Wall clock time and date at job start Tue Mar 31 2020 23:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46620 * 2 1 4 4 N 1.46499 * 109.47511 * 119.99958 * 2 1 3 5 5 C 1.34776 * 119.99841 * 84.99719 * 4 2 1 6 6 S 1.71195 * 120.00249 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99757 * 179.97438 * 5 4 2 8 8 N 1.40096 * 120.00314 * 0.02562 * 7 5 4 9 9 C 1.34779 * 120.00359 * 180.27538 * 8 7 5 10 10 O 1.21612 * 119.99810 * 359.71967 * 9 8 7 11 11 C 1.47431 * 120.00262 * 179.72179 * 9 8 7 12 12 C 1.39672 * 120.21229 * 0.02562 * 11 9 8 13 13 C 1.37813 * 119.93668 * 179.97438 * 12 11 9 14 14 C 1.38653 * 120.37909 * 359.97438 * 13 12 11 15 15 C 1.37905 * 120.44175 * 359.97438 * 14 13 12 16 16 C 1.39118 * 120.04784 * 359.74792 * 15 14 13 17 17 S 1.76199 * 120.18848 * 180.27031 * 16 15 14 18 18 C 1.76197 * 100.00135 * 6.84044 * 17 16 15 19 19 H 1.08001 * 120.00043 * 5.65912 * 18 17 16 20 20 C 1.38805 * 120.00366 * 185.65121 * 18 17 16 21 21 N 1.31554 * 120.00538 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99627 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47363 * 89.99645 * 22 20 18 24 24 H 1.48500 * 109.46984 * 209.99869 * 22 20 18 25 25 H 1.48498 * 109.47006 * 329.99670 * 22 20 18 26 26 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47088 * 299.99416 * 1 2 3 28 28 H 1.09000 * 109.47074 * 59.99951 * 1 2 3 29 29 H 1.08996 * 109.47088 * 240.00584 * 2 1 3 30 30 H 1.09006 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47437 * 299.99826 * 3 2 1 32 32 H 1.09002 * 109.47318 * 60.00272 * 3 2 1 33 33 H 0.96997 * 120.00014 * 265.01014 * 4 2 1 34 34 H 0.97005 * 119.99920 * 180.02562 * 7 5 4 35 35 H 0.97005 * 119.99766 * 359.97438 * 8 7 5 36 36 H 1.08003 * 120.03366 * 359.94792 * 12 11 9 37 37 H 1.07997 * 119.80888 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.78026 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.97609 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 16 1.7405 -2.9293 -0.2059 7 7 2.5970 -2.6674 2.2946 8 7 2.9303 -1.9333 3.4403 9 6 3.3854 -2.5680 4.5387 10 8 3.5019 -3.7786 4.5370 11 6 3.7419 -1.7949 5.7424 12 6 3.6093 -0.4045 5.7494 13 6 3.9438 0.3125 6.8778 14 6 4.4117 -0.3384 8.0091 15 6 4.5477 -1.7106 8.0197 16 6 4.2099 -2.4528 6.8925 17 16 4.3755 -4.2070 6.9044 18 6 4.7887 -4.4639 8.5979 19 1 4.7755 -3.6340 9.2888 20 6 5.1310 -5.7329 9.0440 21 7 5.4391 -5.9249 10.3085 22 14 5.1544 -7.1683 7.8487 23 1 6.5054 -7.2871 7.2440 24 1 4.8247 -8.4216 8.5738 25 1 4.1515 -6.9374 6.7782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.2490 -0.1823 1.9894 34 1 2.6900 -3.6330 2.2932 35 1 2.8376 -0.9677 3.4416 36 1 3.2454 0.1083 4.8713 37 1 3.8408 1.3876 6.8808 38 1 4.6714 0.2332 8.8880 39 1 4.9125 -2.2099 8.9051 40 1 5.6787 -6.8117 10.6201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030059690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:27 Heat of formation + Delta-G solvation = 48.175015 kcal Electronic energy + Delta-G solvation = -23923.702550 eV Core-core repulsion = 20378.554437 eV Total energy + Delta-G solvation = -3545.148113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67294 -39.18470 -37.91914 -36.46013 -33.26186 -32.88720 -31.61535 -30.66775 -30.12616 -27.69621 -26.10389 -24.67448 -23.29471 -22.46330 -22.29344 -21.01658 -19.68779 -18.63838 -17.94513 -17.04832 -16.53321 -16.01451 -15.81348 -15.54590 -15.34825 -14.99528 -14.89191 -14.33523 -14.19977 -14.12313 -13.53544 -13.32351 -12.88684 -12.78633 -12.65378 -12.40486 -12.11742 -11.91634 -11.57777 -11.54346 -11.37993 -11.31864 -11.12459 -10.82897 -10.75060 -10.34019 -9.89778 -9.66016 -9.04946 -9.03594 -8.72967 -8.55799 -7.89721 -7.75231 -7.04816 -6.64611 -4.38581 0.94716 1.12643 1.19609 1.65211 1.98119 2.40780 2.66878 2.94183 3.09878 3.24358 3.30329 3.98065 4.03216 4.07475 4.34549 4.40891 4.56867 4.64745 4.78973 4.79427 4.88995 5.14250 5.19913 5.28317 5.35832 5.46399 5.50963 5.53452 5.76194 5.82897 5.95789 5.97522 6.04276 6.20489 6.36135 6.48920 6.70980 6.81998 6.94893 7.08128 7.18921 7.58259 8.07607 8.16832 8.78054 10.42032 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.003069 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.902276 B = 9121.855570 C =10819.158751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 C -0.164 4.164 4 N -0.684 5.684 5 C 0.566 3.434 6 S -0.616 6.616 7 N -0.460 5.460 8 N -0.556 5.556 9 C 0.561 3.439 10 O -0.495 6.495 11 C -0.173 4.173 12 C -0.064 4.064 13 C -0.174 4.174 14 C -0.070 4.070 15 C -0.140 4.140 16 C -0.028 4.028 17 S 0.101 5.899 18 C -0.582 4.582 19 H 0.109 0.891 20 C 0.105 3.895 21 N -0.855 5.855 22 Si 0.849 3.151 23 H -0.261 1.261 24 H -0.266 1.266 25 H -0.234 1.234 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.391 0.609 34 H 0.459 0.541 35 H 0.415 0.585 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 17.269 -13.672 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 C -0.222 4.222 4 N -0.317 5.317 5 C 0.203 3.797 6 S -0.492 6.492 7 N -0.188 5.188 8 N -0.310 5.310 9 C 0.351 3.649 10 O -0.369 6.369 11 C -0.190 4.190 12 C -0.085 4.085 13 C -0.197 4.197 14 C -0.092 4.092 15 C -0.164 4.164 16 C -0.148 4.148 17 S 0.364 5.636 18 C -0.728 4.728 19 H 0.126 0.874 20 C -0.107 4.107 21 N -0.488 5.488 22 Si 0.673 3.327 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.158 1.158 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.310 0.690 35 H 0.257 0.743 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.167 0.833 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.923 14.594 -15.119 21.832 hybrid contribution 0.572 1.164 2.013 2.394 sum -5.350 15.757 -13.106 21.183 Atomic orbital electron populations 1.22195 0.94029 1.04025 1.02148 1.21478 0.95239 0.92419 0.87584 1.22140 1.01988 0.94577 1.03471 1.45144 1.65121 1.03514 1.17936 1.22444 0.81887 0.86353 0.88989 1.93636 1.71491 1.65032 1.19035 1.44765 1.61783 1.09713 1.02501 1.45520 1.71069 1.08172 1.06196 1.18570 0.77028 0.87912 0.81344 1.90840 1.51938 1.13167 1.80941 1.18649 1.14332 0.92983 0.93021 1.20796 0.98056 0.91986 0.97618 1.20720 1.05880 0.99195 0.93948 1.21201 0.96128 0.94353 0.97547 1.21615 1.01966 0.93762 0.99062 1.22504 0.96781 1.01284 0.94253 1.84112 1.73394 0.94272 1.11788 1.23497 1.54376 1.00088 0.94861 0.87397 1.24822 0.92242 0.98400 0.95260 1.69892 1.40419 1.24088 1.14372 0.86884 0.81226 0.82365 0.82248 1.18551 1.19083 1.15804 0.90578 0.92801 0.90945 0.86470 0.91724 0.89973 0.92032 0.77206 0.69011 0.74279 0.87429 0.86416 0.86222 0.83265 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.43 37.16 0.35 -0.76 16 2 C 0.14 0.91 2.95 -67.93 -0.20 0.71 16 3 C -0.16 -0.66 9.38 37.16 0.35 -0.31 16 4 N -0.68 -5.18 5.04 -55.52 -0.28 -5.46 16 5 C 0.57 6.34 7.94 -86.92 -0.69 5.65 16 6 S -0.62 -9.14 28.14 -107.50 -3.02 -12.17 16 7 N -0.46 -5.47 6.26 29.96 0.19 -5.28 16 8 N -0.56 -6.25 6.21 30.44 0.19 -6.06 16 9 C 0.56 8.88 7.87 -12.52 -0.10 8.78 16 10 O -0.50 -9.71 13.61 5.27 0.07 -9.64 16 11 C -0.17 -2.80 5.89 -104.76 -0.62 -3.42 16 12 C -0.06 -0.78 9.53 -39.20 -0.37 -1.15 16 13 C -0.17 -2.11 10.02 -39.58 -0.40 -2.51 16 14 C -0.07 -1.01 10.02 -39.55 -0.40 -1.40 16 15 C -0.14 -2.59 9.22 -39.38 -0.36 -2.95 16 16 C -0.03 -0.56 6.14 -38.39 -0.24 -0.80 16 17 S 0.10 2.37 16.53 -107.50 -1.78 0.60 16 18 C -0.58 -15.36 9.54 30.94 0.30 -15.06 16 19 H 0.11 2.92 5.21 -52.49 -0.27 2.64 16 20 C 0.10 2.83 5.50 -17.46 -0.10 2.73 16 21 N -0.86 -23.84 13.96 55.49 0.77 -23.06 16 22 Si 0.85 19.97 27.74 -169.99 -4.71 15.26 16 23 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.23 -5.50 6.74 56.52 0.38 -5.12 16 26 H 0.08 0.71 7.49 -51.93 -0.39 0.33 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.12 1.02 6.82 -51.93 -0.35 0.66 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.39 2.05 6.52 -40.82 -0.27 1.79 16 34 H 0.46 6.16 7.98 -182.60 -1.46 4.70 16 35 H 0.41 3.17 4.73 -182.60 -0.86 2.30 16 36 H 0.11 0.81 6.40 -52.48 -0.34 0.47 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.15 3.06 5.03 -52.49 -0.26 2.80 16 40 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -31.92 357.20 -11.98 -43.90 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.32 Total: 7.04 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.47 Total: -10.50 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.87 Total: -39.87 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.71 Total: 15.26 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -4.80 Total: -11.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.92 -11.98 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030059690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.077 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds