Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99926 * 2 1 4 4 H 1.48501 * 109.46985 * 270.00386 * 3 2 1 5 5 H 1.48503 * 109.46939 * 30.00002 * 3 2 1 6 6 H 1.48498 * 109.47229 * 150.00177 * 3 2 1 7 7 C 1.38811 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99451 * 0.02562 * 7 2 1 9 9 O 1.34853 * 120.00296 * 179.97438 * 7 2 1 10 10 C 1.34735 * 116.99874 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00373 * 359.97438 * 10 9 7 12 12 C 1.47662 * 119.99540 * 180.02562 * 10 9 7 13 13 C 1.39680 * 120.15733 * 359.97311 * 12 10 9 14 14 C 1.37911 * 119.84794 * 180.02562 * 13 12 10 15 15 C 1.38399 * 120.15143 * 359.74242 * 14 13 12 16 16 C 1.38360 * 120.30816 * 0.51343 * 15 14 13 17 17 S 1.76202 * 119.92215 * 179.76256 * 16 15 14 18 18 O 1.42094 * 106.40313 * 156.18373 * 17 16 15 19 19 O 1.42103 * 106.39917 * 23.26782 * 17 16 15 20 20 N 1.65602 * 107.21943 * 269.72799 * 17 16 15 21 21 C 1.46501 * 119.99842 * 64.99908 * 20 17 16 22 22 C 1.54270 * 110.03162 * 97.09458 * 21 20 17 23 23 C 1.54961 * 104.16191 * 95.75208 * 22 21 20 24 24 C 1.54895 * 102.77671 * 37.88526 * 23 22 21 25 25 C 1.53869 * 110.03042 * 214.30987 * 21 20 17 26 26 C 1.37948 * 120.15553 * 359.49261 * 16 15 14 27 27 H 0.96995 * 120.00301 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.07827 * 0.05045 * 13 12 10 29 29 H 1.07998 * 119.92847 * 180.02562 * 14 13 12 30 30 H 1.08001 * 119.84898 * 180.27973 * 15 14 13 31 31 H 0.96991 * 119.99842 * 245.00069 * 20 17 16 32 32 H 1.09002 * 110.01794 * 335.70101 * 21 20 17 33 33 H 1.08997 * 110.48585 * 214.40010 * 22 21 20 34 34 H 1.09002 * 110.48442 * 337.03893 * 22 21 20 35 35 H 1.09001 * 110.71970 * 279.57802 * 23 22 21 36 36 H 1.08991 * 110.92569 * 156.29385 * 23 22 21 37 37 H 1.08997 * 110.48689 * 203.40743 * 24 23 22 38 38 H 1.09000 * 110.59637 * 80.82119 * 24 23 22 39 39 H 1.08999 * 110.03405 * 359.95371 * 25 21 20 40 40 H 1.08996 * 110.03529 * 121.38320 * 25 21 20 41 41 H 1.07997 * 120.07965 * 180.23528 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0083 -1.2021 0.0005 8 1 1.4682 -2.1374 0.0005 9 8 3.3568 -1.2021 0.0000 10 6 3.9685 -2.4026 0.0000 11 8 3.3068 -3.4216 0.0010 12 6 5.4431 -2.4797 0.0001 13 6 6.2069 -1.3103 -0.0005 14 6 7.5838 -1.3898 -0.0010 15 6 8.2088 -2.6246 0.0044 16 6 7.4584 -3.7870 -0.0003 17 16 8.2647 -5.3537 0.0004 18 8 7.3375 -6.2820 0.5458 19 8 9.5598 -5.1382 0.5442 20 7 8.4885 -5.7906 -1.5812 21 6 9.3755 -5.0023 -2.4404 22 6 10.7711 -5.6567 -2.5011 23 6 10.7319 -6.5144 -3.7912 24 6 9.9203 -5.6274 -4.7677 25 6 8.8344 -4.9839 -3.8807 26 6 6.0804 -3.7224 0.0001 27 1 -0.4850 0.8400 0.0004 28 1 5.7205 -0.3460 -0.0002 29 1 8.1756 -0.4865 -0.0011 30 1 9.2873 -2.6812 0.0086 31 1 8.0324 -6.5683 -1.9387 32 1 9.4566 -3.9844 -2.0590 33 1 11.5470 -4.8946 -2.5734 34 1 10.9350 -6.2876 -1.6275 35 1 10.2192 -7.4592 -3.6107 36 1 11.7376 -6.6891 -4.1732 37 1 9.4640 -6.2371 -5.5475 38 1 10.5570 -4.8602 -5.2083 39 1 7.9124 -5.5621 -3.9407 40 1 8.6530 -3.9572 -4.1984 41 1 5.4959 -4.6305 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030846886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -133.905264 kcal Electronic energy + Delta-G solvation = -27028.602832 eV Core-core repulsion = 23000.513504 eV Total energy + Delta-G solvation = -4028.089328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -39.83250 -38.88672 -38.43800 -37.29360 -35.96085 -35.47558 -33.60893 -32.51866 -31.54342 -31.15705 -29.03872 -27.54908 -26.04410 -23.73086 -23.15558 -21.12613 -20.82277 -20.64481 -19.53546 -18.27860 -18.06683 -17.65635 -16.74995 -16.42477 -16.06174 -15.75921 -15.43480 -15.10981 -14.90366 -14.77502 -14.41357 -14.10017 -13.80929 -13.77437 -13.07310 -12.88831 -12.62727 -12.49741 -12.43499 -12.29677 -12.20838 -12.10775 -11.58460 -11.51569 -11.44142 -11.42000 -11.36160 -11.22519 -10.97541 -10.88425 -10.66435 -10.52753 -9.85724 -9.80228 -9.47437 -9.38895 -9.06063 -8.82388 -6.52894 -4.24157 0.23474 0.64835 1.01364 2.73402 2.99134 3.13037 3.15043 3.23574 3.57433 3.84019 3.94324 4.10396 4.14570 4.24609 4.27995 4.52305 4.73792 4.81646 4.88567 4.99606 5.06679 5.11887 5.12761 5.19173 5.23243 5.28735 5.32390 5.39324 5.55711 5.59271 5.72647 5.74552 5.81486 5.89361 5.98563 6.02840 6.08382 6.25317 6.39999 6.70452 6.71955 7.56589 7.88527 8.47170 8.83705 9.50251 10.54669 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.002903 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.256992 B = 9641.560283 C = 9905.358932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.374 4.374 8 H 0.113 0.887 9 O -0.241 6.241 10 C 0.440 3.560 11 O -0.531 6.531 12 C -0.104 4.104 13 C -0.024 4.024 14 C -0.148 4.148 15 C -0.015 4.015 16 C -0.688 4.688 17 S 2.696 3.304 18 O -0.955 6.955 19 O -0.956 6.956 20 N -1.110 6.110 21 C 0.148 3.852 22 C -0.140 4.140 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.133 4.133 26 C 0.031 3.969 27 H 0.283 0.717 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.419 0.581 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.693 -6.450 -7.789 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.131 0.869 9 O -0.149 6.149 10 C 0.287 3.713 11 O -0.427 6.427 12 C -0.106 4.106 13 C -0.043 4.043 14 C -0.166 4.166 15 C -0.035 4.035 16 C -0.775 4.775 17 S 2.786 3.214 18 O -0.945 6.945 19 O -0.946 6.946 20 N -0.869 5.869 21 C 0.041 3.959 22 C -0.179 4.179 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.172 4.172 26 C 0.011 3.989 27 H 0.093 0.907 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.254 0.746 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 23.626 -6.871 -6.972 25.574 hybrid contribution -0.532 1.197 -0.440 1.382 sum 23.094 -5.673 -7.412 24.909 Atomic orbital electron populations 1.69582 1.05784 1.28788 1.45977 1.24595 0.95056 0.98814 0.95447 0.86215 0.80350 0.81340 0.79044 1.19631 1.20474 1.18342 1.20749 0.75918 0.97226 1.51024 0.86934 1.83502 1.24166 1.30914 1.76300 1.20319 0.87410 0.82941 0.80598 1.90699 1.66186 1.35861 1.49987 1.19506 0.91641 0.94032 1.05404 1.21917 0.93859 0.98999 0.89505 1.21250 0.94542 0.97968 1.02872 1.21029 0.99766 0.91383 0.91318 1.30784 1.04703 1.21283 1.20738 1.01848 0.73731 0.73470 0.72359 1.93623 1.64298 1.60701 1.75857 1.93583 1.38698 1.86194 1.76117 1.55735 1.59574 1.40505 1.31111 1.21429 0.89135 0.94074 0.91269 1.22902 0.96214 0.99922 0.98843 1.22523 1.00186 0.98449 0.95168 1.22376 0.97212 0.99002 0.97715 1.22518 0.99270 1.02203 0.93191 1.20967 0.91835 0.98532 0.87546 0.90694 0.83741 0.84492 0.84156 0.74563 0.89440 0.90435 0.90268 0.91401 0.91452 0.91456 0.91380 0.90384 0.90603 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.96 55.49 0.77 -24.06 16 2 C 0.07 1.83 5.50 -17.52 -0.10 1.74 16 3 Si 0.91 20.43 28.62 -169.99 -4.86 15.56 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.37 -10.87 10.11 30.94 0.31 -10.56 16 8 H 0.11 3.62 7.09 -52.49 -0.37 3.24 16 9 O -0.24 -6.21 7.82 -21.64 -0.17 -6.38 16 10 C 0.44 10.55 7.84 34.58 0.27 10.82 16 11 O -0.53 -14.30 15.59 -19.27 -0.30 -14.60 16 12 C -0.10 -1.92 5.87 -104.98 -0.62 -2.54 16 13 C -0.02 -0.37 9.62 -39.16 -0.38 -0.75 16 14 C -0.15 -1.74 10.03 -39.64 -0.40 -2.13 16 15 C -0.02 -0.18 8.94 -39.48 -0.35 -0.53 16 16 C -0.69 -9.14 5.84 -39.64 -0.23 -9.37 16 17 S 2.70 32.43 5.65 -107.50 -0.61 31.83 16 18 O -0.95 -14.72 17.27 -57.17 -0.99 -15.71 16 19 O -0.96 -12.74 17.02 -57.17 -0.97 -13.71 16 20 N -1.11 -9.56 5.41 -3.94 -0.02 -9.58 16 21 C 0.15 1.11 3.44 -66.81 -0.23 0.88 16 22 C -0.14 -0.97 6.55 -25.03 -0.16 -1.14 16 23 C -0.13 -0.74 6.91 -24.70 -0.17 -0.91 16 24 C -0.13 -0.71 6.83 -25.07 -0.17 -0.88 16 25 C -0.13 -0.88 6.57 -25.62 -0.17 -1.05 16 26 C 0.03 0.51 9.07 -39.16 -0.36 0.15 16 27 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.14 2.17 7.61 -52.48 -0.40 1.77 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.22 7.60 -52.49 -0.40 0.82 16 31 H 0.42 2.92 8.65 -34.47 -0.30 2.63 16 32 H 0.09 0.60 7.32 -51.93 -0.38 0.22 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.15 2.59 7.20 -52.49 -0.38 2.22 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -35.44 362.25 -9.58 -45.02 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.14 Total: 2.43 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.75 Total: -16.26 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.75 Total: -33.64 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -2.43 Total: -50.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.86 Total: 15.56 kcal Atomic # 16 Polarization: 32.43 SS G_CDS: -0.61 Total: 31.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.44 -9.58 -45.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030846886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.888 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds