Wall clock time and date at job start Tue Mar 31 2020 22:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34722 * 116.99858 * 2 1 4 4 O 1.21478 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.47681 * 120.00265 * 179.97438 * 3 2 1 6 6 C 1.39820 * 120.05762 * 0.02562 * 5 3 2 7 7 C 1.37934 * 120.16819 * 180.02562 * 6 5 3 8 8 C 1.38321 * 120.28246 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 119.93968 * 179.97438 * 8 7 6 10 10 C 1.39838 * 120.11688 * 0.25965 * 8 7 6 11 11 C 1.47794 * 120.07845 * 179.72135 * 10 8 7 12 12 O 1.21560 * 120.00261 * 24.63172 * 11 10 8 13 13 N 1.34779 * 119.99629 * 204.62810 * 11 10 8 14 14 C 1.47072 * 136.05973 * 4.85668 * 13 11 10 15 15 C 1.53752 * 87.88843 * 152.95800 * 14 13 11 16 16 O 1.42892 * 114.39853 * 272.67556 * 15 14 13 17 17 C 1.50696 * 114.26574 * 139.78970 * 15 14 13 18 18 H 1.08006 * 120.00155 * 266.47986 * 17 15 14 19 19 C 1.37879 * 120.00001 * 86.47375 * 17 15 14 20 20 N 1.31506 * 119.99825 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00040 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.46521 * 90.00765 * 21 19 17 23 23 H 1.48498 * 109.47215 * 209.99936 * 21 19 17 24 24 H 1.48488 * 109.47460 * 330.00676 * 21 19 17 25 25 C 1.47067 * 136.05691 * 185.22477 * 13 11 10 26 26 C 1.39311 * 119.83744 * 359.46958 * 10 8 7 27 27 H 1.08998 * 109.47436 * 60.00380 * 1 2 3 28 28 H 1.09006 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47482 * 299.99812 * 1 2 3 30 30 H 1.08001 * 119.92042 * 0.02562 * 6 5 3 31 31 H 1.07996 * 119.85999 * 179.97438 * 7 6 5 32 32 H 1.09001 * 113.46261 * 267.69525 * 14 13 11 33 33 H 1.08998 * 113.46565 * 38.12786 * 14 13 11 34 34 H 0.96704 * 114.00386 * 273.58619 * 16 15 14 35 35 H 0.97003 * 120.00394 * 179.97438 * 20 19 17 36 36 H 1.09004 * 113.46699 * 321.86599 * 25 13 11 37 37 H 1.08995 * 113.47223 * 92.24615 * 25 13 11 38 38 H 1.07997 * 120.14356 * 180.28278 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2192 0.0005 5 6 3.5384 1.2778 0.0006 6 6 4.3011 0.1060 0.0006 7 6 5.6787 0.1756 0.0016 8 6 6.3150 1.4038 0.0022 9 17 8.0493 1.4810 0.0042 10 6 5.5638 2.5832 0.0071 11 6 6.2446 3.8950 0.0139 12 8 7.3743 3.9958 -0.4234 13 7 5.6127 4.9795 0.5050 14 6 4.3321 5.2449 1.1777 15 6 4.9978 6.4619 1.8409 16 8 5.6751 6.1703 3.0649 17 6 4.1162 7.6813 1.9239 18 1 4.1555 8.4300 1.1465 19 6 3.2595 7.8411 2.9923 20 7 3.2120 6.9297 3.9391 21 14 2.1672 9.3530 3.0956 22 1 0.8741 9.0765 2.4196 23 1 1.9188 9.6878 4.5209 24 1 2.8400 10.4963 2.4285 25 6 5.8976 6.4194 0.5980 26 6 4.1722 2.5187 0.0003 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8105 -0.8562 -0.0003 31 1 6.2630 -0.7326 0.0021 32 1 3.5281 5.5103 0.4913 33 1 4.0439 4.4670 1.8848 34 1 5.1055 6.1979 3.8459 35 1 2.6095 7.0422 4.6910 36 1 6.9431 6.6421 0.8112 37 1 5.5071 6.9943 -0.2416 38 1 3.5872 3.4265 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647196351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:33 Heat of formation + Delta-G solvation = -94.827246 kcal Electronic energy + Delta-G solvation = -27003.450653 eV Core-core repulsion = 22839.179074 eV Total energy + Delta-G solvation = -4164.271579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82002 -39.94393 -38.74101 -37.20739 -36.63458 -36.34535 -34.06997 -32.20359 -31.82466 -31.45139 -28.61721 -27.93959 -25.60863 -25.24183 -24.11029 -23.59566 -21.33969 -20.28956 -19.08528 -17.83572 -17.38705 -17.19437 -16.61532 -16.53723 -16.26445 -15.74669 -15.31882 -14.99593 -14.60621 -14.26620 -14.13395 -13.91004 -13.76979 -13.35709 -13.05186 -12.81199 -12.63401 -12.40267 -12.27763 -12.00044 -11.75242 -11.55509 -11.51678 -11.07875 -11.07233 -11.00293 -10.92480 -10.74499 -10.49725 -10.28245 -9.63796 -9.32177 -9.22474 -9.00768 -8.79221 -8.41254 -7.88654 -6.40947 -4.51424 0.26727 0.79526 2.02433 2.17971 2.42306 3.08052 3.15149 3.22967 3.25659 3.37025 3.70714 4.17961 4.37846 4.52326 4.55430 4.80250 4.87385 4.91065 4.95706 4.99124 5.16611 5.29784 5.46589 5.59934 5.68211 5.77695 5.85454 5.96556 6.13769 6.13867 6.29260 6.37605 6.44252 6.58264 6.65198 7.07956 7.54139 7.62236 7.78579 8.37535 8.52117 8.62887 9.20081 9.47687 10.65903 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.004436 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.479584 B = 6310.772401 C = 8821.851258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.492 6.492 5 C -0.134 4.134 6 C -0.034 4.034 7 C -0.135 4.135 8 C 0.042 3.958 9 Cl -0.025 7.025 10 C -0.121 4.121 11 C 0.574 3.426 12 O -0.535 6.535 13 N -0.627 5.627 14 C 0.064 3.936 15 C 0.243 3.757 16 O -0.570 6.570 17 C -0.535 4.535 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.110 3.890 26 C -0.010 4.010 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -15.712 -6.505 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.353 3.647 4 O -0.379 6.379 5 C -0.135 4.135 6 C -0.053 4.053 7 C -0.154 4.154 8 C 0.014 3.986 9 Cl 0.004 6.996 10 C -0.125 4.125 11 C 0.362 3.638 12 O -0.414 6.414 13 N -0.359 5.359 14 C -0.059 4.059 15 C 0.201 3.799 16 O -0.383 6.383 17 C -0.573 4.573 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.012 4.012 26 C -0.028 4.028 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.251 0.749 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.975 -15.623 -7.016 17.240 hybrid contribution -1.367 0.672 0.481 1.597 sum -3.342 -14.952 -6.535 16.656 Atomic orbital electron populations 1.23308 0.75669 1.03752 1.02971 1.86507 1.23796 1.32470 1.84558 1.21008 0.88770 0.81684 0.73205 1.90908 1.66473 1.35816 1.44714 1.19038 0.89585 0.94556 1.10356 1.21523 0.92895 0.98313 0.92570 1.21015 0.94463 0.96455 1.03452 1.21359 0.86887 0.93605 0.96770 1.98428 1.06797 1.98656 1.95685 1.19853 0.92967 0.93862 1.05771 1.17330 0.85466 0.82385 0.78592 1.90794 1.17418 1.85025 1.48166 1.49625 1.22337 1.07475 1.56491 1.24441 0.86097 1.00467 0.94867 1.19549 0.87664 0.90376 0.82329 1.86049 1.41352 1.92917 1.17961 1.21419 1.21233 1.06213 1.08411 0.90826 1.25073 0.96307 0.96745 0.94828 1.69255 1.38738 1.34389 1.11367 0.86311 0.80329 0.82220 0.77572 1.20236 1.20877 1.19467 1.23369 1.01434 0.77957 0.98413 1.21706 0.92850 0.98103 0.90183 0.91696 0.87929 0.91534 0.83186 0.83410 0.89662 0.91520 0.74927 0.91533 0.91203 0.89361 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.88 9.81 -40.55 -0.40 -4.27 16 3 C 0.51 6.98 7.89 34.59 0.27 7.26 16 4 O -0.49 -8.22 16.13 -19.25 -0.31 -8.53 16 5 C -0.13 -1.80 5.87 -105.04 -0.62 -2.41 16 6 C -0.03 -0.36 9.61 -39.10 -0.38 -0.74 16 7 C -0.14 -1.48 9.80 -39.66 -0.39 -1.87 16 8 C 0.04 0.62 6.35 -38.95 -0.25 0.37 16 9 Cl -0.03 -0.39 26.32 -51.86 -1.36 -1.75 16 10 C -0.12 -2.07 5.83 -104.99 -0.61 -2.68 16 11 C 0.57 11.80 7.71 -12.35 -0.10 11.70 16 12 O -0.54 -11.98 15.29 5.31 0.08 -11.90 16 13 N -0.63 -13.26 3.64 -186.18 -0.68 -13.94 16 14 C 0.06 1.38 5.55 -8.37 -0.05 1.33 16 15 C 0.24 5.80 1.58 -91.12 -0.14 5.66 16 16 O -0.57 -14.74 13.55 -35.23 -0.48 -15.22 16 17 C -0.53 -13.29 8.70 -34.44 -0.30 -13.59 16 18 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 19 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 20 N -0.90 -22.77 11.01 55.43 0.61 -22.16 16 21 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 C 0.11 2.38 8.03 -8.50 -0.07 2.31 16 26 C -0.01 -0.15 8.38 -38.77 -0.33 -0.48 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.15 1.11 7.60 -52.49 -0.40 0.71 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.09 1.75 7.89 -51.93 -0.41 1.34 16 33 H 0.07 1.47 7.76 -51.93 -0.40 1.06 16 34 H 0.39 10.32 6.32 45.56 0.29 10.61 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 38 H 0.16 2.66 5.29 -52.49 -0.28 2.39 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -29.90 347.55 -7.57 -37.47 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.28 Total: 10.72 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.97 Total: 9.95 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.07 Total: -36.10 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.10 Total: -39.93 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.36 Total: -1.75 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.90 -7.57 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647196351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.354 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds