Wall clock time and date at job start Tue Mar 31 2020 22:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34027 * 124.50003 * 2 1 4 4 C 1.37194 * 115.15055 * 179.97438 * 3 2 1 5 5 C 1.37185 * 113.24220 * 0.02562 * 4 3 2 6 6 C 1.41231 * 125.48165 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00238 * 359.97225 * 6 5 4 8 8 C 1.50702 * 119.99993 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47143 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47491 * 179.97438 * 9 8 6 11 11 O 1.20833 * 119.99741 * 0.02562 * 10 9 8 12 12 O 1.34227 * 120.00192 * 179.97438 * 10 9 8 13 13 C 1.45198 * 116.99837 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47180 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99814 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00334 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00493 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47473 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00138 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99793 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47610 * 59.99895 * 22 20 18 24 24 H 1.48505 * 109.47284 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47144 * 299.99535 * 22 20 18 26 26 S 1.70611 * 124.50266 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47001 * 300.02019 * 1 2 3 29 29 H 1.09001 * 109.47163 * 60.02718 * 1 2 3 30 30 H 1.07997 * 122.42175 * 0.02562 * 3 2 1 31 31 H 1.07999 * 123.38156 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47281 * 299.99725 * 8 6 5 33 33 H 1.09002 * 109.46990 * 60.00057 * 8 6 5 34 34 H 1.09006 * 109.47131 * 300.00360 * 9 8 6 35 35 H 1.09002 * 109.47110 * 60.00156 * 9 8 6 36 36 H 1.09003 * 109.47753 * 300.00465 * 13 12 10 37 37 H 1.09008 * 109.47113 * 60.00428 * 13 12 10 38 38 H 0.97008 * 120.00050 * 359.97438 * 16 14 13 39 39 H 1.09002 * 109.47096 * 299.99865 * 17 16 14 40 40 H 1.09008 * 109.47067 * 59.99478 * 17 16 14 41 41 H 0.96996 * 119.99652 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2662 1.1046 0.0000 4 6 3.6199 0.8817 0.0006 5 6 3.9493 -0.4500 0.0005 6 6 5.2625 -0.9697 0.0004 7 8 6.2142 -0.2152 0.0000 8 6 5.4829 -2.4605 0.0009 9 6 6.9845 -2.7540 0.0001 10 6 7.2051 -4.2448 0.0012 11 8 6.2583 -4.9955 0.0020 12 8 8.4532 -4.7386 0.0002 13 6 8.5901 -6.1842 0.0020 14 6 10.0519 -6.5503 0.0012 15 8 10.8953 -5.6787 -0.0002 16 7 10.4221 -7.8462 0.0020 17 6 11.8432 -8.2022 0.0018 18 6 11.9853 -9.7024 0.0035 19 1 11.1052 -10.3282 0.0042 20 6 13.2391 -10.2761 0.0031 21 7 14.3110 -9.5140 0.0008 22 14 13.4152 -12.1357 0.0045 23 1 12.7642 -12.6956 -1.2071 24 1 14.8558 -12.4966 0.0032 25 1 12.7659 -12.6936 1.2179 26 16 2.4734 -1.4060 -0.0006 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5141 0.8898 29 1 -0.3633 0.5134 -0.8902 30 1 1.8428 2.0981 0.0004 31 1 4.3527 1.6750 0.0002 32 1 5.0280 -2.8948 0.8911 33 1 5.0276 -2.8954 -0.8889 34 1 7.4392 -2.3197 -0.8903 35 1 7.4402 -2.3191 0.8897 36 1 8.1139 -6.5933 0.8931 37 1 8.1117 -6.5955 -0.8870 38 1 9.7475 -8.5433 0.0035 39 1 12.3202 -7.7927 -0.8886 40 1 12.3208 -7.7912 0.8914 41 1 15.1929 -9.9177 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008409145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:50 Heat of formation + Delta-G solvation = -139.044259 kcal Electronic energy + Delta-G solvation = -24628.979565 eV Core-core repulsion = 20600.667393 eV Total energy + Delta-G solvation = -4028.312172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77724 -40.06607 -38.73127 -38.12461 -36.47411 -34.24870 -33.49220 -32.67894 -32.40879 -29.55915 -28.69276 -26.86351 -25.72253 -23.97172 -22.65269 -21.71510 -20.47795 -19.93419 -19.34699 -18.25819 -17.47884 -17.28168 -16.99386 -16.52067 -16.05265 -15.90221 -15.52252 -15.09314 -14.83817 -14.76004 -14.59017 -14.46036 -14.11684 -13.70113 -13.63747 -13.05309 -12.84758 -12.82513 -12.64243 -12.48425 -12.29372 -12.23325 -11.98132 -11.77531 -11.62357 -11.38260 -11.03611 -10.90934 -10.71158 -10.66549 -10.34698 -10.29340 -9.45736 -9.18895 -9.17909 -9.12177 -8.77922 -7.98916 -6.19381 -4.27056 -0.22416 0.95853 1.35924 1.66069 2.07008 2.35879 2.47469 3.17741 3.24274 3.29195 3.30590 3.65633 4.03516 4.15288 4.24974 4.33736 4.56658 4.64417 4.76421 4.77604 4.88220 4.92415 5.02386 5.12463 5.16522 5.22277 5.22842 5.29773 5.34048 5.38661 5.46692 5.54349 5.67802 5.82420 6.31506 7.06877 7.22530 7.30529 7.45882 7.57165 7.64948 7.92068 8.49743 8.70963 8.96308 9.39310 10.90692 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.001459 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.461272 B =19187.536559 C =19868.643591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.188 4.188 3 C -0.168 4.168 4 C -0.036 4.036 5 C -0.314 4.314 6 C 0.426 3.574 7 O -0.448 6.448 8 C -0.160 4.160 9 C -0.103 4.103 10 C 0.463 3.537 11 O -0.515 6.515 12 O -0.327 6.327 13 C 0.048 3.952 14 C 0.499 3.501 15 O -0.533 6.533 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 S 0.234 5.766 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.393 0.607 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.407 19.209 0.002 35.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.308 4.308 3 C -0.198 4.198 4 C -0.069 4.069 5 C -0.431 4.431 6 C 0.305 3.695 7 O -0.325 6.325 8 C -0.197 4.197 9 C -0.140 4.140 10 C 0.306 3.694 11 O -0.404 6.404 12 O -0.241 6.241 13 C -0.029 4.029 14 C 0.281 3.719 15 O -0.411 6.411 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.585 4.585 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 S 0.503 5.497 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.226 0.774 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.624 18.388 -0.002 34.867 hybrid contribution -0.054 0.050 0.003 0.073 sum -29.678 18.437 0.001 34.939 Atomic orbital electron populations 1.20450 0.87222 1.03471 1.03620 1.24552 1.01919 0.98399 1.05945 1.19976 0.92779 0.99800 1.07238 1.20997 0.96326 0.95396 0.94190 1.24048 0.99319 0.98287 1.21496 1.19927 0.86477 0.90960 0.72176 1.90637 1.43352 1.61605 1.36935 1.21908 0.96846 0.94474 1.06506 1.21093 0.96790 0.88423 1.07710 1.23688 0.80982 0.92466 0.72228 1.90664 1.42829 1.60823 1.46059 1.86575 1.30071 1.24341 1.83137 1.22878 0.97174 0.78276 1.04578 1.19898 0.88923 0.84224 0.78813 1.90716 1.52550 1.48313 1.49477 1.46364 1.11861 1.04989 1.72468 1.19175 0.74188 0.95498 0.98047 1.21170 0.92932 0.90684 1.53700 0.91817 1.24949 0.95471 0.98927 0.94586 1.69963 0.98128 1.35525 1.48542 0.86446 0.77224 0.84359 0.78707 1.20046 1.21034 1.20039 1.83240 0.93634 1.06460 1.66367 0.91014 0.89973 0.89973 0.83785 0.82907 0.87230 0.87237 0.86603 0.86612 0.88482 0.88476 0.77445 0.95239 0.95249 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.25 10.33 36.01 0.37 0.12 16 2 C -0.19 -1.00 6.28 -35.79 -0.22 -1.23 16 3 C -0.17 -0.97 9.99 -41.44 -0.41 -1.38 16 4 C -0.04 -0.26 9.95 -40.34 -0.40 -0.66 16 5 C -0.31 -2.50 6.23 -38.83 -0.24 -2.74 16 6 C 0.43 3.92 6.93 -33.17 -0.23 3.69 16 7 O -0.45 -5.34 16.36 5.41 0.09 -5.25 16 8 C -0.16 -1.31 4.28 -27.88 -0.12 -1.43 16 9 C -0.10 -1.01 5.10 -27.88 -0.14 -1.15 16 10 C 0.46 5.94 7.96 36.00 0.29 6.23 16 11 O -0.51 -7.17 15.73 -18.76 -0.30 -7.46 16 12 O -0.33 -5.12 9.75 -45.90 -0.45 -5.56 16 13 C 0.05 0.73 5.94 36.00 0.21 0.95 16 14 C 0.50 10.03 7.91 -10.99 -0.09 9.94 16 15 O -0.53 -13.16 16.50 -14.10 -0.23 -13.39 16 16 N -0.71 -14.61 5.55 -61.48 -0.34 -14.95 16 17 C 0.25 6.58 5.43 -5.20 -0.03 6.55 16 18 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -25.86 13.29 55.43 0.74 -25.13 16 22 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 S 0.23 1.39 22.35 -107.50 -2.40 -1.02 16 27 H 0.07 0.16 8.11 -51.93 -0.42 -0.26 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.15 1.04 8.02 -52.49 -0.42 0.62 16 32 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.10 1.26 8.13 -51.92 -0.42 0.84 16 38 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -35.13 381.11 -8.96 -44.09 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.36 Total: 1.70 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.43 Total: 5.60 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.40 Total: -40.07 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.89 Total: -31.67 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.13 -8.96 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008409145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.954 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds