Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47327 * 240.00057 * 3 2 1 5 5 H 1.48508 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47447 * 119.99939 * 3 2 1 7 7 C 1.38758 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99716 * 179.97438 * 7 2 1 9 9 O 1.34915 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.34311 * 117.00125 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00211 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47464 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47470 * 180.02562 * 13 12 10 15 15 C 1.38229 * 120.00323 * 89.99837 * 14 13 12 16 16 C 1.38235 * 120.00310 * 180.02562 * 15 14 13 17 17 C 1.38234 * 119.99829 * 0.02562 * 16 15 14 18 18 S 1.76199 * 120.00019 * 179.97438 * 17 16 15 19 19 O 1.42100 * 106.40198 * 203.53954 * 18 17 16 20 20 O 1.42096 * 106.39959 * 336.46020 * 18 17 16 21 21 N 1.65599 * 107.21658 * 90.00010 * 18 17 16 22 22 C 1.46501 * 120.00418 * 65.00023 * 21 18 17 23 23 C 1.53001 * 117.49912 * 213.62148 * 22 21 18 24 24 C 1.52993 * 59.99966 * 252.50851 * 23 22 21 25 25 C 1.38238 * 119.99674 * 0.25365 * 17 16 15 26 26 C 1.38229 * 120.00127 * 359.46868 * 25 17 16 27 27 H 0.96995 * 120.00426 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46985 * 59.99956 * 12 10 9 29 29 H 1.09000 * 109.47177 * 300.00664 * 12 10 9 30 30 H 1.08996 * 109.47320 * 59.99660 * 13 12 10 31 31 H 1.09004 * 109.46778 * 299.99974 * 13 12 10 32 32 H 1.08005 * 119.99920 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.00165 * 179.97438 * 16 15 14 34 34 H 0.97001 * 119.99869 * 244.99817 * 21 18 17 35 35 H 1.09008 * 115.54550 * 359.32793 * 22 21 18 36 36 H 1.09002 * 117.49704 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.49481 * 145.01758 * 23 22 21 38 38 H 1.09001 * 117.49972 * 252.51079 * 24 23 22 39 39 H 1.08997 * 117.51784 * 107.47937 * 24 23 22 40 40 H 1.08004 * 119.99572 * 179.72682 * 25 17 16 41 41 H 1.08004 * 120.00421 * 180.27295 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8393 0.0011 13 6 2.4348 -5.9485 0.0016 14 6 1.7507 -7.2914 0.0016 15 6 1.4373 -7.9074 -1.1955 16 6 0.8093 -9.1389 -1.1955 17 6 0.4942 -9.7541 0.0016 18 16 -0.3069 -11.3234 0.0016 19 8 -0.9751 -11.4328 1.2509 20 8 -0.9733 -11.4337 -1.2485 21 7 0.8792 -12.4791 0.0029 22 6 1.7772 -12.6060 1.1534 23 6 3.2204 -13.0337 0.8792 24 6 2.2436 -14.0126 1.5338 25 6 0.8024 -9.1353 1.1987 26 6 1.4355 -7.9065 1.1987 27 1 -0.4850 0.8400 -0.0004 28 1 0.7580 -4.9300 -0.8886 29 1 0.7586 -4.9295 0.8913 30 1 3.0576 -5.8577 0.8915 31 1 3.0576 -5.8584 -0.8884 32 1 1.6823 -7.4262 -2.1309 33 1 0.5641 -9.6200 -2.1308 34 1 0.9792 -13.0722 -0.7582 35 1 1.6074 -11.8958 1.9628 36 1 3.5015 -13.2212 -0.1571 37 1 4.0005 -12.6049 1.5083 38 1 2.3811 -14.2278 2.5935 39 1 1.8819 -14.8436 0.9284 40 1 0.5523 -9.6139 2.1340 41 1 1.6803 -7.4251 2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044996234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = -110.656244 kcal Electronic energy + Delta-G solvation = -25806.089411 eV Core-core repulsion = 21779.008236 eV Total energy + Delta-G solvation = -4027.081175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -39.73028 -38.91576 -38.25732 -37.46699 -36.15241 -35.52676 -33.93622 -32.58722 -32.16712 -31.26878 -30.05804 -26.02368 -24.49050 -23.16184 -22.84313 -22.50509 -21.73259 -20.04900 -19.74793 -18.45864 -17.78108 -17.70064 -16.93576 -16.70985 -16.05985 -15.42224 -15.33427 -15.10671 -14.76561 -14.67595 -14.45187 -14.33351 -13.78589 -13.46978 -13.35430 -13.04769 -12.69982 -12.49546 -12.48130 -12.36028 -12.30334 -12.23126 -12.01121 -11.73402 -11.56831 -11.52832 -11.19939 -10.98162 -10.85843 -10.80526 -10.48103 -10.39138 -9.84025 -9.57623 -9.38081 -9.24104 -9.01481 -8.60052 -6.43084 -4.11520 0.04092 0.59518 1.11075 2.57102 3.10806 3.16372 3.19523 3.21798 3.35365 3.49899 3.52963 3.91871 4.00053 4.29925 4.38361 4.40159 4.45868 4.49871 4.64215 4.66776 4.90775 5.07633 5.12953 5.14037 5.18491 5.28256 5.36483 5.42001 5.50046 5.62085 5.68959 5.72001 5.81453 5.84869 5.99301 6.01648 6.27665 6.42575 6.44190 6.65117 6.74945 7.36770 7.92890 8.67819 9.05386 9.82622 10.74767 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.001950 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.126316 B =14354.310106 C =14845.523477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.384 4.384 8 H 0.095 0.905 9 O -0.214 6.214 10 C 0.396 3.604 11 O -0.559 6.559 12 C -0.098 4.098 13 C -0.076 4.076 14 C -0.013 4.013 15 C -0.136 4.136 16 C -0.016 4.016 17 C -0.686 4.686 18 S 2.700 3.300 19 O -0.955 6.955 20 O -0.958 6.958 21 N -1.089 6.089 22 C 0.083 3.917 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.021 4.021 26 C -0.136 4.136 27 H 0.270 0.730 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.418 0.582 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -27.211 1.173 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.113 0.887 9 O -0.121 6.121 10 C 0.243 3.757 11 O -0.457 6.457 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.013 4.013 15 C -0.155 4.155 16 C -0.036 4.036 17 C -0.774 4.774 18 S 2.790 3.210 19 O -0.944 6.944 20 O -0.948 6.948 21 N -0.845 5.845 22 C -0.025 4.025 23 C -0.228 4.228 24 C -0.225 4.225 25 C -0.040 4.040 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.253 0.747 35 H 0.155 0.845 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.156 0.844 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.475 -27.034 1.320 27.179 hybrid contribution 1.063 1.080 -0.384 1.563 sum 3.538 -25.953 0.936 26.210 Atomic orbital electron populations 1.69981 1.06008 1.27843 1.46353 1.25350 0.95821 0.98912 0.96175 0.85734 0.78616 0.79425 0.79323 1.19492 1.20365 1.19492 1.21168 0.92322 0.79884 1.52637 0.88743 1.83876 1.39408 1.13429 1.75378 1.23091 0.86663 0.87277 0.78695 1.90552 1.15733 1.88174 1.51271 1.21020 0.98206 0.89417 1.04917 1.20548 0.97060 0.88491 1.05274 1.20407 0.92479 0.95203 0.93225 1.21275 1.00215 0.95584 0.98448 1.20865 0.91914 0.94487 0.96311 1.30684 1.22318 1.24557 0.99808 1.01695 0.72660 0.72997 0.73601 1.93599 1.70565 1.85984 1.44296 1.93603 1.71079 1.86335 1.43807 1.55172 1.51788 1.50677 1.26839 1.21330 0.91159 0.99936 0.90099 1.23427 0.93062 1.03690 1.02639 1.23385 1.03388 0.93465 1.02296 1.20877 0.92235 0.94632 0.96243 1.21266 1.00174 0.95611 0.98430 0.91984 0.88885 0.88885 0.89497 0.89519 0.84696 0.84373 0.74702 0.84525 0.88206 0.87739 0.87724 0.88240 0.84403 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.67 55.48 0.76 -24.61 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.38 -11.31 9.65 30.92 0.30 -11.01 16 8 H 0.09 2.79 6.86 -52.48 -0.36 2.43 16 9 O -0.21 -6.08 9.75 -20.69 -0.20 -6.28 16 10 C 0.40 9.44 7.91 36.00 0.28 9.73 16 11 O -0.56 -14.46 15.22 -19.05 -0.29 -14.75 16 12 C -0.10 -1.66 5.79 -27.89 -0.16 -1.82 16 13 C -0.08 -1.07 4.63 -27.88 -0.13 -1.20 16 14 C -0.01 -0.15 5.13 -104.62 -0.54 -0.69 16 15 C -0.14 -1.50 9.70 -39.59 -0.38 -1.89 16 16 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 17 C -0.69 -6.98 5.95 -39.58 -0.24 -7.21 16 18 S 2.70 26.07 5.72 -107.50 -0.61 25.46 16 19 O -0.95 -11.73 17.04 -57.17 -0.97 -12.71 16 20 O -0.96 -11.72 17.28 -57.17 -0.99 -12.71 16 21 N -1.09 -7.05 6.04 -4.89 -0.03 -7.08 16 22 C 0.08 0.49 6.47 -67.93 -0.44 0.05 16 23 C -0.19 -0.89 10.46 -26.73 -0.28 -1.17 16 24 C -0.19 -0.87 10.46 -26.74 -0.28 -1.15 16 25 C -0.02 -0.21 9.52 -39.58 -0.38 -0.58 16 26 C -0.14 -1.47 9.70 -39.59 -0.38 -1.85 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 31 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.14 1.19 7.62 -52.49 -0.40 0.79 16 34 H 0.42 1.90 8.96 -34.47 -0.31 1.59 16 35 H 0.14 0.72 8.11 -51.92 -0.42 0.30 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.14 1.11 7.61 -52.48 -0.40 0.71 16 41 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -37.55 374.48 -10.06 -47.61 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.24 Total: 1.49 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -3.10 Total: -18.27 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.73 Total: -31.69 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.45 Total: -46.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 26.07 SS G_CDS: -0.61 Total: 25.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.55 -10.06 -47.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044996234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.047 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds