Wall clock time and date at job start Tue Mar 31 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48494 * 109.47472 * 269.99882 * 3 2 1 5 5 H 1.48498 * 109.46957 * 30.00073 * 3 2 1 6 6 H 1.48503 * 109.47058 * 149.99885 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00538 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47429 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.34704 * 117.00337 * 180.02562 * 11 10 9 13 13 O 1.21468 * 119.99782 * 0.02562 * 12 11 10 14 14 C 1.47748 * 120.00419 * 179.97438 * 12 11 10 15 15 C 1.39667 * 120.11269 * 359.97438 * 14 12 11 16 16 C 1.37959 * 119.99775 * 180.02562 * 15 14 12 17 17 C 1.38256 * 120.23906 * 359.72114 * 16 15 14 18 18 C 1.38988 * 120.22424 * 0.55444 * 17 16 15 19 19 N 1.39709 * 120.00555 * 179.71897 * 18 17 16 20 20 C 1.47067 * 126.29630 * 334.73146 * 19 18 17 21 21 C 1.54066 * 110.10571 * 208.98911 * 20 19 18 22 22 C 1.55604 * 104.29372 * 314.79794 * 21 20 19 23 23 S 1.66997 * 126.30494 * 154.68365 * 19 18 17 24 24 O 1.42098 * 105.13313 * 61.11369 * 23 19 18 25 25 O 1.42098 * 105.13505 * 291.43858 * 23 19 18 26 26 C 1.38670 * 119.99594 * 359.44765 * 18 17 16 27 27 H 0.97003 * 119.99627 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 59.99464 * 9 7 2 29 29 H 1.09007 * 109.46780 * 300.00297 * 9 7 2 30 30 H 1.08997 * 109.47005 * 60.00318 * 10 9 7 31 31 H 1.08992 * 109.47220 * 299.99751 * 10 9 7 32 32 H 1.08000 * 119.99783 * 359.97438 * 15 14 12 33 33 H 1.08008 * 119.88363 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.88984 * 180.27784 * 17 16 15 35 35 H 1.09005 * 109.35590 * 88.81091 * 20 19 18 36 36 H 1.08996 * 109.35699 * 329.16850 * 20 19 18 37 37 H 1.09005 * 110.46468 * 73.50208 * 21 20 19 38 38 H 1.09001 * 110.46387 * 195.96694 * 21 20 19 39 39 H 1.09000 * 111.16192 * 155.78319 * 22 21 20 40 40 H 1.08994 * 111.16561 * 280.04741 * 22 21 20 41 41 H 1.08011 * 120.11482 * 180.25373 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 8 5.4734 -2.6368 -0.0001 12 6 6.0850 -3.8370 -0.0008 13 8 5.4234 -4.8557 -0.0018 14 6 7.5604 -3.9144 -0.0014 15 6 8.3235 -2.7446 -0.0019 16 6 9.7010 -2.8197 -0.0031 17 6 10.3313 -4.0502 0.0021 18 6 9.5814 -5.2204 -0.0032 19 7 10.2230 -6.4614 -0.0039 20 6 11.5767 -6.7413 -0.5059 21 6 11.6661 -8.1960 -1.0055 22 6 10.9664 -9.0282 0.1077 23 16 9.5945 -7.8998 0.5661 24 8 8.4416 -8.1416 -0.2284 25 8 9.5116 -7.7359 1.9752 26 6 8.1962 -5.1561 -0.0020 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6584 -3.1503 -0.8903 31 1 3.6578 -3.1507 0.8896 32 1 7.8351 -1.7814 -0.0023 33 1 10.2893 -1.9139 -0.0039 34 1 11.4100 -4.1024 0.0057 35 1 12.2983 -6.5901 0.2970 36 1 11.8048 -6.0625 -1.3276 37 1 11.1383 -8.3067 -1.9528 38 1 12.7077 -8.4988 -1.1127 39 1 10.5859 -9.9707 -0.2860 40 1 11.6353 -9.1977 0.9514 41 1 7.6115 -6.0643 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045739281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:51 Heat of formation + Delta-G solvation = -117.603026 kcal Electronic energy + Delta-G solvation = -26466.500294 eV Core-core repulsion = 22439.117884 eV Total energy + Delta-G solvation = -4027.382410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41129 -39.32725 -37.59579 -37.51314 -36.36021 -36.10566 -33.96189 -33.26210 -31.55480 -30.67092 -29.67948 -26.96299 -25.69662 -24.19013 -23.10827 -22.64687 -20.78158 -20.53411 -19.61289 -18.52974 -17.73305 -17.20505 -16.71317 -16.54676 -16.16922 -16.12419 -15.97568 -15.45139 -15.18184 -14.85511 -14.50370 -14.18761 -14.08778 -13.95306 -13.65076 -13.20127 -13.14695 -12.83795 -12.54979 -12.46239 -12.41636 -12.25249 -12.08698 -12.02138 -11.52138 -11.43123 -11.24421 -11.06270 -10.78460 -10.66935 -10.56830 -9.97497 -9.90644 -9.67126 -9.31849 -9.28104 -8.59604 -8.44679 -6.09962 -4.10986 -0.44114 0.58925 1.09247 1.78498 2.66488 2.97313 3.04491 3.23322 3.30031 3.37217 3.41610 3.57265 3.71375 3.80095 4.16141 4.22595 4.41072 4.57977 4.62130 4.67255 4.77007 4.82016 4.93801 4.97808 5.04557 5.07183 5.16607 5.23503 5.35706 5.62946 5.98317 5.99417 6.02074 6.10128 6.14593 6.19379 6.49237 6.66670 6.78348 7.20962 7.25144 7.65277 8.13471 8.42965 8.92178 9.49437 11.02634 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002294 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.841725 B =12201.591188 C =12992.140155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.354 6.354 12 C 0.499 3.501 13 O -0.502 6.502 14 C -0.077 4.077 15 C -0.086 4.086 16 C -0.100 4.100 17 C -0.122 4.122 18 C 0.193 3.807 19 N -0.933 5.933 20 C 0.071 3.929 21 C -0.125 4.125 22 C -0.597 4.597 23 S 2.559 3.441 24 O -0.936 6.936 25 O -0.939 6.939 26 C -0.115 4.115 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.423 -15.346 -2.023 36.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.010 3.990 11 O -0.271 6.271 12 C 0.343 3.657 13 O -0.392 6.392 14 C -0.079 4.079 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.144 4.144 18 C 0.098 3.902 19 N -0.762 5.762 20 C -0.054 4.054 21 C -0.164 4.164 22 C -0.728 4.728 23 S 2.656 3.344 24 O -0.925 6.925 25 O -0.929 6.929 26 C -0.136 4.136 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 32.105 -15.670 -1.548 35.759 hybrid contribution 0.860 0.577 -0.312 1.081 sum 32.965 -15.093 -1.861 36.303 Atomic orbital electron populations 1.69900 1.06282 1.27168 1.50164 1.24941 0.94777 0.99187 0.94173 0.86739 0.80439 0.83261 0.78691 1.20084 1.21214 1.18723 1.20846 0.88270 0.95072 1.52277 0.90612 1.19631 0.97010 0.90079 0.97909 1.23443 0.71853 1.01695 1.02041 1.86513 1.26494 1.31105 1.82957 1.20993 0.88595 0.82483 0.73647 1.90841 1.66780 1.36342 1.45226 1.18966 0.90298 0.93648 1.05001 1.21561 0.93786 0.98498 0.96636 1.21013 0.94278 0.97349 0.99223 1.21056 0.99950 0.90943 1.02480 1.16792 0.90077 0.83356 0.99939 1.54981 1.25116 1.21190 1.74883 1.22279 0.83763 0.97457 1.01922 1.22666 1.04893 0.91054 0.97762 1.30881 1.18720 1.13635 1.09521 1.07033 0.76199 0.75919 0.75227 1.93685 1.44750 1.83957 1.70134 1.93664 1.85716 1.83805 1.29707 1.21208 0.92367 0.99109 1.00937 0.92459 0.95318 0.95748 0.91511 0.91477 0.83608 0.84485 0.85080 0.89624 0.87911 0.88257 0.86484 0.83536 0.83648 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.83 5.41 37.16 0.20 2.03 16 11 O -0.35 -7.05 9.47 -40.50 -0.38 -7.43 16 12 C 0.50 9.55 7.90 34.62 0.27 9.83 16 13 O -0.50 -11.02 16.13 -19.24 -0.31 -11.33 16 14 C -0.08 -1.19 5.87 -105.01 -0.62 -1.81 16 15 C -0.09 -1.04 9.61 -39.15 -0.38 -1.42 16 16 C -0.10 -0.90 10.02 -39.68 -0.40 -1.30 16 17 C -0.12 -1.05 9.49 -39.30 -0.37 -1.43 16 18 C 0.19 2.16 6.48 -83.83 -0.54 1.61 16 19 N -0.93 -7.90 3.47 -57.71 -0.20 -8.10 16 20 C 0.07 0.24 5.96 -3.18 -0.02 0.22 16 21 C -0.12 -0.21 6.79 -24.79 -0.17 -0.37 16 22 C -0.60 -1.77 7.51 38.54 0.29 -1.48 16 23 S 2.56 23.73 5.66 -107.50 -0.61 23.12 16 24 O -0.94 -12.40 16.36 -57.41 -0.94 -13.34 16 25 O -0.94 -12.22 18.13 -57.41 -1.04 -13.26 16 26 C -0.11 -1.70 8.99 -38.95 -0.35 -2.05 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 29 H 0.02 0.58 7.57 -51.92 -0.39 0.19 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.15 1.69 7.61 -52.49 -0.40 1.29 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.13 0.69 7.60 -52.49 -0.40 0.29 16 35 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.10 0.22 8.07 -51.93 -0.42 -0.20 16 37 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.12 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.15 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.15 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.15 2.46 5.71 -52.48 -0.30 2.16 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -39.36 360.10 -9.84 -49.20 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.25 Total: -4.24 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.63 Total: -10.05 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.57 Total: -34.99 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.67 Total: -45.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 23.73 SS G_CDS: -0.61 Total: 23.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.36 -9.84 -49.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045739281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.403 kcal (2) G-P(sol) polarization free energy of solvation -39.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds