Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86798 * 119.99556 * 2 1 4 4 H 1.48505 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46919 * 299.99456 * 3 2 1 6 6 H 1.48491 * 109.47390 * 59.99760 * 3 2 1 7 7 C 1.38749 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00020 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99659 * 0.28224 * 7 2 1 10 10 C 1.34324 * 116.99540 * 179.71803 * 9 7 2 11 11 O 1.21210 * 120.00190 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99533 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.58797 * 348.89859 * 12 10 9 14 14 C 1.53198 * 109.58483 * 228.61500 * 12 10 9 15 15 C 1.53033 * 109.31474 * 185.57970 * 14 12 10 16 16 C 1.53041 * 109.53861 * 61.36279 * 15 14 12 17 17 C 1.53194 * 109.31438 * 298.63722 * 16 15 14 18 18 N 1.46924 * 109.58686 * 109.18681 * 12 10 9 19 19 S 1.65600 * 120.62899 * 353.39151 * 18 12 10 20 20 O 1.42102 * 106.40209 * 209.01316 * 19 18 12 21 21 O 1.42096 * 106.40171 * 341.93392 * 19 18 12 22 22 C 1.76195 * 107.21943 * 95.47426 * 19 18 12 23 23 C 1.38236 * 119.99905 * 260.63234 * 22 19 18 24 24 C 1.38237 * 119.99406 * 179.78699 * 23 22 19 25 25 C 1.38225 * 120.00450 * 0.43898 * 24 23 22 26 26 C 1.38231 * 120.00257 * 359.81616 * 25 24 23 27 27 C 1.38237 * 119.99811 * 359.97438 * 26 25 24 28 28 H 0.96997 * 120.00337 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.49815 * 305.53405 * 14 12 10 30 30 H 1.09005 * 109.49664 * 65.59729 * 14 12 10 31 31 H 1.08999 * 109.46347 * 181.38885 * 15 14 12 32 32 H 1.09004 * 109.45918 * 301.35950 * 15 14 12 33 33 H 1.09002 * 109.49813 * 58.58963 * 16 15 14 34 34 H 1.09001 * 109.49722 * 178.65099 * 16 15 14 35 35 H 1.08998 * 109.58229 * 174.42053 * 17 16 15 36 36 H 1.08995 * 109.58422 * 294.70294 * 17 16 15 37 37 H 1.07994 * 120.00247 * 359.97438 * 23 22 19 38 38 H 1.08007 * 119.99317 * 180.27709 * 24 23 22 39 39 H 1.08006 * 120.00549 * 179.83194 * 25 24 23 40 40 H 1.08001 * 120.00478 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.00018 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3336 -2.3700 -0.0047 10 6 2.0652 -3.4965 -0.0097 11 8 3.2756 -3.4330 -0.0090 12 6 1.3810 -4.8392 -0.0152 13 1 0.3173 -4.7081 0.1835 14 6 1.9985 -5.7345 1.0637 15 6 1.3976 -7.1382 0.9615 16 6 1.7251 -7.7367 -0.4084 17 6 1.1045 -6.8641 -1.5040 18 7 1.5622 -5.4790 -1.3253 19 16 2.2725 -4.6566 -2.5749 20 8 1.7200 -5.1889 -3.7710 21 8 2.2090 -3.2782 -2.2355 22 6 3.9805 -5.0895 -2.5801 23 6 4.9105 -4.2402 -2.0103 24 6 6.2500 -4.5820 -2.0106 25 6 6.6604 -5.7686 -2.5887 26 6 5.7311 -6.6154 -3.1631 27 6 4.3911 -6.2757 -3.1591 28 1 -0.4850 0.8400 -0.0004 29 1 3.0773 -5.7891 0.9177 30 1 1.7852 -5.3178 2.0482 31 1 1.8170 -7.7708 1.7438 32 1 0.3159 -7.0799 1.0828 33 1 2.8065 -7.7724 -0.5407 34 1 1.3173 -8.7456 -0.4716 35 1 1.4170 -7.2290 -2.4824 36 1 0.0178 -6.9022 -1.4297 37 1 4.5903 -3.3112 -1.5623 38 1 6.9761 -3.9205 -1.5614 39 1 7.7073 -6.0343 -2.5913 40 1 6.0517 -7.5427 -3.6144 41 1 3.6649 -6.9376 -3.6076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020990256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -108.194817 kcal Electronic energy + Delta-G solvation = -29402.930630 eV Core-core repulsion = 25375.956190 eV Total energy + Delta-G solvation = -4026.974440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.55922 -38.87185 -37.84520 -36.74850 -35.41170 -34.87472 -32.43991 -31.98116 -31.25712 -31.03119 -30.83050 -25.85551 -24.48516 -23.60850 -23.01309 -22.56040 -20.56669 -20.36986 -18.60619 -17.85210 -17.64851 -17.19433 -16.33504 -15.94332 -15.64148 -15.00941 -14.68744 -14.61525 -14.38506 -14.26226 -14.17848 -13.99841 -13.74384 -13.48768 -13.27401 -12.83350 -12.63173 -12.34232 -12.08628 -11.79963 -11.57239 -11.52697 -11.42872 -11.25536 -11.13424 -11.01680 -10.90378 -10.79953 -10.57295 -10.34861 -10.30449 -10.05896 -9.64191 -9.28797 -8.97429 -8.85793 -8.76722 -8.40488 -6.25468 -3.85738 0.64536 1.05513 1.48156 2.94008 3.21445 3.28398 3.34997 3.59022 3.75583 3.93956 4.16231 4.45747 4.55316 4.77416 4.87228 4.88272 4.97171 5.04254 5.14331 5.19158 5.32301 5.36511 5.44544 5.54790 5.56973 5.66513 5.76494 5.82322 5.83876 5.97377 6.01289 6.10161 6.11324 6.24206 6.32365 6.40093 6.45603 6.54327 6.69773 6.86114 7.03467 7.57019 8.13860 8.86191 9.24326 10.00008 10.93430 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005500 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.301835 B = 5090.114430 C = 6108.704634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.036 3.964 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.345 4.345 8 H 0.095 0.905 9 O -0.191 6.191 10 C 0.395 3.605 11 O -0.559 6.559 12 C 0.172 3.828 13 H 0.099 0.901 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.136 4.136 17 C 0.123 3.877 18 N -0.984 5.984 19 S 2.674 3.326 20 O -0.966 6.966 21 O -0.900 6.900 22 C -0.670 4.670 23 C 0.014 3.986 24 C -0.148 4.148 25 C -0.070 4.070 26 C -0.155 4.155 27 C -0.028 4.028 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.166 0.834 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 -16.488 -1.674 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.422 4.422 8 H 0.113 0.887 9 O -0.095 6.095 10 C 0.242 3.758 11 O -0.459 6.459 12 C 0.065 3.935 13 H 0.117 0.883 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.175 4.175 17 C -0.002 4.002 18 N -0.823 5.823 19 S 2.766 3.234 20 O -0.957 6.957 21 O -0.890 6.890 22 C -0.757 4.757 23 C -0.005 4.005 24 C -0.167 4.167 25 C -0.089 4.089 26 C -0.174 4.174 27 C -0.047 4.047 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.183 0.817 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.188 -15.709 -2.259 17.034 hybrid contribution 1.102 0.340 0.170 1.166 sum 7.290 -15.369 -2.089 17.139 Atomic orbital electron populations 1.70000 1.05919 1.27193 1.47513 1.25292 0.95785 0.98714 0.96920 0.85670 0.79433 0.80556 0.77871 1.19079 1.20364 1.20479 1.21135 0.92179 0.79442 1.49401 0.88741 1.83777 1.39014 1.13122 1.73610 1.22362 0.86748 0.86814 0.79914 1.90430 1.15128 1.87725 1.52617 1.20397 1.01450 0.88814 0.82872 0.88322 1.21800 1.01679 0.94447 0.97936 1.21467 1.01186 0.95835 0.96713 1.21943 1.01583 0.98620 0.95347 1.21444 1.00026 0.79605 0.99156 1.57756 1.74773 1.24400 1.25406 1.02711 0.73872 0.74183 0.72671 1.93539 1.77304 1.80887 1.43924 1.93749 1.85731 1.28449 1.81076 1.31013 1.26035 1.05130 1.13516 1.21560 0.92050 0.98587 0.88255 1.21352 0.96459 0.97537 1.01337 1.21412 0.99382 0.93723 0.94345 1.21124 0.93265 1.00456 1.02569 1.20819 0.96748 0.93683 0.93456 0.92422 0.90229 0.90308 0.91535 0.91470 0.91393 0.90744 0.89573 0.90458 0.81710 0.85383 0.85869 0.85707 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.67 55.48 0.76 -25.38 16 2 C 0.04 1.03 5.49 -17.53 -0.10 0.93 16 3 Si 0.94 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.34 -10.27 9.35 30.92 0.29 -9.98 16 8 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.19 -5.47 9.15 -27.74 -0.25 -5.73 16 10 C 0.39 9.39 3.85 36.00 0.14 9.53 16 11 O -0.56 -13.50 11.09 -26.48 -0.29 -13.79 16 12 C 0.17 3.09 3.37 -68.75 -0.23 2.85 16 13 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 14 C -0.12 -1.72 5.26 -26.61 -0.14 -1.86 16 15 C -0.11 -1.21 5.88 -26.69 -0.16 -1.37 16 16 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 17 C 0.12 1.48 6.35 -3.69 -0.02 1.45 16 18 N -0.98 -16.20 3.30 -107.67 -0.36 -16.55 16 19 S 2.67 51.71 5.14 -107.50 -0.55 51.16 16 20 O -0.97 -19.08 16.46 -57.17 -0.94 -20.03 16 21 O -0.90 -21.94 12.01 -69.87 -0.84 -22.78 16 22 C -0.67 -11.52 5.93 -39.58 -0.23 -11.75 16 23 C 0.01 0.26 8.31 -39.58 -0.33 -0.07 16 24 C -0.15 -2.16 10.05 -39.59 -0.40 -2.56 16 25 C -0.07 -0.85 10.05 -39.59 -0.40 -1.25 16 26 C -0.16 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.03 -0.39 9.53 -39.58 -0.38 -0.77 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.23 7.79 -51.93 -0.40 0.82 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.94 7.29 -51.93 -0.38 0.56 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.17 3.45 5.32 -52.49 -0.28 3.17 16 38 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.54 7.84 -52.48 -0.41 1.12 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -36.20 345.82 -10.00 -46.20 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.20 Total: 3.30 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.52 Total: -18.61 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.40 Total: -41.93 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -2.33 Total: -62.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.55 Total: 51.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.20 -10.00 -46.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020990256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.991 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds