Wall clock time and date at job start Tue Mar 31 2020 21:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47327 * 240.00057 * 3 2 1 5 5 H 1.48508 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47447 * 119.99939 * 3 2 1 7 7 C 1.38758 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99716 * 179.97438 * 7 2 1 9 9 O 1.34915 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.34311 * 117.00125 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00211 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47464 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47470 * 180.02562 * 13 12 10 15 15 C 1.38229 * 120.00323 * 89.99837 * 14 13 12 16 16 C 1.38235 * 120.00310 * 180.02562 * 15 14 13 17 17 C 1.38234 * 119.99829 * 0.02562 * 16 15 14 18 18 S 1.76199 * 120.00019 * 179.97438 * 17 16 15 19 19 O 1.42100 * 106.40198 * 203.53954 * 18 17 16 20 20 O 1.42096 * 106.39959 * 336.46020 * 18 17 16 21 21 N 1.65599 * 107.21658 * 90.00010 * 18 17 16 22 22 C 1.46501 * 120.00418 * 65.00023 * 21 18 17 23 23 C 1.53001 * 117.49912 * 213.62148 * 22 21 18 24 24 C 1.52993 * 59.99966 * 252.50851 * 23 22 21 25 25 C 1.38238 * 119.99674 * 0.25365 * 17 16 15 26 26 C 1.38229 * 120.00127 * 359.46868 * 25 17 16 27 27 H 0.96995 * 120.00426 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46985 * 59.99956 * 12 10 9 29 29 H 1.09000 * 109.47177 * 300.00664 * 12 10 9 30 30 H 1.08996 * 109.47320 * 59.99660 * 13 12 10 31 31 H 1.09004 * 109.46778 * 299.99974 * 13 12 10 32 32 H 1.08005 * 119.99920 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.00165 * 179.97438 * 16 15 14 34 34 H 0.97001 * 119.99869 * 244.99817 * 21 18 17 35 35 H 1.09008 * 115.54550 * 359.32793 * 22 21 18 36 36 H 1.09002 * 117.49704 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.49481 * 145.01758 * 23 22 21 38 38 H 1.09001 * 117.49972 * 252.51079 * 24 23 22 39 39 H 1.08997 * 117.51784 * 107.47937 * 24 23 22 40 40 H 1.08004 * 119.99572 * 179.72682 * 25 17 16 41 41 H 1.08004 * 120.00421 * 180.27295 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8393 0.0011 13 6 2.4348 -5.9485 0.0016 14 6 1.7507 -7.2914 0.0016 15 6 1.4373 -7.9074 -1.1955 16 6 0.8093 -9.1389 -1.1955 17 6 0.4942 -9.7541 0.0016 18 16 -0.3069 -11.3234 0.0016 19 8 -0.9751 -11.4328 1.2509 20 8 -0.9733 -11.4337 -1.2485 21 7 0.8792 -12.4791 0.0029 22 6 1.7772 -12.6060 1.1534 23 6 3.2204 -13.0337 0.8792 24 6 2.2436 -14.0126 1.5338 25 6 0.8024 -9.1353 1.1987 26 6 1.4355 -7.9065 1.1987 27 1 -0.4850 0.8400 -0.0004 28 1 0.7580 -4.9300 -0.8886 29 1 0.7586 -4.9295 0.8913 30 1 3.0576 -5.8577 0.8915 31 1 3.0576 -5.8584 -0.8884 32 1 1.6823 -7.4262 -2.1309 33 1 0.5641 -9.6200 -2.1308 34 1 0.9792 -13.0722 -0.7582 35 1 1.6074 -11.8958 1.9628 36 1 3.5015 -13.2212 -0.1571 37 1 4.0005 -12.6049 1.5083 38 1 2.3811 -14.2278 2.5935 39 1 1.8819 -14.8436 0.9284 40 1 0.5523 -9.6139 2.1340 41 1 1.6803 -7.4251 2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044996234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:46 Heat of formation + Delta-G solvation = -136.160649 kcal Electronic energy + Delta-G solvation = -25807.195365 eV Core-core repulsion = 21779.008236 eV Total energy + Delta-G solvation = -4028.187129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13348 -40.36005 -38.73798 -38.28068 -37.45621 -37.02871 -35.19434 -34.30737 -33.10672 -32.07432 -31.23303 -27.83059 -26.01185 -23.94776 -23.18623 -22.98386 -22.86565 -21.44978 -20.73684 -19.89447 -19.19575 -18.63566 -18.42101 -17.53417 -17.13942 -16.79628 -16.53444 -16.24042 -16.07878 -15.86484 -15.61763 -15.32979 -14.69443 -14.66644 -14.35529 -14.06506 -13.87958 -13.66634 -13.34891 -13.26344 -13.22699 -13.13163 -13.09603 -13.05492 -12.87743 -12.47751 -12.33209 -12.32545 -12.17848 -12.00614 -11.93191 -11.79104 -11.30394 -11.08596 -10.70999 -10.22335 -10.05037 -10.01024 -8.54872 -6.35170 -0.72128 -0.25873 0.29935 1.31194 1.33685 1.49825 1.64292 1.88558 2.10731 2.39560 2.68449 2.81861 2.96465 2.99178 3.25903 3.70804 3.76959 3.89151 3.91305 3.98008 4.00700 4.05558 4.10360 4.15427 4.33985 4.42139 4.47569 4.69138 4.76549 4.83272 4.86592 4.99133 5.05310 5.09650 5.10030 5.12465 5.18469 5.26979 5.29740 5.50292 5.81475 5.82890 6.00094 6.65945 6.90242 7.75909 8.65598 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.001950 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.126316 B =14354.310106 C =14845.523477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.422 4.422 8 H 0.083 0.917 9 O -0.248 6.248 10 C 0.395 3.605 11 O -0.582 6.582 12 C -0.088 4.088 13 C -0.064 4.064 14 C -0.025 4.025 15 C -0.141 4.141 16 C -0.023 4.023 17 C -0.685 4.685 18 S 2.722 3.278 19 O -0.981 6.981 20 O -0.985 6.985 21 N -1.077 6.077 22 C 0.060 3.940 23 C -0.183 4.183 24 C -0.183 4.183 25 C -0.024 4.024 26 C -0.139 4.139 27 H 0.279 0.721 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.428 0.572 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.157 0.843 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.938 -28.122 1.380 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.101 0.899 9 O -0.156 6.156 10 C 0.244 3.756 11 O -0.480 6.480 12 C -0.126 4.126 13 C -0.102 4.102 14 C -0.025 4.025 15 C -0.160 4.160 16 C -0.043 4.043 17 C -0.773 4.773 18 S 2.813 3.187 19 O -0.971 6.971 20 O -0.975 6.975 21 N -0.836 5.836 22 C -0.048 4.048 23 C -0.223 4.223 24 C -0.222 4.222 25 C -0.043 4.043 26 C -0.158 4.158 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.174 0.826 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.096 -27.981 1.520 28.193 hybrid contribution 0.908 1.174 -0.437 1.547 sum 4.004 -26.807 1.083 27.126 Atomic orbital electron populations 1.70069 1.07684 1.29452 1.46935 1.26563 0.96890 1.02470 0.94726 0.84682 0.77572 0.74299 0.79800 1.18576 1.18517 1.18553 1.21380 0.92161 0.81232 1.54965 0.89945 1.83904 1.40536 1.14382 1.76804 1.24441 0.86723 0.88347 0.76132 1.90520 1.17080 1.88705 1.51691 1.21168 0.98949 0.86056 1.06393 1.20389 0.96181 0.88675 1.04937 1.20209 0.93704 0.94418 0.94164 1.21450 1.00029 0.95861 0.98678 1.21089 0.91719 0.94357 0.97096 1.30811 1.21736 1.24756 0.99993 1.00856 0.72618 0.72914 0.72336 1.93563 1.71801 1.86405 1.45335 1.93562 1.72384 1.86759 1.44842 1.54833 1.51348 1.49814 1.27635 1.21587 0.91869 1.01207 0.90105 1.23495 0.92506 1.03189 1.03079 1.23493 1.02734 0.92949 1.03032 1.21129 0.91773 0.94399 0.97030 1.21459 0.99853 0.95866 0.98628 0.91210 0.87307 0.87213 0.89840 0.90003 0.83617 0.82889 0.73486 0.84131 0.87802 0.87036 0.86822 0.87761 0.82567 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.61 13.67 21.63 0.30 -53.32 16 2 C -0.01 -0.36 5.49 84.88 0.47 0.10 16 3 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.42 -25.49 9.65 67.94 0.66 -24.84 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.25 -14.49 9.75 14.92 0.15 -14.34 16 10 C 0.40 19.16 7.91 71.23 0.56 19.72 16 11 O -0.58 -30.63 15.22 20.77 0.32 -30.31 16 12 C -0.09 -2.94 5.79 29.85 0.17 -2.76 16 13 C -0.06 -1.75 4.63 29.85 0.14 -1.61 16 14 C -0.02 -0.55 5.13 -19.87 -0.10 -0.65 16 15 C -0.14 -2.90 9.70 22.27 0.22 -2.69 16 16 C -0.02 -0.45 9.52 22.27 0.21 -0.24 16 17 C -0.69 -12.90 5.95 22.27 0.13 -12.76 16 18 S 2.72 49.45 5.72 -56.49 -0.32 49.12 16 19 O -0.98 -23.13 17.04 -128.00 -2.18 -25.31 16 20 O -0.99 -23.22 17.28 -128.00 -2.21 -25.44 16 21 N -1.08 -12.30 6.04 -169.38 -1.02 -13.32 16 22 C 0.06 0.60 6.47 44.99 0.29 0.89 16 23 C -0.18 -1.35 10.46 30.59 0.32 -1.03 16 24 C -0.18 -1.35 10.46 30.59 0.32 -1.03 16 25 C -0.02 -0.44 9.52 22.27 0.21 -0.23 16 26 C -0.14 -2.77 9.70 22.27 0.22 -2.55 16 27 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 29 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.08 2.30 8.04 -2.39 -0.02 2.29 16 31 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.15 2.39 7.62 -2.91 -0.02 2.37 16 34 H 0.43 3.21 8.96 -96.74 -0.87 2.34 16 35 H 0.14 1.25 8.11 -2.38 -0.02 1.23 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.16 2.21 7.61 -2.91 -0.02 2.19 16 41 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -81.70 374.48 1.06 -80.65 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.20 Total: 16.64 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.81 Total: -29.68 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.73 Total: -66.64 kcal Atomic # 8 Polarization: -91.47 SS G_CDS: -3.93 Total: -95.40 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 49.45 SS G_CDS: -0.32 Total: 49.12 kcal Total: -81.70 1.06 -80.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044996234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.515 kcal (2) G-P(sol) polarization free energy of solvation -81.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds