Wall clock time and date at job start Tue Mar 31 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48495 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47023 * 300.00314 * 3 2 1 6 6 H 1.48501 * 109.47171 * 59.99901 * 3 2 1 7 7 C 1.38755 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.34317 * 116.99680 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00195 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99509 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.53015 * 300.08245 * 12 10 9 14 14 C 1.53041 * 109.49840 * 60.16437 * 12 10 9 15 15 C 1.53049 * 109.53717 * 181.31440 * 14 12 10 16 16 C 1.53629 * 109.24075 * 298.50779 * 15 14 12 17 17 N 1.46924 * 108.53976 * 54.85986 * 16 15 14 18 18 S 1.65601 * 120.63233 * 126.36867 * 17 16 15 19 19 O 1.42098 * 106.40290 * 156.17477 * 18 17 16 20 20 O 1.42107 * 106.39817 * 23.25511 * 18 17 16 21 21 C 1.76199 * 107.21620 * 269.71724 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 C 1.46926 * 118.73982 * 306.08661 * 17 16 15 28 28 H 0.96997 * 120.00303 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46255 * 301.33130 * 14 12 10 30 30 H 1.08997 * 109.46001 * 61.30812 * 14 12 10 31 31 H 1.09001 * 109.49491 * 58.58346 * 15 14 12 32 32 H 1.09002 * 109.49130 * 178.65148 * 15 14 12 33 33 H 1.08996 * 109.73682 * 295.12098 * 16 15 14 34 34 H 1.09002 * 109.65845 * 174.54915 * 16 15 14 35 35 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 36 36 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 39 39 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 40 40 H 1.08994 * 109.58974 * 173.65085 * 27 17 16 41 41 H 1.08999 * 109.59420 * 294.08204 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8896 2.3964 -1.2124 6 1 1.8896 2.3965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 1 0.7564 -4.9303 0.8875 14 6 0.5100 -4.9682 -1.2529 15 6 -0.2108 -6.3182 -1.2381 16 6 0.8300 -7.4481 -1.2552 17 7 1.7566 -7.2468 -0.1328 18 16 2.0357 -8.4602 0.9589 19 8 3.3088 -8.1983 1.5332 20 8 1.7171 -9.6766 0.2969 21 6 0.8573 -8.2761 2.2559 22 6 -0.3672 -8.9121 2.1725 23 6 -1.2919 -8.7672 3.1898 24 6 -0.9916 -7.9873 4.2910 25 6 0.2310 -7.3475 4.3720 26 6 1.1576 -7.4963 3.3570 27 6 2.4355 -5.9505 -0.0010 28 1 -0.4850 0.8400 0.0004 29 1 -0.2257 -4.1640 -1.2679 30 1 1.1385 -4.9021 -2.1410 31 1 -0.8203 -6.3953 -0.3377 32 1 -0.8493 -6.3993 -2.1178 33 1 1.3830 -7.4250 -2.1942 34 1 0.3289 -8.4100 -1.1473 35 1 -0.6019 -9.5214 1.3122 36 1 -2.2488 -9.2637 3.1245 37 1 -1.7139 -7.8745 5.0859 38 1 0.4640 -6.7346 5.2302 39 1 2.1143 -6.9995 3.4222 40 1 2.9941 -5.9240 0.9345 41 1 3.1168 -5.8077 -0.8398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046271159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:37 Heat of formation + Delta-G solvation = -127.851993 kcal Electronic energy + Delta-G solvation = -27884.944747 eV Core-core repulsion = 23857.117908 eV Total energy + Delta-G solvation = -4027.826839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.54584 -39.27274 -37.88326 -37.37150 -35.92675 -35.17977 -32.61673 -32.07625 -31.51053 -31.27547 -31.10346 -25.76831 -24.54920 -23.83878 -23.38939 -22.94777 -21.13386 -19.64824 -18.97522 -18.32901 -17.74768 -17.57997 -16.49935 -16.23471 -16.06658 -15.16778 -14.91910 -14.85849 -14.73107 -14.46333 -14.40160 -14.09084 -13.76716 -13.64402 -13.28309 -13.22222 -12.96028 -12.55347 -12.47349 -12.15564 -12.07445 -11.93800 -11.62379 -11.50243 -11.32929 -11.22164 -11.06618 -10.90701 -10.73137 -10.51076 -10.42129 -10.32630 -9.81288 -9.64666 -9.27186 -9.14791 -8.90704 -8.60778 -6.44254 -4.11736 0.23020 0.64024 1.06727 2.76393 3.07160 3.17766 3.25007 3.32305 3.47487 3.68173 3.89922 4.13414 4.45514 4.58126 4.65205 4.68632 4.73503 4.95997 4.98480 5.07013 5.11275 5.12659 5.22556 5.28975 5.43446 5.45196 5.54854 5.67163 5.76217 5.83417 5.90367 5.94772 5.98356 6.08668 6.11339 6.21212 6.37314 6.43722 6.51584 6.59417 6.78495 7.37771 7.92451 8.67558 9.05182 9.82177 10.73657 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003443 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.233291 B = 8129.959088 C = 8734.141796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.211 6.211 10 C 0.403 3.597 11 O -0.554 6.554 12 C -0.084 4.084 13 H 0.097 0.903 14 C -0.109 4.109 15 C -0.133 4.133 16 C 0.118 3.882 17 N -0.994 5.994 18 S 2.691 3.309 19 O -0.952 6.952 20 O -0.958 6.958 21 C -0.676 4.676 22 C -0.022 4.022 23 C -0.143 4.143 24 C -0.065 4.065 25 C -0.139 4.139 26 C -0.018 4.018 27 C 0.140 3.860 28 H 0.269 0.731 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -16.948 3.470 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.118 6.118 10 C 0.248 3.752 11 O -0.452 6.452 12 C -0.105 4.105 13 H 0.115 0.885 14 C -0.146 4.146 15 C -0.171 4.171 16 C -0.007 4.007 17 N -0.832 5.832 18 S 2.782 3.218 19 O -0.942 6.942 20 O -0.949 6.949 21 C -0.763 4.763 22 C -0.041 4.041 23 C -0.161 4.161 24 C -0.084 4.084 25 C -0.157 4.157 26 C -0.037 4.037 27 C 0.015 3.985 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.115 0.885 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.455 -17.407 3.404 18.287 hybrid contribution -0.363 1.287 0.542 1.442 sum -4.818 -16.120 3.945 17.281 Atomic orbital electron populations 1.69992 1.05987 1.27556 1.46680 1.25316 0.95789 0.98827 0.96196 0.85639 0.79545 0.80134 0.78112 1.18914 1.20180 1.20206 1.21287 0.92430 0.79844 1.52231 0.88608 1.83868 1.39316 1.13290 1.75311 1.22910 0.86518 0.86985 0.78767 1.90575 1.15589 1.88054 1.50952 1.21077 0.97651 0.90438 1.01351 0.88531 1.21453 0.99093 0.97575 0.96507 1.22025 0.97567 0.94669 1.02888 1.21635 0.90713 0.99099 0.89262 1.57718 1.57439 1.28603 1.39462 1.02034 0.73936 0.72873 0.72937 1.93596 1.37435 1.84937 1.78250 1.93562 1.85305 1.42094 1.73913 1.31095 1.15192 1.11838 1.18167 1.20908 0.90913 0.93968 0.98292 1.21289 0.99919 1.00338 0.94592 1.21507 0.96265 0.93465 0.97131 1.21351 0.94168 1.00594 0.99619 1.21013 0.99157 0.92342 0.91219 1.21288 0.93010 0.79317 1.04838 0.92163 0.89693 0.91269 0.91289 0.90289 0.90369 0.89244 0.84408 0.85108 0.85262 0.84884 0.84134 0.88488 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.76 13.67 55.48 0.76 -24.00 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.03 9.65 30.92 0.30 -10.74 16 8 H 0.10 2.81 6.86 -52.49 -0.36 2.45 16 9 O -0.21 -5.82 9.63 -20.72 -0.20 -6.02 16 10 C 0.40 9.47 7.20 36.00 0.26 9.73 16 11 O -0.55 -14.31 15.16 -19.05 -0.29 -14.60 16 12 C -0.08 -1.45 2.78 -91.65 -0.25 -1.70 16 13 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 14 C -0.11 -1.61 5.10 -26.68 -0.14 -1.75 16 15 C -0.13 -1.44 6.10 -26.38 -0.16 -1.60 16 16 C 0.12 1.24 6.41 -3.48 -0.02 1.22 16 17 N -0.99 -12.68 3.28 -113.27 -0.37 -13.05 16 18 S 2.69 35.63 5.69 -107.50 -0.61 35.01 16 19 O -0.95 -15.24 16.00 -57.17 -0.91 -16.16 16 20 O -0.96 -13.69 15.99 -57.17 -0.91 -14.61 16 21 C -0.68 -8.07 5.97 -39.58 -0.24 -8.31 16 22 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 23 C -0.14 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.07 -0.58 10.05 -39.58 -0.40 -0.98 16 25 C -0.14 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.02 -0.21 9.52 -39.58 -0.38 -0.59 16 27 C 0.14 2.16 5.01 -3.71 -0.02 2.14 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.79 7.12 -51.93 -0.37 0.43 16 35 H 0.14 1.19 7.62 -52.48 -0.40 0.79 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.61 7.62 -52.49 -0.40 1.21 16 40 H 0.10 1.53 7.13 -51.93 -0.37 1.16 16 41 H 0.09 1.40 7.95 -51.93 -0.41 0.99 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -35.66 358.76 -9.72 -45.39 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.25 Total: 2.24 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.31 Total: -15.56 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.39 Total: -37.05 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -2.32 Total: -51.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 35.63 SS G_CDS: -0.61 Total: 35.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.66 -9.72 -45.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046271159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.466 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds