 6.50 71.24 0.46 24.34 16 12 O -0.55 -31.14 14.48 21.99 0.32 -30.82 16 13 O -0.54 -22.85 13.42 -51.43 -0.69 -23.54 16 14 C 0.22 8.76 6.33 85.63 0.54 9.30 16 15 C 0.17 7.54 6.44 138.52 0.89 8.43 16 16 N -0.40 -17.77 11.00 -58.50 -0.64 -18.41 16 17 O 0.07 2.99 10.16 69.36 0.70 3.70 16 18 C 0.20 7.57 7.98 87.24 0.70 8.27 16 19 C -0.08 -2.42 5.88 -20.06 -0.12 -2.54 16 20 C -0.01 -0.21 9.70 22.51 0.22 0.01 16 21 C -0.15 -2.28 10.01 22.28 0.22 -2.06 16 22 C 0.16 2.56 7.30 22.45 0.16 2.72 16 23 F -0.12 -1.84 17.26 44.97 0.78 -1.07 16 24 C -0.18 -3.21 9.99 22.32 0.22 -2.98 16 25 C 0.15 3.83 7.29 22.65 0.17 4.00 16 26 F -0.13 -3.67 15.93 44.97 0.72 -2.95 16 27 N -0.47 -20.00 11.26 -302.65 -3.41 -23.41 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.11 5.61 6.06 -2.38 -0.01 5.60 16 30 H 0.09 3.30 7.93 -2.38 -0.02 3.28 16 31 H 0.40 13.95 9.10 -74.06 -0.67 13.28 16 32 H 0.10 3.40 7.91 -2.39 -0.02 3.38 16 33 H 0.10 3.76 8.03 -2.39 -0.02 3.74 16 34 H 0.16 3.62 7.88 -2.91 -0.02 3.60 16 35 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -72.50 332.40 4.20 -68.29 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.51 Total: 18.98 kcal Atomic # 6 Polarization: 38.82 SS G_CDS: 5.19 Total: 44.02 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.36 Total: -122.26 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: 0.33 Total: -50.66 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.49 Total: -4.02 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.50 4.20 -68.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.463 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds