Wall clock time and date at job start Tue Mar 31 2020 22:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48494 * 109.47472 * 269.99882 * 3 2 1 5 5 H 1.48498 * 109.46957 * 30.00073 * 3 2 1 6 6 H 1.48503 * 109.47058 * 149.99885 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00538 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47429 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.34704 * 117.00337 * 180.02562 * 11 10 9 13 13 O 1.21468 * 119.99782 * 0.02562 * 12 11 10 14 14 C 1.47748 * 120.00419 * 179.97438 * 12 11 10 15 15 C 1.39667 * 120.11269 * 359.97438 * 14 12 11 16 16 C 1.37959 * 119.99775 * 180.02562 * 15 14 12 17 17 C 1.38256 * 120.23906 * 359.72114 * 16 15 14 18 18 C 1.38988 * 120.22424 * 0.55444 * 17 16 15 19 19 N 1.39709 * 120.00555 * 179.71897 * 18 17 16 20 20 C 1.47067 * 126.29630 * 334.73146 * 19 18 17 21 21 C 1.54066 * 110.10571 * 208.98911 * 20 19 18 22 22 C 1.55604 * 104.29372 * 314.79794 * 21 20 19 23 23 S 1.66997 * 126.30494 * 154.68365 * 19 18 17 24 24 O 1.42098 * 105.13313 * 61.11369 * 23 19 18 25 25 O 1.42098 * 105.13505 * 291.43858 * 23 19 18 26 26 C 1.38670 * 119.99594 * 359.44765 * 18 17 16 27 27 H 0.97003 * 119.99627 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 59.99464 * 9 7 2 29 29 H 1.09007 * 109.46780 * 300.00297 * 9 7 2 30 30 H 1.08997 * 109.47005 * 60.00318 * 10 9 7 31 31 H 1.08992 * 109.47220 * 299.99751 * 10 9 7 32 32 H 1.08000 * 119.99783 * 359.97438 * 15 14 12 33 33 H 1.08008 * 119.88363 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.88984 * 180.27784 * 17 16 15 35 35 H 1.09005 * 109.35590 * 88.81091 * 20 19 18 36 36 H 1.08996 * 109.35699 * 329.16850 * 20 19 18 37 37 H 1.09005 * 110.46468 * 73.50208 * 21 20 19 38 38 H 1.09001 * 110.46387 * 195.96694 * 21 20 19 39 39 H 1.09000 * 111.16192 * 155.78319 * 22 21 20 40 40 H 1.08994 * 111.16561 * 280.04741 * 22 21 20 41 41 H 1.08011 * 120.11482 * 180.25373 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 8 5.4734 -2.6368 -0.0001 12 6 6.0850 -3.8370 -0.0008 13 8 5.4234 -4.8557 -0.0018 14 6 7.5604 -3.9144 -0.0014 15 6 8.3235 -2.7446 -0.0019 16 6 9.7010 -2.8197 -0.0031 17 6 10.3313 -4.0502 0.0021 18 6 9.5814 -5.2204 -0.0032 19 7 10.2230 -6.4614 -0.0039 20 6 11.5767 -6.7413 -0.5059 21 6 11.6661 -8.1960 -1.0055 22 6 10.9664 -9.0282 0.1077 23 16 9.5945 -7.8998 0.5661 24 8 8.4416 -8.1416 -0.2284 25 8 9.5116 -7.7359 1.9752 26 6 8.1962 -5.1561 -0.0020 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6584 -3.1503 -0.8903 31 1 3.6578 -3.1507 0.8896 32 1 7.8351 -1.7814 -0.0023 33 1 10.2893 -1.9139 -0.0039 34 1 11.4100 -4.1024 0.0057 35 1 12.2983 -6.5901 0.2970 36 1 11.8048 -6.0625 -1.3276 37 1 11.1383 -8.3067 -1.9528 38 1 12.7077 -8.4988 -1.1127 39 1 10.5859 -9.9707 -0.2860 40 1 11.6353 -9.1977 0.9514 41 1 7.6115 -6.0643 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045739281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:50 Heat of formation + Delta-G solvation = -147.351007 kcal Electronic energy + Delta-G solvation = -26467.790263 eV Core-core repulsion = 22439.117884 eV Total energy + Delta-G solvation = -4028.672379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74563 -40.36948 -38.33257 -38.16016 -37.72908 -37.13532 -35.43291 -34.48926 -32.95356 -32.27509 -30.43457 -27.52482 -27.32320 -25.43280 -23.90750 -23.32018 -22.62212 -21.68678 -20.53554 -19.45322 -19.04482 -18.27558 -18.06125 -17.66615 -17.60699 -17.14660 -16.92415 -16.42433 -16.28469 -15.77941 -15.42528 -15.36185 -15.01472 -14.93350 -14.76051 -14.45254 -14.24059 -13.94017 -13.54155 -13.38260 -13.29303 -13.24459 -13.20462 -12.91383 -12.69494 -12.55287 -12.49819 -12.47556 -12.08012 -11.82007 -11.68471 -11.58166 -11.56934 -11.50455 -11.30917 -10.82206 -10.20528 -9.22019 -8.35239 -6.44353 -1.01940 -0.46394 0.23018 1.18560 1.38137 1.38436 1.40739 1.53189 1.55302 2.34588 2.50557 2.60075 2.85045 2.99253 3.23145 3.45076 3.49816 3.74757 3.79711 3.97874 4.07504 4.10320 4.13625 4.20293 4.26825 4.38914 4.42611 4.55095 4.58802 4.73011 4.80504 4.91721 4.96789 5.01267 5.17687 5.25532 5.27025 5.32208 5.36350 5.44186 5.49390 5.89656 6.14014 6.55447 6.61329 7.20476 8.81043 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002294 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.841725 B =12201.591188 C =12992.140155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.546 4.546 8 H 0.031 0.969 9 C 0.000 4.000 10 C 0.091 3.909 11 O -0.346 6.346 12 C 0.496 3.504 13 O -0.546 6.546 14 C -0.108 4.108 15 C -0.089 4.089 16 C -0.082 4.082 17 C -0.099 4.099 18 C 0.192 3.808 19 N -0.935 5.935 20 C 0.055 3.945 21 C -0.121 4.121 22 C -0.541 4.541 23 S 2.517 3.483 24 O -1.000 7.000 25 O -0.997 6.997 26 C -0.150 4.150 27 H 0.271 0.729 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.151 0.849 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.179 0.821 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.276 -13.977 -2.796 42.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.164 1.164 7 C -0.584 4.584 8 H 0.050 0.950 9 C -0.037 4.037 10 C 0.018 3.982 11 O -0.262 6.262 12 C 0.343 3.657 13 O -0.439 6.439 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.101 4.101 17 C -0.121 4.121 18 C 0.097 3.903 19 N -0.763 5.763 20 C -0.068 4.068 21 C -0.161 4.161 22 C -0.678 4.678 23 S 2.621 3.379 24 O -0.990 6.990 25 O -0.987 6.987 26 C -0.171 4.171 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.201 0.799 34 H 0.199 0.801 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.197 0.803 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 38.947 -14.295 -2.311 41.552 hybrid contribution -1.109 -0.046 -0.110 1.116 sum 37.838 -14.341 -2.421 40.537 Atomic orbital electron populations 1.70053 1.08429 1.28713 1.51220 1.26016 0.95750 1.03803 0.93257 0.85539 0.79561 0.77205 0.79670 1.18557 1.20538 1.16441 1.21100 0.90705 0.93807 1.52759 0.95042 1.19457 0.94125 0.91279 0.98838 1.23055 0.73642 1.00457 1.01091 1.86489 1.24678 1.31763 1.83250 1.21883 0.90406 0.81390 0.72056 1.90810 1.68050 1.37459 1.47533 1.18827 0.87598 0.95500 1.09044 1.21734 0.95383 0.97100 0.96562 1.21529 0.92812 0.99323 0.96393 1.21625 1.02123 0.89334 0.98992 1.16958 0.88828 0.85640 0.98922 1.54891 1.27060 1.19685 1.74700 1.22830 0.81150 0.99045 1.03747 1.22916 1.07134 0.89390 0.96616 1.30654 1.14135 1.11740 1.11272 1.07969 0.78112 0.77695 0.74095 1.93606 1.49858 1.84990 1.70521 1.93582 1.87389 1.85124 1.32599 1.21121 0.94525 0.97576 1.03926 0.91993 0.94251 0.94228 0.92525 0.92686 0.83117 0.79868 0.80090 0.86598 0.85866 0.88357 0.81911 0.81305 0.80345 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.01 0.57 5.47 84.65 0.46 1.04 16 3 Si 0.96 44.05 27.47 68.60 1.88 45.93 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 7 C -0.55 -32.83 9.66 25.60 0.25 -32.58 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 0.02 4.42 29.85 0.13 0.15 16 10 C 0.09 4.28 5.41 71.98 0.39 4.67 16 11 O -0.35 -14.37 9.47 -56.14 -0.53 -14.90 16 12 C 0.50 20.61 7.90 70.34 0.56 21.17 16 13 O -0.55 -26.75 16.13 19.94 0.32 -26.43 16 14 C -0.11 -3.52 5.87 -20.11 -0.12 -3.64 16 15 C -0.09 -2.04 9.61 22.55 0.22 -1.82 16 16 C -0.08 -1.13 10.02 22.21 0.22 -0.91 16 17 C -0.10 -1.28 9.49 22.45 0.21 -1.07 16 18 C 0.19 4.14 6.48 38.17 0.25 4.39 16 19 N -0.93 -14.51 3.47 -336.51 -1.17 -15.67 16 20 C 0.05 0.10 5.96 86.63 0.52 0.62 16 21 C -0.12 0.25 6.79 31.85 0.22 0.47 16 22 C -0.54 -1.10 7.51 72.88 0.55 -0.55 16 23 S 2.52 48.77 5.66 -56.49 -0.32 48.45 16 24 O -1.00 -30.14 16.36 -127.77 -2.09 -32.23 16 25 O -1.00 -28.08 18.13 -127.77 -2.32 -30.40 16 26 C -0.15 -4.80 8.99 22.68 0.20 -4.59 16 27 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 28 H 0.04 1.87 7.20 -2.38 -0.02 1.86 16 29 H 0.04 1.85 7.57 -2.38 -0.02 1.83 16 30 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.15 3.24 7.61 -2.91 -0.02 3.22 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.18 0.57 7.60 -2.91 -0.02 0.55 16 35 H 0.12 -0.41 8.14 -2.38 -0.02 -0.43 16 36 H 0.12 -0.20 8.07 -2.39 -0.02 -0.22 16 37 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 38 H 0.16 -1.58 8.14 -2.39 -0.02 -1.60 16 39 H 0.17 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.18 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.11 4.33 5.71 -2.90 -0.02 4.31 16 Total: -1.00 -98.81 360.10 1.13 -97.69 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.00 Total: 0.03 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.05 Total: -12.66 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -0.87 Total: -75.47 kcal Atomic # 8 Polarization: -99.35 SS G_CDS: -4.62 Total: -103.96 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 16 Polarization: 48.77 SS G_CDS: -0.32 Total: 48.45 kcal Total: -98.81 1.13 -97.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045739281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.666 kcal (2) G-P(sol) polarization free energy of solvation -98.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds