Wall clock time and date at job start Tue Mar 31 2020 22:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48496 * 109.47349 * 269.99996 * 3 2 1 5 5 H 1.48509 * 109.47134 * 29.99952 * 3 2 1 6 6 H 1.48501 * 109.47136 * 149.99561 * 3 2 1 7 7 C 1.37871 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46988 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47099 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00105 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99664 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99828 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.46843 * 179.97438 * 14 12 11 16 16 S 1.65601 * 119.99993 * 165.00002 * 15 14 12 17 17 O 1.42103 * 106.40174 * 311.46175 * 16 15 14 18 18 O 1.42098 * 106.40628 * 178.54390 * 16 15 14 19 19 C 1.76198 * 107.21764 * 64.99968 * 16 15 14 20 20 C 1.32564 * 120.00032 * 115.00395 * 19 16 15 21 21 C 1.47815 * 120.00319 * 179.97438 * 20 19 16 22 22 C 1.39531 * 120.14192 * 179.97438 * 21 20 19 23 23 C 1.37972 * 119.85483 * 179.97438 * 22 21 20 24 24 C 1.38345 * 120.14331 * 359.97438 * 23 22 21 25 25 C 1.38345 * 120.28513 * 0.02562 * 24 23 22 26 26 C 1.37975 * 120.14228 * 0.02562 * 25 24 23 27 27 H 0.96999 * 120.00337 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47102 * 59.99900 * 9 7 2 29 29 H 1.09001 * 109.46667 * 299.99429 * 9 7 2 30 30 H 1.08992 * 109.47311 * 59.99404 * 10 9 7 31 31 H 1.09000 * 109.47181 * 299.99878 * 10 9 7 32 32 H 1.08995 * 109.47220 * 59.99685 * 14 12 11 33 33 H 1.08996 * 109.47116 * 300.00004 * 14 12 11 34 34 H 0.97000 * 120.00355 * 345.00253 * 15 14 12 35 35 H 1.08005 * 120.00322 * 294.99838 * 19 16 15 36 36 H 1.08005 * 120.00176 * 359.97438 * 20 19 16 37 37 H 1.08000 * 120.07490 * 359.96214 * 22 21 20 38 38 H 1.08004 * 119.93207 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.86073 * 179.74273 * 24 23 22 40 40 H 1.08003 * 119.92854 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.07404 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4736 -2.6365 0.0022 12 6 6.0830 -3.8325 0.0027 13 8 5.4249 -4.8457 0.0028 14 6 7.5879 -3.9113 0.0034 15 7 8.0033 -5.3161 0.0046 16 16 9.5666 -5.7176 -0.3657 17 8 9.8887 -5.0175 -1.5596 18 8 9.6575 -7.1305 -0.2448 19 6 10.5918 -5.0430 0.8986 20 6 11.2733 -5.8496 1.7001 21 6 12.1338 -5.2837 2.7604 22 6 12.8519 -6.1300 3.6059 23 6 13.6538 -5.5954 4.5933 24 6 13.7470 -4.2236 4.7456 25 6 13.0375 -3.3790 3.9105 26 6 12.2313 -3.9010 2.9199 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1501 -0.8891 31 1 3.6579 -3.1505 0.8907 32 1 7.9772 -3.4169 0.8933 33 1 7.9779 -3.4174 -0.8865 34 1 7.3626 -6.0112 0.2222 35 1 10.6651 -3.9724 1.0206 36 1 11.1998 -6.9203 1.5784 37 1 12.7802 -7.2011 3.4879 38 1 14.2105 -6.2493 5.2483 39 1 14.3728 -3.8101 5.5227 40 1 13.1142 -2.3089 4.0348 41 1 11.6783 -3.2407 2.2683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042360063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:13 Heat of formation + Delta-G solvation = -118.450376 kcal Electronic energy + Delta-G solvation = -25222.259075 eV Core-core repulsion = 21194.839921 eV Total energy + Delta-G solvation = -4027.419154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27748 -39.81237 -37.53984 -36.71121 -36.17638 -35.04888 -34.96426 -33.37541 -31.59152 -30.90128 -30.17686 -27.97673 -25.04294 -24.45830 -23.13054 -21.32956 -21.12012 -20.67976 -19.51129 -18.51081 -17.86218 -17.29416 -17.21696 -16.77615 -16.50329 -16.38345 -15.89332 -15.61685 -15.17772 -14.64328 -14.44436 -14.26409 -14.20561 -13.96478 -13.62770 -13.14964 -13.10800 -13.03151 -12.54472 -12.43191 -12.34779 -12.30690 -12.01527 -11.60969 -11.58463 -11.39418 -11.36191 -11.21258 -10.78986 -10.75890 -10.17612 -10.03883 -9.95210 -9.79354 -9.54355 -9.40269 -9.11517 -8.66595 -6.16902 -4.18743 -0.14790 0.13529 0.82289 1.52923 2.25336 2.51785 2.99380 3.24933 3.27337 3.32466 3.35674 3.37135 3.97600 4.12395 4.27725 4.34609 4.38850 4.50657 4.56838 4.62952 4.84425 4.86675 4.89279 4.94839 5.16470 5.25778 5.30564 5.33183 5.45212 5.55054 5.84005 5.84886 5.88273 5.91652 6.04321 6.35042 6.36239 6.53949 6.68083 7.09078 7.14789 7.56705 7.89392 8.34715 8.84339 9.42169 10.95523 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002077 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.540147 B =13477.594500 C =14931.901598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.357 6.357 12 C 0.457 3.543 13 O -0.506 6.506 14 C 0.123 3.877 15 N -1.110 6.110 16 S 2.696 3.304 17 O -0.953 6.953 18 O -0.959 6.959 19 C -0.754 4.754 20 C 0.060 3.940 21 C -0.098 4.098 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.087 4.087 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.430 0.570 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.583 -10.172 8.349 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.272 6.272 12 C 0.298 3.702 13 O -0.394 6.394 14 C -0.005 4.005 15 N -0.873 5.873 16 S 2.786 3.214 17 O -0.943 6.943 18 O -0.949 6.949 19 C -0.861 4.861 20 C 0.040 3.960 21 C -0.100 4.100 22 C -0.106 4.106 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.143 4.143 26 C -0.105 4.105 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.268 0.732 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 30.537 -10.630 7.577 33.210 hybrid contribution 0.026 1.064 0.828 1.348 sum 30.563 -9.566 8.405 33.109 Atomic orbital electron populations 1.69891 1.06293 1.27271 1.49896 1.24943 0.94784 0.99227 0.94089 0.86739 0.80368 0.83228 0.78775 1.20015 1.21177 1.18765 1.20822 0.88198 0.95071 1.52619 0.90636 1.19642 0.97069 0.90000 0.98005 1.23480 0.71588 1.01860 1.02070 1.86467 1.26824 1.31376 1.82566 1.23133 0.91186 0.82671 0.73253 1.90652 1.66678 1.36661 1.45443 1.20674 0.90787 0.82981 1.06039 1.55390 1.29374 1.13726 1.88854 1.01742 0.72104 0.73285 0.74258 1.93628 1.82877 1.74994 1.42805 1.93604 1.85693 1.28544 1.87066 1.33855 1.19252 1.11981 1.20976 1.22093 0.86406 1.00195 0.87273 1.19200 0.99611 0.93802 0.97370 1.21432 0.95025 0.99944 0.94170 1.21180 0.99320 0.95461 0.98512 1.21402 0.98156 0.93691 0.98538 1.21206 0.97085 1.00406 0.95634 1.21472 0.97344 0.94337 0.97378 0.92382 0.95305 0.95664 0.91399 0.91443 0.87335 0.85837 0.73187 0.81856 0.83604 0.85060 0.85360 0.85554 0.85305 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.53 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.66 5.40 37.16 0.20 1.87 16 11 O -0.36 -6.08 10.22 -39.26 -0.40 -6.48 16 12 C 0.46 6.70 8.03 36.01 0.29 6.99 16 13 O -0.51 -8.74 15.48 -18.75 -0.29 -9.03 16 14 C 0.12 1.18 6.81 -5.20 -0.04 1.14 16 15 N -1.11 -10.43 5.93 -11.66 -0.07 -10.50 16 16 S 2.70 25.07 5.89 -107.50 -0.63 24.43 16 17 O -0.95 -11.83 17.49 -57.17 -1.00 -12.83 16 18 O -0.96 -11.05 16.89 -57.17 -0.97 -12.01 16 19 C -0.75 -5.45 9.72 28.82 0.28 -5.17 16 20 C 0.06 0.43 9.42 -37.57 -0.35 0.08 16 21 C -0.10 -0.71 5.87 -105.01 -0.62 -1.32 16 22 C -0.09 -0.53 9.79 -39.20 -0.38 -0.91 16 23 C -0.13 -0.67 10.03 -39.64 -0.40 -1.07 16 24 C -0.10 -0.53 10.04 -39.50 -0.40 -0.93 16 25 C -0.13 -0.74 10.03 -39.64 -0.40 -1.13 16 26 C -0.09 -0.59 9.40 -39.19 -0.37 -0.96 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 29 H 0.03 0.57 7.57 -51.93 -0.39 0.18 16 30 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 31 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.01 7.75 -51.93 -0.40 0.61 16 34 H 0.43 4.19 7.71 -34.47 -0.27 3.93 16 35 H 0.16 0.91 6.04 -52.48 -0.32 0.59 16 36 H 0.15 0.88 7.21 -52.48 -0.38 0.50 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 39 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.13 0.71 6.17 -52.49 -0.32 0.39 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -36.34 370.76 -9.40 -45.74 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.00 Total: -0.17 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.73 Total: -14.85 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.70 Total: -36.65 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.66 Total: -40.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 25.07 SS G_CDS: -0.63 Total: 24.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.34 -9.40 -45.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042360063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.711 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds