Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 117.00082 * 2 1 4 4 C 1.38552 * 120.08234 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.01382 * 180.25463 * 4 3 2 6 6 C 1.38273 * 120.17863 * 359.43807 * 5 4 3 7 7 C 1.50698 * 119.92180 * 180.28289 * 6 5 4 8 8 C 1.38198 * 120.16626 * 0.55568 * 6 5 4 9 9 C 1.38725 * 119.98452 * 359.72823 * 8 6 5 10 10 N 1.40123 * 120.09377 * 179.97438 * 9 8 6 11 11 C 1.34770 * 119.99866 * 325.37027 * 10 9 8 12 12 O 1.21296 * 120.00280 * 4.45359 * 11 10 9 13 13 C 1.50702 * 120.00060 * 184.44688 * 11 10 9 14 14 O 1.45196 * 109.47032 * 180.02562 * 13 11 10 15 15 C 1.34232 * 116.99754 * 180.02562 * 14 13 11 16 16 O 1.20831 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.50707 * 120.00056 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47042 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00114 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99433 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47257 * 89.99825 * 23 21 19 25 25 H 1.48495 * 109.47065 * 210.00321 * 23 21 19 26 26 H 1.48507 * 109.46889 * 330.00231 * 23 21 19 27 27 H 1.08998 * 109.47100 * 59.99103 * 1 2 3 28 28 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46676 * 299.99740 * 1 2 3 30 30 H 1.07995 * 119.99191 * 359.97018 * 4 3 2 31 31 H 1.07995 * 119.90722 * 179.72408 * 5 4 3 32 32 H 1.09000 * 109.47410 * 270.28155 * 7 6 5 33 33 H 1.09001 * 109.46909 * 30.27336 * 7 6 5 34 34 H 1.08994 * 109.47909 * 150.27692 * 7 6 5 35 35 H 1.07996 * 120.01134 * 179.74363 * 8 6 5 36 36 H 0.96996 * 119.99823 * 145.36574 * 10 9 8 37 37 H 1.08997 * 109.47213 * 300.00051 * 13 11 10 38 38 H 1.08996 * 109.46915 * 59.99871 * 13 11 10 39 39 H 1.09005 * 109.46988 * 299.99991 * 17 15 14 40 40 H 1.08995 * 109.46930 * 60.00196 * 17 15 14 41 41 H 0.97004 * 120.00269 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 -0.0048 6 6 3.3032 3.6807 0.0011 7 6 3.9829 5.0257 0.0017 8 6 4.0615 2.5254 0.0007 9 6 3.4373 1.2864 0.0001 10 7 4.2039 0.1135 -0.0008 11 6 5.3763 0.0753 -0.6644 12 8 5.8071 1.0785 -1.1929 13 6 6.1522 -1.2138 -0.7499 14 8 7.3698 -0.9964 -1.5103 15 6 8.1790 -2.0537 -1.6804 16 8 7.8796 -3.1256 -1.2097 17 6 9.4605 -1.9043 -2.4593 18 16 10.3233 -3.4945 -2.5121 19 6 11.7414 -3.0421 -3.4550 20 1 11.8561 -2.0264 -3.8042 21 6 12.7114 -3.9905 -3.7482 22 7 12.5718 -5.2281 -3.3222 23 14 14.2152 -3.5106 -4.7472 24 1 15.2921 -3.0540 -3.8325 25 1 14.6893 -4.6846 -5.5230 26 1 13.8593 -2.4115 -5.6804 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2148 2.3196 0.0005 31 1 1.3339 4.5111 -0.0089 32 1 4.1467 5.3505 -1.0258 33 1 3.3524 5.7512 0.5158 34 1 4.9410 4.9485 0.5154 35 1 5.1397 2.5869 0.0011 36 1 3.8908 -0.6709 0.4762 37 1 6.4070 -1.5517 0.2546 38 1 5.5446 -1.9714 -1.2448 39 1 9.2327 -1.5810 -3.4750 40 1 10.0953 -1.1620 -1.9754 41 1 13.2496 -5.8910 -3.5274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046026491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = -127.531455 kcal Electronic energy + Delta-G solvation = -25411.334844 eV Core-core repulsion = 21383.521905 eV Total energy + Delta-G solvation = -4027.812939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19137 -40.25588 -39.38009 -37.89588 -36.16457 -35.19667 -32.48507 -32.10923 -31.06890 -29.91953 -28.32811 -27.91301 -26.25264 -25.54473 -23.40939 -21.72924 -21.10711 -20.73016 -18.74025 -18.10671 -17.69813 -17.31386 -16.84603 -16.77289 -16.38015 -16.12671 -15.52420 -15.10558 -14.84223 -14.72738 -14.55064 -14.18212 -14.08577 -13.93669 -13.86050 -13.38532 -12.75248 -12.68688 -12.63010 -12.42219 -12.31673 -12.08125 -11.92810 -11.62210 -11.29856 -11.10033 -11.06470 -10.82530 -10.70898 -10.63944 -10.19207 -10.00484 -9.88658 -9.11324 -8.87303 -8.37559 -8.13519 -6.61000 -6.27380 -4.00177 0.89812 1.03733 2.07187 2.26443 2.56869 2.79075 2.96973 3.21533 3.26441 3.30780 3.39970 3.55783 4.14960 4.25951 4.41375 4.50558 4.65316 4.71767 4.78785 4.90173 4.92229 4.97680 5.03166 5.06598 5.08706 5.12025 5.33226 5.38383 5.48686 5.52872 5.63384 5.77028 5.77981 5.88301 6.08054 6.09357 6.31645 6.46264 6.50165 6.94594 7.01378 7.56106 7.78010 8.05605 8.30871 9.18375 10.80107 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.001855 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.549106 B =15092.071064 C =16107.125613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.097 3.903 4 C -0.188 4.188 5 C -0.096 4.096 6 C -0.104 4.104 7 C -0.110 4.110 8 C -0.085 4.085 9 C 0.124 3.876 10 N -0.663 5.663 11 C 0.517 3.483 12 O -0.497 6.497 13 C 0.050 3.950 14 O -0.337 6.337 15 C 0.482 3.518 16 O -0.487 6.487 17 C -0.127 4.127 18 S -0.058 6.058 19 C -0.535 4.535 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.922 3.078 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.416 0.584 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.956 16.196 9.462 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.050 3.950 4 C -0.207 4.207 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.166 4.166 8 C -0.105 4.105 9 C 0.030 3.970 10 N -0.311 5.311 11 C 0.304 3.696 12 O -0.370 6.370 13 C -0.028 4.028 14 O -0.253 6.253 15 C 0.323 3.677 16 O -0.372 6.372 17 C -0.275 4.275 18 S 0.169 5.831 19 C -0.684 4.684 20 H 0.095 0.905 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.748 3.252 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.195 1.195 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.166 0.834 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.832 15.158 9.651 31.467 hybrid contribution 0.632 1.000 -0.853 1.458 sum -25.200 16.159 8.798 31.202 Atomic orbital electron populations 1.23059 0.78019 1.04109 1.01364 1.86024 1.21655 1.26407 1.89139 1.18753 0.90359 0.85076 1.00767 1.21020 0.99848 0.91720 1.08119 1.20826 0.93924 0.97031 0.99673 1.19765 0.93374 0.95456 1.01848 1.20731 1.00440 0.92923 1.02545 1.21125 1.01472 0.89336 0.98567 1.16983 0.86581 0.86889 1.06561 1.43107 1.20881 1.14469 1.52621 1.20338 0.80863 0.90436 0.77973 1.90747 1.67049 1.35204 1.44002 1.22493 0.86249 0.95087 0.98963 1.86598 1.30918 1.40159 1.67670 1.23466 0.84690 0.81389 0.78122 1.90678 1.72984 1.27564 1.45977 1.23313 0.93177 1.08935 1.02056 1.85380 1.22334 1.03731 1.71688 1.22848 1.06822 0.99244 1.39442 0.90493 1.25004 0.98292 0.94421 0.95812 1.70008 1.34769 1.02104 1.43394 0.86111 0.81259 0.78222 0.79603 1.20180 1.20721 1.19548 0.92587 0.88076 0.92609 0.85045 0.85639 0.91067 0.91613 0.91385 0.83371 0.74749 0.87758 0.87688 0.87624 0.87622 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.68 10.05 -19.68 -0.20 -2.88 16 3 C 0.10 0.92 6.70 -39.07 -0.26 0.66 16 4 C -0.19 -1.48 9.04 -39.46 -0.36 -1.83 16 5 C -0.10 -0.75 9.69 -39.57 -0.38 -1.14 16 6 C -0.10 -0.96 5.88 -104.62 -0.62 -1.57 16 7 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 8 C -0.08 -0.95 8.35 -39.42 -0.33 -1.28 16 9 C 0.12 1.36 6.32 -83.49 -0.53 0.83 16 10 N -0.66 -6.70 5.19 -9.75 -0.05 -6.75 16 11 C 0.52 6.54 7.76 -10.99 -0.09 6.46 16 12 O -0.50 -8.04 13.92 -14.12 -0.20 -8.23 16 13 C 0.05 0.62 5.95 36.01 0.21 0.84 16 14 O -0.34 -5.61 9.75 -45.91 -0.45 -6.06 16 15 C 0.48 9.21 7.98 36.01 0.29 9.49 16 16 O -0.49 -10.25 15.61 -18.75 -0.29 -10.55 16 17 C -0.13 -2.62 6.27 36.01 0.23 -2.39 16 18 S -0.06 -1.53 20.58 -107.50 -2.21 -3.74 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 20 H 0.08 2.05 7.80 -52.48 -0.41 1.65 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.15 1.86 6.20 -52.49 -0.33 1.53 16 36 H 0.42 3.07 8.57 -40.82 -0.35 2.72 16 37 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.11 1.15 8.13 -51.93 -0.42 0.72 16 39 H 0.11 2.04 8.14 -51.91 -0.42 1.62 16 40 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -35.55 373.51 -7.48 -43.04 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.14 Total: 0.31 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.28 Total: -2.00 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.68 Total: -31.74 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.14 Total: -27.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.55 -7.48 -43.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046026491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.492 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds