Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86798 * 119.99556 * 2 1 4 4 H 1.48505 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46919 * 299.99456 * 3 2 1 6 6 H 1.48491 * 109.47390 * 59.99760 * 3 2 1 7 7 C 1.38749 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00020 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99659 * 0.28224 * 7 2 1 10 10 C 1.34324 * 116.99540 * 179.71803 * 9 7 2 11 11 O 1.21210 * 120.00190 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99533 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.58797 * 348.89859 * 12 10 9 14 14 C 1.53198 * 109.58483 * 228.61500 * 12 10 9 15 15 C 1.53033 * 109.31474 * 185.57970 * 14 12 10 16 16 C 1.53041 * 109.53861 * 61.36279 * 15 14 12 17 17 C 1.53194 * 109.31438 * 298.63722 * 16 15 14 18 18 N 1.46924 * 109.58686 * 109.18681 * 12 10 9 19 19 S 1.65600 * 120.62899 * 353.39151 * 18 12 10 20 20 O 1.42102 * 106.40209 * 209.01316 * 19 18 12 21 21 O 1.42096 * 106.40171 * 341.93392 * 19 18 12 22 22 C 1.76195 * 107.21943 * 95.47426 * 19 18 12 23 23 C 1.38236 * 119.99905 * 260.63234 * 22 19 18 24 24 C 1.38237 * 119.99406 * 179.78699 * 23 22 19 25 25 C 1.38225 * 120.00450 * 0.43898 * 24 23 22 26 26 C 1.38231 * 120.00257 * 359.81616 * 25 24 23 27 27 C 1.38237 * 119.99811 * 359.97438 * 26 25 24 28 28 H 0.96997 * 120.00337 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.49815 * 305.53405 * 14 12 10 30 30 H 1.09005 * 109.49664 * 65.59729 * 14 12 10 31 31 H 1.08999 * 109.46347 * 181.38885 * 15 14 12 32 32 H 1.09004 * 109.45918 * 301.35950 * 15 14 12 33 33 H 1.09002 * 109.49813 * 58.58963 * 16 15 14 34 34 H 1.09001 * 109.49722 * 178.65099 * 16 15 14 35 35 H 1.08998 * 109.58229 * 174.42053 * 17 16 15 36 36 H 1.08995 * 109.58422 * 294.70294 * 17 16 15 37 37 H 1.07994 * 120.00247 * 359.97438 * 23 22 19 38 38 H 1.08007 * 119.99317 * 180.27709 * 24 23 22 39 39 H 1.08006 * 120.00549 * 179.83194 * 25 24 23 40 40 H 1.08001 * 120.00478 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.00018 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3336 -2.3700 -0.0047 10 6 2.0652 -3.4965 -0.0097 11 8 3.2756 -3.4330 -0.0090 12 6 1.3810 -4.8392 -0.0152 13 1 0.3173 -4.7081 0.1835 14 6 1.9985 -5.7345 1.0637 15 6 1.3976 -7.1382 0.9615 16 6 1.7251 -7.7367 -0.4084 17 6 1.1045 -6.8641 -1.5040 18 7 1.5622 -5.4790 -1.3253 19 16 2.2725 -4.6566 -2.5749 20 8 1.7200 -5.1889 -3.7710 21 8 2.2090 -3.2782 -2.2355 22 6 3.9805 -5.0895 -2.5801 23 6 4.9105 -4.2402 -2.0103 24 6 6.2500 -4.5820 -2.0106 25 6 6.6604 -5.7686 -2.5887 26 6 5.7311 -6.6154 -3.1631 27 6 4.3911 -6.2757 -3.1591 28 1 -0.4850 0.8400 -0.0004 29 1 3.0773 -5.7891 0.9177 30 1 1.7852 -5.3178 2.0482 31 1 1.8170 -7.7708 1.7438 32 1 0.3159 -7.0799 1.0828 33 1 2.8065 -7.7724 -0.5407 34 1 1.3173 -8.7456 -0.4716 35 1 1.4170 -7.2290 -2.4824 36 1 0.0178 -6.9022 -1.4297 37 1 4.5903 -3.3112 -1.5623 38 1 6.9761 -3.9205 -1.5614 39 1 7.7073 -6.0343 -2.5913 40 1 6.0517 -7.5427 -3.6144 41 1 3.6649 -6.9376 -3.6076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020990256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -133.058832 kcal Electronic energy + Delta-G solvation = -29404.008814 eV Core-core repulsion = 25375.956190 eV Total energy + Delta-G solvation = -4028.052624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30114 -39.99916 -39.23886 -38.42483 -37.05624 -36.83214 -34.16271 -33.53832 -32.47981 -32.19221 -31.95436 -27.76093 -25.97326 -24.81313 -24.18719 -23.69286 -22.22456 -21.50000 -20.03576 -19.71150 -19.23237 -18.80518 -18.02943 -17.40023 -16.87685 -16.47669 -16.33909 -16.15639 -15.84226 -15.62519 -15.44057 -15.36511 -15.00375 -14.62213 -14.52181 -14.20229 -13.97729 -13.86195 -13.46279 -13.34699 -13.18129 -13.12852 -13.11624 -12.83087 -12.46526 -12.27306 -12.17723 -12.15636 -11.94581 -11.84027 -11.76038 -11.63614 -11.41286 -10.79996 -10.56997 -10.39407 -10.09111 -9.97975 -8.42425 -6.13040 -0.77616 -0.14820 0.35434 1.27387 1.32140 1.49557 1.55036 1.91465 2.14388 2.52930 2.61519 2.78661 3.10763 3.16048 3.70161 3.81402 3.87182 4.00191 4.07810 4.10202 4.13893 4.26903 4.31132 4.38884 4.49992 4.62450 4.66364 4.73568 4.79751 4.93621 4.99107 5.03327 5.13714 5.18702 5.20949 5.22719 5.29963 5.31052 5.41831 5.49011 5.52753 5.91662 5.99176 6.84923 7.04930 7.92228 8.80226 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005500 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.301835 B = 5090.114430 C = 6108.704634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.009 2.991 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.372 4.372 8 H 0.078 0.922 9 O -0.232 6.232 10 C 0.397 3.603 11 O -0.563 6.563 12 C 0.176 3.824 13 H 0.103 0.897 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.107 3.893 18 N -0.981 5.981 19 S 2.671 3.329 20 O -0.980 6.980 21 O -0.965 6.965 22 C -0.678 4.678 23 C -0.022 4.022 24 C -0.156 4.156 25 C -0.056 4.056 26 C -0.141 4.141 27 C -0.033 4.033 28 H 0.272 0.728 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -20.196 -1.911 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.216 4.216 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.449 4.449 8 H 0.096 0.904 9 O -0.139 6.139 10 C 0.244 3.756 11 O -0.461 6.461 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.168 4.168 17 C -0.016 4.016 18 N -0.823 5.823 19 S 2.767 3.233 20 O -0.970 6.970 21 O -0.955 6.955 22 C -0.769 4.769 23 C -0.041 4.041 24 C -0.175 4.175 25 C -0.074 4.074 26 C -0.159 4.159 27 C -0.052 4.052 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.038 -19.446 -2.497 21.190 hybrid contribution 0.667 1.237 0.175 1.416 sum 8.705 -18.209 -2.322 20.315 Atomic orbital electron populations 1.70098 1.07496 1.28537 1.49185 1.26440 0.96903 1.02217 0.96048 0.84681 0.77944 0.75551 0.78885 1.18787 1.19389 1.18193 1.21216 0.91714 0.80876 1.51071 0.90386 1.83791 1.40170 1.14098 1.75849 1.23589 0.87086 0.87853 0.77057 1.90431 1.15842 1.88237 1.51604 1.20496 1.01299 0.86317 0.85006 0.87893 1.21843 1.00855 0.96420 0.96218 1.21496 1.01818 0.93039 0.98212 1.21960 1.01543 0.99751 0.93526 1.21954 1.01344 0.77189 1.01076 1.57566 1.75045 1.26103 1.23572 1.02247 0.75011 0.73135 0.72868 1.93500 1.78237 1.80646 1.44606 1.93673 1.87087 1.32812 1.81956 1.30497 1.23594 1.06950 1.15825 1.21264 0.94226 0.97839 0.90813 1.21563 0.94970 0.99207 1.01763 1.21916 1.01743 0.91849 0.91861 1.21681 0.91885 1.01639 1.00735 1.21196 0.98746 0.92505 0.92785 0.91844 0.91535 0.90298 0.88957 0.90220 0.91568 0.86830 0.88228 0.88856 0.86261 0.84200 0.81415 0.81069 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.86 13.67 21.62 0.30 -57.56 16 2 C -0.02 -1.13 5.49 84.87 0.47 -0.66 16 3 Si 1.01 47.12 29.55 68.60 2.03 49.14 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.37 -23.83 9.35 67.94 0.64 -23.19 16 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 9 O -0.23 -14.40 9.15 21.43 0.20 -14.20 16 10 C 0.40 20.24 3.85 71.24 0.27 20.51 16 11 O -0.56 -29.37 11.09 27.88 0.31 -29.06 16 12 C 0.18 6.55 3.37 44.23 0.15 6.70 16 13 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 14 C -0.11 -3.22 5.26 30.67 0.16 -3.06 16 15 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 16 C -0.13 -2.04 6.08 30.67 0.19 -1.86 16 17 C 0.11 2.34 6.35 86.36 0.55 2.89 16 18 N -0.98 -32.61 3.30 -494.57 -1.63 -34.25 16 19 S 2.67 108.20 5.14 -56.49 -0.29 107.91 16 20 O -0.98 -39.55 16.46 -128.00 -2.11 -41.66 16 21 O -0.97 -51.32 12.01 -115.86 -1.39 -52.71 16 22 C -0.68 -23.60 5.93 22.27 0.13 -23.47 16 23 C -0.02 -0.82 8.31 22.27 0.19 -0.64 16 24 C -0.16 -4.42 10.05 22.27 0.22 -4.20 16 25 C -0.06 -1.13 10.05 22.26 0.22 -0.90 16 26 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 27 C -0.03 -0.85 9.53 22.27 0.21 -0.63 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.92 7.29 -2.39 -0.02 1.90 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 5.56 5.32 -2.91 -0.02 5.54 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.15 3.10 7.84 -2.91 -0.02 3.08 16 Total: -1.00 -88.52 345.82 2.26 -86.26 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.05 Total: 18.91 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.80 Total: -32.78 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -1.34 Total: -91.81 kcal Atomic # 8 Polarization: -134.64 SS G_CDS: -2.99 Total: -137.63 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 16 Polarization: 108.20 SS G_CDS: -0.29 Total: 107.91 kcal Total: -88.52 2.26 -86.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020990256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.803 kcal (2) G-P(sol) polarization free energy of solvation -88.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds