Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46620 * 2 1 4 4 N 1.46499 * 109.47511 * 119.99958 * 2 1 3 5 5 C 1.34776 * 119.99841 * 84.99719 * 4 2 1 6 6 S 1.71195 * 120.00249 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99757 * 179.97438 * 5 4 2 8 8 N 1.40096 * 120.00314 * 0.02562 * 7 5 4 9 9 C 1.34779 * 120.00359 * 180.27538 * 8 7 5 10 10 O 1.21612 * 119.99810 * 359.71967 * 9 8 7 11 11 C 1.47431 * 120.00262 * 179.72179 * 9 8 7 12 12 C 1.39672 * 120.21229 * 0.02562 * 11 9 8 13 13 C 1.37813 * 119.93668 * 179.97438 * 12 11 9 14 14 C 1.38653 * 120.37909 * 359.97438 * 13 12 11 15 15 C 1.37905 * 120.44175 * 359.97438 * 14 13 12 16 16 C 1.39118 * 120.04784 * 359.74792 * 15 14 13 17 17 S 1.76199 * 120.18848 * 180.27031 * 16 15 14 18 18 C 1.76197 * 100.00135 * 6.84044 * 17 16 15 19 19 H 1.08001 * 120.00043 * 5.65912 * 18 17 16 20 20 C 1.38805 * 120.00366 * 185.65121 * 18 17 16 21 21 N 1.31554 * 120.00538 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99627 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47363 * 89.99645 * 22 20 18 24 24 H 1.48500 * 109.46984 * 209.99869 * 22 20 18 25 25 H 1.48498 * 109.47006 * 329.99670 * 22 20 18 26 26 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47088 * 299.99416 * 1 2 3 28 28 H 1.09000 * 109.47074 * 59.99951 * 1 2 3 29 29 H 1.08996 * 109.47088 * 240.00584 * 2 1 3 30 30 H 1.09006 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47437 * 299.99826 * 3 2 1 32 32 H 1.09002 * 109.47318 * 60.00272 * 3 2 1 33 33 H 0.96997 * 120.00014 * 265.01014 * 4 2 1 34 34 H 0.97005 * 119.99920 * 180.02562 * 7 5 4 35 35 H 0.97005 * 119.99766 * 359.97438 * 8 7 5 36 36 H 1.08003 * 120.03366 * 359.94792 * 12 11 9 37 37 H 1.07997 * 119.80888 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.78026 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.97609 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 16 1.7405 -2.9293 -0.2059 7 7 2.5970 -2.6674 2.2946 8 7 2.9303 -1.9333 3.4403 9 6 3.3854 -2.5680 4.5387 10 8 3.5019 -3.7786 4.5370 11 6 3.7419 -1.7949 5.7424 12 6 3.6093 -0.4045 5.7494 13 6 3.9438 0.3125 6.8778 14 6 4.4117 -0.3384 8.0091 15 6 4.5477 -1.7106 8.0197 16 6 4.2099 -2.4528 6.8925 17 16 4.3755 -4.2070 6.9044 18 6 4.7887 -4.4639 8.5979 19 1 4.7755 -3.6340 9.2888 20 6 5.1310 -5.7329 9.0440 21 7 5.4391 -5.9249 10.3085 22 14 5.1544 -7.1683 7.8487 23 1 6.5054 -7.2871 7.2440 24 1 4.8247 -8.4216 8.5738 25 1 4.1515 -6.9374 6.7782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.2490 -0.1823 1.9894 34 1 2.6900 -3.6330 2.2932 35 1 2.8376 -0.9677 3.4416 36 1 3.2454 0.1083 4.8713 37 1 3.8408 1.3876 6.8808 38 1 4.6714 0.2332 8.8880 39 1 4.9125 -2.2099 8.9051 40 1 5.6787 -6.8117 10.6201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030059690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = 26.667625 kcal Electronic energy + Delta-G solvation = -23924.635180 eV Core-core repulsion = 20378.554437 eV Total energy + Delta-G solvation = -3546.080743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81807 -40.21927 -39.11116 -37.41130 -34.85915 -34.29735 -32.55399 -31.94249 -31.19009 -28.12533 -28.03449 -25.81320 -24.29790 -23.54444 -23.32669 -22.06734 -20.76899 -19.96704 -19.31036 -18.27402 -17.63740 -17.36192 -17.00417 -16.80514 -16.48596 -16.23560 -15.68706 -15.61931 -15.48423 -15.13788 -14.97170 -14.43370 -14.03923 -13.72275 -13.67344 -13.16192 -13.15715 -13.12448 -13.04978 -12.61151 -12.55928 -12.48218 -12.32625 -12.00459 -11.82506 -11.64059 -11.52491 -11.38055 -10.63713 -10.27102 -10.08324 -9.84588 -9.04179 -8.90788 -8.73724 -8.63325 -6.35972 -0.24616 0.04749 0.17825 0.41463 0.96331 1.01092 1.21451 1.37477 1.57535 1.58035 1.68894 2.11170 2.56617 2.73389 2.87798 2.98942 3.58109 3.83904 3.87921 4.10621 4.18902 4.33672 4.43211 4.53747 4.60558 4.67998 4.76719 4.81099 4.90624 4.96327 4.99621 5.20889 5.25861 5.36815 5.40936 5.42208 5.57821 5.62080 5.67471 5.93401 5.99512 6.13540 6.15227 6.80485 6.90134 8.47482 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.003069 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.902276 B = 9121.855570 C =10819.158751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.156 4.156 4 N -0.658 5.658 5 C 0.586 3.414 6 S -0.687 6.687 7 N -0.465 5.465 8 N -0.527 5.527 9 C 0.563 3.437 10 O -0.535 6.535 11 C -0.168 4.168 12 C -0.050 4.050 13 C -0.143 4.143 14 C -0.064 4.064 15 C -0.168 4.168 16 C -0.048 4.048 17 S 0.027 5.973 18 C -0.584 4.584 19 H 0.084 0.916 20 C 0.056 3.944 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.258 1.258 24 H -0.255 1.255 25 H -0.239 1.239 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.409 0.591 34 H 0.453 0.547 35 H 0.436 0.564 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 22.768 -15.689 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 C -0.214 4.214 4 N -0.290 5.290 5 C 0.221 3.779 6 S -0.563 6.563 7 N -0.192 5.192 8 N -0.281 5.281 9 C 0.352 3.648 10 O -0.411 6.411 11 C -0.183 4.183 12 C -0.070 4.070 13 C -0.165 4.165 14 C -0.085 4.085 15 C -0.192 4.192 16 C -0.166 4.166 17 S 0.284 5.716 18 C -0.731 4.731 19 H 0.102 0.898 20 C -0.151 4.151 21 N -0.540 5.540 22 Si 0.724 3.276 23 H -0.183 1.183 24 H -0.179 1.179 25 H -0.163 1.163 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.249 0.751 34 H 0.302 0.698 35 H 0.282 0.718 36 H 0.189 0.811 37 H 0.192 0.808 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.977 20.280 -17.175 27.476 hybrid contribution 0.770 0.050 2.465 2.583 sum -6.207 20.330 -14.710 25.850 Atomic orbital electron populations 1.22155 0.93798 1.02438 1.03628 1.21631 0.95361 0.93876 0.86163 1.22116 1.02094 0.92151 1.05035 1.45212 1.62786 1.01999 1.19015 1.21920 0.81312 0.87289 0.87376 1.93833 1.74118 1.66955 1.21438 1.44702 1.62233 1.09628 1.02643 1.45014 1.69352 1.08789 1.04939 1.18581 0.76663 0.87378 0.82151 1.90844 1.53442 1.15185 1.81660 1.18956 1.12673 0.94967 0.91682 1.21474 0.95760 0.89731 1.00021 1.21421 1.01253 1.01855 0.91942 1.21615 0.94601 0.92363 0.99898 1.21477 1.04023 0.95886 0.97859 1.22472 0.98982 0.98681 0.96431 1.84039 1.78494 0.99292 1.09806 1.23602 1.53675 0.99446 0.96356 0.89803 1.25550 0.92394 1.00637 0.96532 1.69970 1.43419 1.24720 1.15842 0.86082 0.81044 0.80053 0.80418 1.18271 1.17893 1.16291 0.93650 0.91314 0.89533 0.88642 0.91494 0.88849 0.90088 0.75093 0.69808 0.71758 0.81141 0.80785 0.83381 0.86850 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.43 71.98 0.68 -1.03 16 2 C 0.13 1.33 2.95 44.99 0.13 1.47 16 3 C -0.16 -0.48 9.38 71.98 0.68 0.19 16 4 N -0.66 -7.32 5.04 -329.58 -1.66 -8.98 16 5 C 0.59 11.85 7.94 179.05 1.42 13.27 16 6 S -0.69 -20.37 28.14 -56.49 -1.59 -21.96 16 7 N -0.47 -10.06 6.26 -59.12 -0.37 -10.43 16 8 N -0.53 -9.75 6.21 -175.87 -1.09 -10.84 16 9 C 0.56 16.55 7.87 86.66 0.68 17.23 16 10 O -0.54 -21.12 13.61 -4.07 -0.06 -21.17 16 11 C -0.17 -4.93 5.89 -19.95 -0.12 -5.04 16 12 C -0.05 -0.86 9.53 22.52 0.21 -0.65 16 13 C -0.14 -2.39 10.02 22.27 0.22 -2.17 16 14 C -0.06 -1.59 10.02 22.29 0.22 -1.36 16 15 C -0.17 -6.24 9.22 22.40 0.21 -6.04 16 16 C -0.05 -1.91 6.14 23.04 0.14 -1.77 16 17 S 0.03 1.33 16.53 -56.49 -0.93 0.40 16 18 C -0.58 -33.27 9.54 67.96 0.65 -32.62 16 19 H 0.08 4.99 5.21 -2.91 -0.02 4.98 16 20 C 0.06 3.21 5.50 84.87 0.47 3.68 16 21 N -0.90 -53.75 13.96 21.65 0.30 -53.45 16 22 Si 0.90 43.85 27.74 68.60 1.90 45.76 16 23 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 26 H 0.04 0.79 7.49 -2.38 -0.02 0.77 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 1.49 6.82 -2.39 -0.02 1.47 16 30 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.41 1.77 6.52 -92.71 -0.60 1.16 16 34 H 0.45 11.88 7.98 -213.32 -1.70 10.18 16 35 H 0.44 3.82 4.73 -213.32 -1.01 2.81 16 36 H 0.17 0.84 6.40 -2.91 -0.02 0.82 16 37 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.11 5.05 5.03 -2.91 -0.01 5.03 16 40 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -81.46 357.20 -0.13 -81.59 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -2.23 Total: 13.94 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.60 Total: -14.84 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.82 Total: -83.71 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.76 kcal Atomic # 16 Polarization: -19.03 SS G_CDS: -2.52 Total: -21.56 kcal Total: -81.46 -0.13 -81.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030059690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.253 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds