Wall clock time and date at job start Tue Mar 31 2020 22:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 124.17594 * 2 1 4 4 O 1.21236 * 127.15727 * 0.02562 * 3 2 1 5 5 C 1.51588 * 105.68494 * 179.97438 * 3 2 1 6 6 N 1.47311 * 103.59113 * 0.32217 * 5 3 2 7 7 N 1.40101 * 126.69017 * 179.77307 * 6 5 3 8 8 S 1.65601 * 119.99698 * 271.09793 * 7 6 5 9 9 O 1.42101 * 106.40447 * 169.31456 * 8 7 6 10 10 O 1.42102 * 106.40178 * 302.23866 * 8 7 6 11 11 C 1.76203 * 107.22004 * 55.77594 * 8 7 6 12 12 C 1.37641 * 120.12966 * 243.91290 * 11 8 7 13 13 C 1.38614 * 120.24710 * 179.97438 * 12 11 8 14 14 C 1.38655 * 120.50042 * 0.02562 * 13 12 11 15 15 C 1.37594 * 120.25168 * 0.02562 * 14 13 12 16 16 C 1.40705 * 120.12335 * 63.63473 * 11 8 7 17 17 C 1.41388 * 120.24726 * 359.97438 * 16 11 8 18 18 H 1.08006 * 119.99808 * 330.46740 * 17 16 11 19 19 C 1.39939 * 120.00178 * 150.46432 * 17 16 11 20 20 N 1.30830 * 119.99974 * 345.18285 * 19 17 16 21 21 Si 1.86804 * 120.00246 * 165.18267 * 19 17 16 22 22 H 1.48499 * 109.46950 * 65.00388 * 21 19 17 23 23 H 1.48496 * 109.47322 * 185.00528 * 21 19 17 24 24 H 1.48502 * 109.46967 * 305.00577 * 21 19 17 25 25 C 1.33790 * 124.18147 * 180.30341 * 2 1 3 26 26 O 1.21532 * 123.76822 * 359.96079 * 25 2 1 27 27 H 1.09006 * 109.46744 * 265.15199 * 1 2 3 28 28 H 1.08998 * 109.47607 * 145.15490 * 1 2 3 29 29 H 1.09001 * 109.47434 * 25.14850 * 1 2 3 30 30 H 1.09001 * 110.76298 * 241.71423 * 5 3 2 31 31 H 1.09001 * 110.42972 * 118.76711 * 5 3 2 32 32 H 0.96993 * 120.00199 * 91.09742 * 7 6 5 33 33 H 1.07995 * 119.87303 * 0.02562 * 12 11 8 34 34 H 1.07997 * 119.74897 * 180.02562 * 13 12 11 35 35 H 1.08009 * 119.87177 * 180.02562 * 14 13 12 36 36 H 1.08007 * 120.12663 * 179.97438 * 15 14 13 37 37 H 0.97002 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2636 0.0004 5 6 3.6596 0.6342 0.0007 6 7 3.5338 -0.8335 -0.0071 7 7 4.5817 -1.7634 -0.0140 8 16 5.2166 -2.2847 -1.4519 9 8 6.3985 -3.0053 -1.1310 10 8 4.1381 -2.8478 -2.1861 11 6 5.7322 -0.8549 -2.3433 12 6 5.1301 -0.5311 -3.5379 13 6 5.5335 0.5934 -4.2409 14 6 6.5463 1.4039 -3.7510 15 6 7.1630 1.0989 -2.5594 16 6 6.7570 -0.0365 -1.8336 17 6 7.3784 -0.3556 -0.6043 18 1 6.8245 -0.8795 0.1607 19 6 8.7110 0.0072 -0.3789 20 7 9.4679 0.3730 -1.3813 21 14 9.4091 -0.0306 1.3534 22 1 9.4283 -1.4304 1.8488 23 1 10.7924 0.5093 1.3415 24 1 8.5615 0.7991 2.2469 25 6 2.2166 -1.1068 -0.0059 26 8 1.7603 -2.2332 -0.0111 27 1 -0.3633 -0.0869 1.0241 28 1 -0.3634 -0.8434 -0.5871 29 1 -0.3634 0.9302 -0.4367 30 1 4.1789 0.9699 0.8983 31 1 4.1767 0.9795 -0.8946 32 1 4.9352 -2.1019 0.8234 33 1 4.3399 -1.1550 -3.9286 34 1 5.0552 0.8402 -5.1772 35 1 6.8522 2.2779 -4.3069 36 1 7.9520 1.7313 -2.1799 37 1 10.3917 0.6242 -1.2251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654923642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:21 Heat of formation + Delta-G solvation = -52.046825 kcal Electronic energy + Delta-G solvation = -28515.962485 eV Core-core repulsion = 24387.882461 eV Total energy + Delta-G solvation = -4128.080023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21668 -38.61598 -37.79288 -36.48931 -36.30858 -35.58278 -35.09590 -34.05791 -31.96266 -30.42975 -29.73759 -27.30838 -27.11632 -25.70141 -22.77594 -21.86221 -21.32426 -20.80151 -19.16729 -18.34811 -17.88211 -17.47907 -16.83752 -16.66056 -16.19077 -15.94163 -15.58629 -15.35280 -14.66249 -14.45695 -14.18301 -13.99071 -13.86092 -13.49231 -13.33441 -12.88137 -12.75389 -12.69755 -12.17444 -11.88727 -11.67448 -11.45011 -11.32070 -11.28067 -11.23763 -11.20584 -10.90498 -10.69335 -10.34809 -10.07333 -9.99805 -9.86102 -9.55777 -9.27911 -9.17189 -8.21437 -7.79129 -7.21080 -4.94689 0.82063 1.60930 1.84814 2.15322 2.59078 2.67443 2.87322 2.88692 2.99447 3.00465 3.64330 4.00266 4.05653 4.25930 4.46094 4.78640 5.10058 5.13155 5.20571 5.34410 5.38034 5.43334 5.51086 5.71086 5.92569 6.08758 6.21023 6.27072 6.59492 6.76516 6.88732 7.00151 7.10740 7.14519 7.32515 7.36571 7.45681 7.64725 7.70159 8.09201 8.20814 8.31024 8.45384 9.73096 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.005324 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.739329 B = 5257.630430 C = 5339.259354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.575 5.575 3 C 0.533 3.467 4 O -0.469 6.469 5 C 0.059 3.941 6 N -0.405 5.405 7 N -0.861 5.861 8 S 2.686 3.314 9 O -0.940 6.940 10 O -0.972 6.972 11 C -0.774 4.774 12 C -0.001 4.001 13 C -0.245 4.245 14 C -0.072 4.072 15 C -0.156 4.156 16 C 0.187 3.813 17 C -0.450 4.450 18 H 0.086 0.914 19 C 0.084 3.916 20 N -0.766 5.766 21 Si 0.912 3.088 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.258 1.258 25 C 0.703 3.297 26 O -0.521 6.521 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.418 0.582 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 3.617 4.902 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.323 5.323 3 C 0.320 3.680 4 O -0.338 6.338 5 C -0.067 4.067 6 N -0.237 5.237 7 N -0.708 5.708 8 S 2.784 3.216 9 O -0.928 6.928 10 O -0.962 6.962 11 C -0.871 4.871 12 C -0.021 4.021 13 C -0.266 4.266 14 C -0.091 4.091 15 C -0.176 4.176 16 C 0.182 3.818 17 C -0.478 4.478 18 H 0.104 0.896 19 C -0.139 4.139 20 N -0.388 5.388 21 Si 0.734 3.266 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.182 1.182 25 C 0.404 3.596 26 O -0.392 6.392 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.256 0.744 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.866 2.696 4.452 9.432 hybrid contribution 0.910 0.594 0.866 1.390 sum -6.956 3.290 5.319 9.354 Atomic orbital electron populations 1.21853 0.74799 1.04841 1.03687 1.46241 1.09459 1.07647 1.68949 1.20777 0.88392 0.84718 0.74112 1.90811 1.78747 1.17768 1.46511 1.22983 0.95778 0.79233 1.08683 1.45122 0.98938 1.01512 1.78142 1.55931 1.37794 1.50677 1.26373 1.02051 0.72722 0.74758 0.72089 1.93614 1.45812 1.70665 1.82757 1.93508 1.55819 1.76817 1.70025 1.29631 1.19937 1.25408 1.12105 1.20262 0.95100 0.94587 0.92108 1.20514 1.04238 0.99809 1.02034 1.20929 0.95016 0.97501 0.95649 1.21417 1.01633 0.98346 0.96214 1.16977 0.86288 0.87853 0.90715 1.19800 0.96695 1.31086 1.00215 0.89622 1.25925 0.96807 0.91661 0.99537 1.69770 1.08036 1.28256 1.32759 0.86262 0.78606 0.80540 0.81153 1.18074 1.19751 1.18158 1.15842 0.80970 0.84502 0.78312 1.90997 1.74495 1.20047 1.53648 0.90870 0.89212 0.89093 0.84937 0.84298 0.74446 0.87370 0.88510 0.88571 0.86013 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.72 59.84 0.64 1.51 16 2 N -0.57 -7.68 3.00 -128.17 -0.39 -8.06 16 3 C 0.53 7.14 8.31 -10.55 -0.09 7.05 16 4 O -0.47 -6.99 17.69 5.60 0.10 -6.89 16 5 C 0.06 0.80 7.88 -4.31 -0.03 0.76 16 6 N -0.41 -6.47 3.81 -65.73 -0.25 -6.72 16 7 N -0.86 -14.84 5.75 60.35 0.35 -14.49 16 8 S 2.69 56.84 5.15 -107.50 -0.55 56.28 16 9 O -0.94 -22.04 16.71 -57.17 -0.96 -23.00 16 10 O -0.97 -22.48 16.97 -57.17 -0.97 -23.45 16 11 C -0.77 -16.99 5.54 -38.87 -0.22 -17.21 16 12 C 0.00 -0.01 9.53 -39.66 -0.38 -0.39 16 13 C -0.25 -4.93 10.05 -39.29 -0.39 -5.33 16 14 C -0.07 -1.46 10.02 -39.66 -0.40 -1.86 16 15 C -0.16 -3.46 8.66 -38.87 -0.34 -3.80 16 16 C 0.19 4.24 5.52 -106.82 -0.59 3.65 16 17 C -0.45 -10.05 7.63 -37.75 -0.29 -10.34 16 18 H 0.09 1.75 5.92 -52.48 -0.31 1.44 16 19 C 0.08 1.83 5.17 -17.34 -0.09 1.74 16 20 N -0.77 -17.37 11.11 55.55 0.62 -16.76 16 21 Si 0.91 16.29 29.58 -169.99 -5.03 11.26 16 22 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 23 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 24 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 25 C 0.70 11.57 8.45 -88.02 -0.74 10.82 16 26 O -0.52 -10.16 17.50 5.34 0.09 -10.07 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.87 7.97 -51.93 -0.41 0.46 16 29 H 0.09 0.76 7.91 -51.93 -0.41 0.35 16 30 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.14 2.01 7.73 -51.93 -0.40 1.61 16 32 H 0.42 6.01 8.94 -176.25 -1.58 4.44 16 33 H 0.11 2.19 7.33 -52.49 -0.38 1.80 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 2.72 6.42 -52.48 -0.34 2.39 16 37 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -31.51 338.99 -9.45 -40.96 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.66 Total: 9.20 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.91 Total: -13.39 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.33 Total: -46.03 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -1.73 Total: -63.41 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Atomic # 16 Polarization: 56.84 SS G_CDS: -0.55 Total: 56.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.51 -9.45 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654923642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.082 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds