Wall clock time and date at job start Tue Mar 31 2020 22:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 124.17594 * 2 1 4 4 O 1.21236 * 127.15727 * 0.02562 * 3 2 1 5 5 C 1.51588 * 105.68494 * 179.97438 * 3 2 1 6 6 N 1.47311 * 103.59113 * 0.32217 * 5 3 2 7 7 N 1.40101 * 126.69017 * 179.77307 * 6 5 3 8 8 S 1.65601 * 119.99698 * 271.09793 * 7 6 5 9 9 O 1.42101 * 106.40447 * 169.31456 * 8 7 6 10 10 O 1.42102 * 106.40178 * 302.23866 * 8 7 6 11 11 C 1.76203 * 107.22004 * 55.77594 * 8 7 6 12 12 C 1.37641 * 120.12966 * 243.91290 * 11 8 7 13 13 C 1.38614 * 120.24710 * 179.97438 * 12 11 8 14 14 C 1.38655 * 120.50042 * 0.02562 * 13 12 11 15 15 C 1.37594 * 120.25168 * 0.02562 * 14 13 12 16 16 C 1.40705 * 120.12335 * 63.63473 * 11 8 7 17 17 C 1.41388 * 120.24726 * 359.97438 * 16 11 8 18 18 H 1.08006 * 119.99808 * 330.46740 * 17 16 11 19 19 C 1.39939 * 120.00178 * 150.46432 * 17 16 11 20 20 N 1.30830 * 119.99974 * 345.18285 * 19 17 16 21 21 Si 1.86804 * 120.00246 * 165.18267 * 19 17 16 22 22 H 1.48499 * 109.46950 * 65.00388 * 21 19 17 23 23 H 1.48496 * 109.47322 * 185.00528 * 21 19 17 24 24 H 1.48502 * 109.46967 * 305.00577 * 21 19 17 25 25 C 1.33790 * 124.18147 * 180.30341 * 2 1 3 26 26 O 1.21532 * 123.76822 * 359.96079 * 25 2 1 27 27 H 1.09006 * 109.46744 * 265.15199 * 1 2 3 28 28 H 1.08998 * 109.47607 * 145.15490 * 1 2 3 29 29 H 1.09001 * 109.47434 * 25.14850 * 1 2 3 30 30 H 1.09001 * 110.76298 * 241.71423 * 5 3 2 31 31 H 1.09001 * 110.42972 * 118.76711 * 5 3 2 32 32 H 0.96993 * 120.00199 * 91.09742 * 7 6 5 33 33 H 1.07995 * 119.87303 * 0.02562 * 12 11 8 34 34 H 1.07997 * 119.74897 * 180.02562 * 13 12 11 35 35 H 1.08009 * 119.87177 * 180.02562 * 14 13 12 36 36 H 1.08007 * 120.12663 * 179.97438 * 15 14 13 37 37 H 0.97002 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2636 0.0004 5 6 3.6596 0.6342 0.0007 6 7 3.5338 -0.8335 -0.0071 7 7 4.5817 -1.7634 -0.0140 8 16 5.2166 -2.2847 -1.4519 9 8 6.3985 -3.0053 -1.1310 10 8 4.1381 -2.8478 -2.1861 11 6 5.7322 -0.8549 -2.3433 12 6 5.1301 -0.5311 -3.5379 13 6 5.5335 0.5934 -4.2409 14 6 6.5463 1.4039 -3.7510 15 6 7.1630 1.0989 -2.5594 16 6 6.7570 -0.0365 -1.8336 17 6 7.3784 -0.3556 -0.6043 18 1 6.8245 -0.8795 0.1607 19 6 8.7110 0.0072 -0.3789 20 7 9.4679 0.3730 -1.3813 21 14 9.4091 -0.0306 1.3534 22 1 9.4283 -1.4304 1.8488 23 1 10.7924 0.5093 1.3415 24 1 8.5615 0.7991 2.2469 25 6 2.2166 -1.1068 -0.0059 26 8 1.7603 -2.2332 -0.0111 27 1 -0.3633 -0.0869 1.0241 28 1 -0.3634 -0.8434 -0.5871 29 1 -0.3634 0.9302 -0.4367 30 1 4.1789 0.9699 0.8983 31 1 4.1767 0.9795 -0.8946 32 1 4.9352 -2.1019 0.8234 33 1 4.3399 -1.1550 -3.9286 34 1 5.0552 0.8402 -5.1772 35 1 6.8522 2.2779 -4.3069 36 1 7.9520 1.7313 -2.1799 37 1 10.3917 0.6242 -1.2251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654923642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:20 Heat of formation + Delta-G solvation = -74.407594 kcal Electronic energy + Delta-G solvation = -28516.932120 eV Core-core repulsion = 24387.882461 eV Total energy + Delta-G solvation = -4129.049659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40185 -39.83797 -39.42929 -38.21969 -37.67893 -36.87424 -36.79167 -35.68281 -33.19546 -32.07407 -31.38689 -28.52215 -28.09351 -27.34832 -23.97715 -23.49670 -22.96587 -22.01486 -20.68888 -19.64827 -19.52102 -18.99818 -18.10234 -17.92780 -17.68468 -17.31634 -17.04734 -16.62878 -16.29508 -16.01614 -15.40238 -15.20222 -15.12809 -14.97478 -14.89004 -14.43765 -13.80992 -13.79010 -13.51351 -13.44723 -13.32033 -13.10985 -13.06420 -12.92303 -12.78837 -12.58924 -12.51142 -12.16639 -11.66372 -11.56846 -11.45678 -11.13520 -10.96808 -10.86670 -10.45441 -9.86098 -9.45925 -8.81855 -6.62848 -0.73289 0.44180 0.49069 0.52392 0.97778 1.42475 1.52382 1.53187 1.55815 1.77775 2.17766 2.48945 2.65770 2.77827 2.93609 3.44647 3.70659 3.81426 4.12130 4.32427 4.35018 4.45000 4.48328 4.50948 4.56975 4.71712 4.77370 4.93333 4.98409 5.12871 5.25782 5.48311 5.70126 5.77795 5.81656 5.88349 6.00873 6.05124 6.23434 6.45065 6.65597 6.80252 6.93043 8.15064 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.005324 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.739329 B = 5257.630430 C = 5339.259354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.568 5.568 3 C 0.546 3.454 4 O -0.479 6.479 5 C 0.058 3.942 6 N -0.407 5.407 7 N -0.857 5.857 8 S 2.704 3.296 9 O -0.969 6.969 10 O -0.997 6.997 11 C -0.784 4.784 12 C -0.015 4.015 13 C -0.244 4.244 14 C -0.070 4.070 15 C -0.176 4.176 16 C 0.171 3.829 17 C -0.472 4.472 18 H 0.097 0.903 19 C 0.046 3.954 20 N -0.798 5.798 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.240 1.240 25 C 0.701 3.299 26 O -0.556 6.556 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.164 0.836 31 H 0.131 0.869 32 H 0.432 0.568 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 4.880 5.759 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.316 5.316 3 C 0.333 3.667 4 O -0.350 6.350 5 C -0.068 4.068 6 N -0.238 5.238 7 N -0.707 5.707 8 S 2.802 3.198 9 O -0.958 6.958 10 O -0.986 6.986 11 C -0.881 4.881 12 C -0.035 4.035 13 C -0.264 4.264 14 C -0.089 4.089 15 C -0.195 4.195 16 C 0.167 3.833 17 C -0.500 4.500 18 H 0.115 0.885 19 C -0.174 4.174 20 N -0.422 5.422 21 Si 0.789 3.211 22 H -0.188 1.188 23 H -0.192 1.192 24 H -0.163 1.163 25 C 0.402 3.598 26 O -0.429 6.429 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.181 0.819 31 H 0.149 0.851 32 H 0.274 0.726 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.394 3.986 5.309 10.702 hybrid contribution 0.995 0.232 0.521 1.147 sum -7.399 4.218 5.830 10.321 Atomic orbital electron populations 1.22186 0.72667 1.05744 1.05340 1.46297 1.10614 1.06519 1.68127 1.20577 0.88146 0.84383 0.73589 1.90819 1.78837 1.18081 1.47222 1.23165 0.96287 0.77470 1.09832 1.45273 0.98528 1.02168 1.77879 1.55276 1.38108 1.51356 1.25938 1.01289 0.71907 0.74345 0.72254 1.93569 1.47101 1.71674 1.83413 1.93474 1.56409 1.77507 1.71233 1.29684 1.20284 1.25341 1.12764 1.20477 0.95483 0.95323 0.92186 1.20845 1.03811 0.99045 1.02727 1.21241 0.94371 0.98201 0.95068 1.21477 1.02195 0.98574 0.97302 1.17194 0.86654 0.88229 0.91260 1.20122 0.97390 1.31871 1.00626 0.88530 1.26726 0.96859 0.90924 1.02857 1.69811 1.08648 1.29166 1.34528 0.85406 0.78418 0.80253 0.77023 1.18791 1.19184 1.16262 1.16023 0.81161 0.84702 0.77893 1.90973 1.75125 1.21515 1.55319 0.88769 0.89272 0.87404 0.81878 0.85099 0.72640 0.86908 0.85787 0.85866 0.86771 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.72 127.77 1.37 2.78 16 2 N -0.57 -14.23 3.00 -796.65 -2.39 -16.62 16 3 C 0.55 13.55 8.31 87.94 0.73 14.28 16 4 O -0.48 -13.24 17.69 -2.89 -0.05 -13.30 16 5 C 0.06 1.45 7.88 85.76 0.68 2.13 16 6 N -0.41 -12.54 3.81 -480.31 -1.83 -14.37 16 7 N -0.86 -29.03 5.75 37.02 0.21 -28.82 16 8 S 2.70 114.81 5.15 -56.49 -0.29 114.52 16 9 O -0.97 -45.93 16.71 -128.00 -2.14 -48.07 16 10 O -1.00 -46.45 16.97 -128.00 -2.17 -48.62 16 11 C -0.78 -34.31 5.54 22.73 0.13 -34.19 16 12 C -0.01 -0.61 9.53 22.22 0.21 -0.40 16 13 C -0.24 -9.40 10.05 22.46 0.23 -9.17 16 14 C -0.07 -2.75 10.02 22.22 0.22 -2.52 16 15 C -0.18 -7.72 8.66 22.73 0.20 -7.52 16 16 C 0.17 7.77 5.52 -21.29 -0.12 7.65 16 17 C -0.47 -20.96 7.63 23.46 0.18 -20.78 16 18 H 0.10 3.89 5.92 -2.91 -0.02 3.87 16 19 C 0.05 2.00 5.17 85.25 0.44 2.44 16 20 N -0.80 -36.25 11.11 21.83 0.24 -36.01 16 21 Si 0.97 32.40 29.58 68.60 2.03 34.43 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 23 H -0.27 -8.61 7.11 99.48 0.71 -7.91 16 24 H -0.24 -7.25 7.11 99.48 0.71 -6.55 16 25 C 0.70 22.38 8.45 179.44 1.52 23.90 16 26 O -0.56 -21.46 17.50 -3.82 -0.07 -21.53 16 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.09 1.61 7.97 -2.39 -0.02 1.59 16 29 H 0.11 1.55 7.91 -2.39 -0.02 1.53 16 30 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.13 3.65 7.73 -2.39 -0.02 3.63 16 32 H 0.43 12.13 8.94 -217.37 -1.94 10.19 16 33 H 0.11 4.52 7.33 -2.91 -0.02 4.50 16 34 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.11 5.13 6.42 -2.91 -0.02 5.11 16 37 H 0.30 12.17 8.30 -92.71 -0.77 11.40 16 Total: -1.00 -66.89 338.99 -1.47 -68.36 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.79 Total: 31.43 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 5.78 Total: -21.41 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -3.77 Total: -95.82 kcal Atomic # 8 Polarization: -127.09 SS G_CDS: -4.43 Total: -131.52 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: 2.03 Total: 34.43 kcal Atomic # 16 Polarization: 114.81 SS G_CDS: -0.29 Total: 114.52 kcal Total: -66.89 -1.47 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654923642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.049 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds