Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99926 * 2 1 4 4 H 1.48501 * 109.46985 * 270.00386 * 3 2 1 5 5 H 1.48503 * 109.46939 * 30.00002 * 3 2 1 6 6 H 1.48498 * 109.47229 * 150.00177 * 3 2 1 7 7 C 1.38811 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99451 * 0.02562 * 7 2 1 9 9 O 1.34853 * 120.00296 * 179.97438 * 7 2 1 10 10 C 1.34735 * 116.99874 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00373 * 359.97438 * 10 9 7 12 12 C 1.47662 * 119.99540 * 180.02562 * 10 9 7 13 13 C 1.39680 * 120.15733 * 359.97311 * 12 10 9 14 14 C 1.37911 * 119.84794 * 180.02562 * 13 12 10 15 15 C 1.38399 * 120.15143 * 359.74242 * 14 13 12 16 16 C 1.38360 * 120.30816 * 0.51343 * 15 14 13 17 17 S 1.76202 * 119.92215 * 179.76256 * 16 15 14 18 18 O 1.42094 * 106.40313 * 156.18373 * 17 16 15 19 19 O 1.42103 * 106.39917 * 23.26782 * 17 16 15 20 20 N 1.65602 * 107.21943 * 269.72799 * 17 16 15 21 21 C 1.46501 * 119.99842 * 64.99908 * 20 17 16 22 22 C 1.54270 * 110.03162 * 97.09458 * 21 20 17 23 23 C 1.54961 * 104.16191 * 95.75208 * 22 21 20 24 24 C 1.54895 * 102.77671 * 37.88526 * 23 22 21 25 25 C 1.53869 * 110.03042 * 214.30987 * 21 20 17 26 26 C 1.37948 * 120.15553 * 359.49261 * 16 15 14 27 27 H 0.96995 * 120.00301 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.07827 * 0.05045 * 13 12 10 29 29 H 1.07998 * 119.92847 * 180.02562 * 14 13 12 30 30 H 1.08001 * 119.84898 * 180.27973 * 15 14 13 31 31 H 0.96991 * 119.99842 * 245.00069 * 20 17 16 32 32 H 1.09002 * 110.01794 * 335.70101 * 21 20 17 33 33 H 1.08997 * 110.48585 * 214.40010 * 22 21 20 34 34 H 1.09002 * 110.48442 * 337.03893 * 22 21 20 35 35 H 1.09001 * 110.71970 * 279.57802 * 23 22 21 36 36 H 1.08991 * 110.92569 * 156.29385 * 23 22 21 37 37 H 1.08997 * 110.48689 * 203.40743 * 24 23 22 38 38 H 1.09000 * 110.59637 * 80.82119 * 24 23 22 39 39 H 1.08999 * 110.03405 * 359.95371 * 25 21 20 40 40 H 1.08996 * 110.03529 * 121.38320 * 25 21 20 41 41 H 1.07997 * 120.07965 * 180.23528 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0083 -1.2021 0.0005 8 1 1.4682 -2.1374 0.0005 9 8 3.3568 -1.2021 0.0000 10 6 3.9685 -2.4026 0.0000 11 8 3.3068 -3.4216 0.0010 12 6 5.4431 -2.4797 0.0001 13 6 6.2069 -1.3103 -0.0005 14 6 7.5838 -1.3898 -0.0010 15 6 8.2088 -2.6246 0.0044 16 6 7.4584 -3.7870 -0.0003 17 16 8.2647 -5.3537 0.0004 18 8 7.3375 -6.2820 0.5458 19 8 9.5598 -5.1382 0.5442 20 7 8.4885 -5.7906 -1.5812 21 6 9.3755 -5.0023 -2.4404 22 6 10.7711 -5.6567 -2.5011 23 6 10.7319 -6.5144 -3.7912 24 6 9.9203 -5.6274 -4.7677 25 6 8.8344 -4.9839 -3.8807 26 6 6.0804 -3.7224 0.0001 27 1 -0.4850 0.8400 0.0004 28 1 5.7205 -0.3460 -0.0002 29 1 8.1756 -0.4865 -0.0011 30 1 9.2873 -2.6812 0.0086 31 1 8.0324 -6.5683 -1.9387 32 1 9.4566 -3.9844 -2.0590 33 1 11.5470 -4.8946 -2.5734 34 1 10.9350 -6.2876 -1.6275 35 1 10.2192 -7.4592 -3.6107 36 1 11.7376 -6.6891 -4.1732 37 1 9.4640 -6.2371 -5.5475 38 1 10.5570 -4.8602 -5.2083 39 1 7.9124 -5.5621 -3.9407 40 1 8.6530 -3.9572 -4.1984 41 1 5.4959 -4.6305 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030846886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -159.349054 kcal Electronic energy + Delta-G solvation = -27029.706157 eV Core-core repulsion = 23000.513504 eV Total energy + Delta-G solvation = -4029.192654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53905 -39.92235 -39.42932 -38.35764 -37.50452 -37.03752 -34.61824 -34.26757 -32.80875 -32.34855 -29.52495 -28.13361 -28.00636 -25.20968 -24.35649 -22.16729 -21.63566 -21.39188 -20.60604 -20.28132 -19.49970 -18.63361 -18.05788 -17.46106 -17.16711 -16.88038 -16.81947 -16.59355 -16.20866 -16.04269 -15.62398 -15.09288 -14.94674 -14.59941 -14.33247 -14.29089 -14.18602 -13.76920 -13.45202 -13.35125 -13.31013 -13.23962 -13.05395 -12.86072 -12.49110 -12.35482 -12.14422 -12.01479 -11.90749 -11.87710 -11.85304 -11.73469 -11.39511 -11.35868 -10.90961 -10.65960 -10.46284 -10.26229 -8.62349 -6.48887 -0.76008 -0.53165 -0.19899 1.29560 1.30631 1.49243 1.53836 1.93178 2.14037 2.24556 2.40274 2.67176 2.88780 3.23904 3.62476 3.66366 3.75149 3.78661 3.89412 4.00385 4.03416 4.22734 4.31092 4.51376 4.56020 4.62901 4.64960 4.68704 4.74919 4.83972 4.87523 5.07568 5.07886 5.11519 5.15321 5.30396 5.37341 5.39401 5.49056 5.54664 5.60030 5.79993 6.05133 6.38129 6.70960 7.41750 8.50226 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.002903 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.256992 B = 9641.560283 C = 9905.358932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.243 1.243 7 C -0.411 4.411 8 H 0.056 0.944 9 O -0.240 6.240 10 C 0.444 3.556 11 O -0.574 6.574 12 C -0.139 4.139 13 C -0.023 4.023 14 C -0.128 4.128 15 C 0.006 3.994 16 C -0.687 4.687 17 S 2.717 3.283 18 O -0.994 6.994 19 O -0.962 6.962 20 N -1.098 6.098 21 C 0.138 3.862 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.135 4.135 26 C 0.021 3.979 27 H 0.293 0.707 28 H 0.149 0.851 29 H 0.188 0.812 30 H 0.183 0.817 31 H 0.427 0.573 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.471 -4.042 -8.580 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.166 1.166 7 C -0.487 4.487 8 H 0.074 0.926 9 O -0.149 6.149 10 C 0.293 3.707 11 O -0.471 6.471 12 C -0.141 4.141 13 C -0.041 4.041 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.773 4.773 17 S 2.806 3.194 18 O -0.984 6.984 19 O -0.952 6.952 20 N -0.861 5.861 21 C 0.031 3.969 22 C -0.181 4.181 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.174 4.174 26 C 0.001 3.999 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.206 0.794 30 H 0.201 0.799 31 H 0.264 0.736 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 28.401 -4.487 -7.765 29.783 hybrid contribution -1.818 0.234 -0.238 1.848 sum 26.583 -4.253 -8.004 28.086 Atomic orbital electron populations 1.69681 1.07787 1.30637 1.46824 1.25678 0.96030 1.02959 0.93726 0.85076 0.79313 0.75124 0.80205 1.17842 1.18913 1.16579 1.20373 0.77407 0.96037 1.54855 0.92590 1.83498 1.22232 1.31530 1.77644 1.21568 0.89847 0.81854 0.77406 1.90664 1.67988 1.37172 1.51297 1.19259 0.88028 0.96470 1.10342 1.22074 0.95476 0.97611 0.88948 1.21750 0.92884 0.99958 0.99978 1.21670 1.01734 0.90378 0.87497 1.30975 1.03101 1.23084 1.20129 1.01149 0.72814 0.72560 0.72861 1.93575 1.65478 1.61917 1.77449 1.93571 1.38504 1.86144 1.76965 1.55506 1.59702 1.40785 1.30111 1.21733 0.89163 0.94540 0.91419 1.22933 0.96080 1.00263 0.98784 1.22534 1.00748 0.98201 0.94845 1.22371 0.96959 0.99157 0.97517 1.22546 0.99384 1.02607 0.92843 1.20832 0.93339 0.97144 0.88552 0.89735 0.83334 0.79450 0.79939 0.73630 0.88150 0.89023 0.91406 0.91792 0.90547 0.91283 0.90449 0.90926 0.90026 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.61 13.96 21.63 0.30 -54.31 16 2 C 0.02 0.97 5.50 84.89 0.47 1.44 16 3 Si 0.98 41.71 28.62 68.60 1.96 43.68 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.41 -25.49 10.11 67.96 0.69 -24.81 16 8 H 0.06 3.98 7.09 -2.91 -0.02 3.96 16 9 O -0.24 -12.91 7.82 11.33 0.09 -12.82 16 10 C 0.44 22.50 7.84 70.31 0.55 23.05 16 11 O -0.57 -33.51 15.59 19.83 0.31 -33.20 16 12 C -0.14 -5.19 5.87 -20.10 -0.12 -5.31 16 13 C -0.02 -0.63 9.62 22.54 0.22 -0.41 16 14 C -0.13 -2.29 10.03 22.23 0.22 -2.07 16 15 C 0.01 0.11 8.94 22.34 0.20 0.31 16 16 C -0.69 -16.72 5.84 22.23 0.13 -16.59 16 17 S 2.72 61.11 5.65 -56.49 -0.32 60.79 16 18 O -0.99 -30.93 17.27 -128.00 -2.21 -33.14 16 19 O -0.96 -22.82 17.02 -128.00 -2.18 -25.00 16 20 N -1.10 -17.08 5.41 -166.37 -0.90 -17.98 16 21 C 0.14 1.67 3.44 45.72 0.16 1.82 16 22 C -0.14 -1.56 6.55 31.70 0.21 -1.35 16 23 C -0.13 -1.18 6.91 31.91 0.22 -0.96 16 24 C -0.12 -1.08 6.83 31.67 0.22 -0.86 16 25 C -0.13 -1.46 6.57 31.32 0.21 -1.25 16 26 C 0.02 0.70 9.07 22.54 0.20 0.90 16 27 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16 29 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.18 1.86 7.60 -2.91 -0.02 1.84 16 31 H 0.43 5.57 8.65 -96.76 -0.84 4.73 16 32 H 0.10 0.94 7.32 -2.39 -0.02 0.92 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.92 8.04 -2.39 -0.02 0.90 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.87 7.74 -2.39 -0.02 0.85 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.13 4.83 7.20 -2.91 -0.02 4.81 16 Total: -1.00 -84.51 362.25 0.85 -83.66 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.23 Total: 14.42 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.57 Total: -26.08 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -0.60 Total: -72.29 kcal Atomic # 8 Polarization: -100.18 SS G_CDS: -3.99 Total: -104.17 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.96 Total: 43.68 kcal Atomic # 16 Polarization: 61.11 SS G_CDS: -0.32 Total: 60.79 kcal Total: -84.51 0.85 -83.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030846886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.692 kcal (2) G-P(sol) polarization free energy of solvation -84.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds