Wall clock time and date at job start Tue Mar 31 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48495 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47023 * 300.00314 * 3 2 1 6 6 H 1.48501 * 109.47171 * 59.99901 * 3 2 1 7 7 C 1.38755 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.34317 * 116.99680 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00195 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99509 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.53015 * 300.08245 * 12 10 9 14 14 C 1.53041 * 109.49840 * 60.16437 * 12 10 9 15 15 C 1.53049 * 109.53717 * 181.31440 * 14 12 10 16 16 C 1.53629 * 109.24075 * 298.50779 * 15 14 12 17 17 N 1.46924 * 108.53976 * 54.85986 * 16 15 14 18 18 S 1.65601 * 120.63233 * 126.36867 * 17 16 15 19 19 O 1.42098 * 106.40290 * 156.17477 * 18 17 16 20 20 O 1.42107 * 106.39817 * 23.25511 * 18 17 16 21 21 C 1.76199 * 107.21620 * 269.71724 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 C 1.46926 * 118.73982 * 306.08661 * 17 16 15 28 28 H 0.96997 * 120.00303 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46255 * 301.33130 * 14 12 10 30 30 H 1.08997 * 109.46001 * 61.30812 * 14 12 10 31 31 H 1.09001 * 109.49491 * 58.58346 * 15 14 12 32 32 H 1.09002 * 109.49130 * 178.65148 * 15 14 12 33 33 H 1.08996 * 109.73682 * 295.12098 * 16 15 14 34 34 H 1.09002 * 109.65845 * 174.54915 * 16 15 14 35 35 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 36 36 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 39 39 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 40 40 H 1.08994 * 109.58974 * 173.65085 * 27 17 16 41 41 H 1.08999 * 109.59420 * 294.08204 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8896 2.3964 -1.2124 6 1 1.8896 2.3965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 1 0.7564 -4.9303 0.8875 14 6 0.5100 -4.9682 -1.2529 15 6 -0.2108 -6.3182 -1.2381 16 6 0.8300 -7.4481 -1.2552 17 7 1.7566 -7.2468 -0.1328 18 16 2.0357 -8.4602 0.9589 19 8 3.3088 -8.1983 1.5332 20 8 1.7171 -9.6766 0.2969 21 6 0.8573 -8.2761 2.2559 22 6 -0.3672 -8.9121 2.1725 23 6 -1.2919 -8.7672 3.1898 24 6 -0.9916 -7.9873 4.2910 25 6 0.2310 -7.3475 4.3720 26 6 1.1576 -7.4963 3.3570 27 6 2.4355 -5.9505 -0.0010 28 1 -0.4850 0.8400 0.0004 29 1 -0.2257 -4.1640 -1.2679 30 1 1.1385 -4.9021 -2.1410 31 1 -0.8203 -6.3953 -0.3377 32 1 -0.8493 -6.3993 -2.1178 33 1 1.3830 -7.4250 -2.1942 34 1 0.3289 -8.4100 -1.1473 35 1 -0.6019 -9.5214 1.3122 36 1 -2.2488 -9.2637 3.1245 37 1 -1.7139 -7.8745 5.0859 38 1 0.4640 -6.7346 5.2302 39 1 2.1143 -6.9995 3.4222 40 1 2.9941 -5.9240 0.9345 41 1 3.1168 -5.8077 -0.8398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046271159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:36 Heat of formation + Delta-G solvation = -151.439390 kcal Electronic energy + Delta-G solvation = -27885.967573 eV Core-core repulsion = 23857.117908 eV Total energy + Delta-G solvation = -4028.849665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31814 -40.03058 -39.27629 -38.49814 -37.18135 -37.05662 -34.35338 -33.66642 -32.31708 -32.28172 -31.99161 -27.76384 -25.67028 -25.33056 -24.19954 -23.70973 -22.42113 -21.19720 -20.03646 -19.86475 -19.34275 -18.65880 -18.21946 -17.16978 -17.03037 -16.73646 -16.55818 -16.26896 -15.96794 -15.57432 -15.53471 -15.39484 -14.83986 -14.61413 -14.51763 -14.45675 -14.04485 -13.90570 -13.58990 -13.29399 -13.28958 -13.25472 -13.09418 -13.08179 -12.60218 -12.38122 -12.22720 -12.18888 -12.13744 -11.99987 -11.91750 -11.76520 -11.49542 -10.92554 -10.69233 -10.43668 -10.09936 -10.03580 -8.54021 -6.33107 -0.78101 -0.18722 0.30895 1.28596 1.34669 1.52091 1.62597 1.73200 2.12912 2.49415 2.69115 2.75630 2.97255 3.16312 3.50054 3.73003 3.81527 3.93527 3.93870 3.99593 4.10303 4.17985 4.25767 4.38794 4.41974 4.47885 4.70680 4.72707 4.74452 4.77813 4.92091 4.95457 5.00665 5.08232 5.12349 5.17579 5.23358 5.27435 5.36799 5.38685 5.48598 5.83599 5.87345 6.65782 6.91820 7.76391 8.66448 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003443 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.233291 B = 8129.959088 C = 8734.141796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.000 4.000 3 Si 1.013 2.987 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.080 0.920 9 O -0.238 6.238 10 C 0.401 3.599 11 O -0.581 6.581 12 C -0.075 4.075 13 H 0.109 0.891 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.109 3.891 17 N -0.990 5.990 18 S 2.703 3.297 19 O -0.988 6.988 20 O -0.968 6.968 21 C -0.685 4.685 22 C -0.030 4.030 23 C -0.141 4.141 24 C -0.063 4.063 25 C -0.149 4.149 26 C -0.044 4.044 27 C 0.149 3.851 28 H 0.278 0.722 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -17.784 3.611 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.201 4.201 3 Si 0.832 3.168 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.098 0.902 9 O -0.145 6.145 10 C 0.248 3.752 11 O -0.479 6.479 12 C -0.096 4.096 13 H 0.127 0.873 14 C -0.144 4.144 15 C -0.160 4.160 16 C -0.015 4.015 17 N -0.828 5.828 18 S 2.797 3.203 19 O -0.979 6.979 20 O -0.958 6.958 21 C -0.774 4.774 22 C -0.050 4.050 23 C -0.159 4.159 24 C -0.081 4.081 25 C -0.168 4.168 26 C -0.064 4.064 27 C 0.023 3.977 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.482 -18.279 3.514 19.710 hybrid contribution 0.218 1.446 0.552 1.563 sum -6.264 -16.832 4.066 18.415 Atomic orbital electron populations 1.70063 1.07497 1.29238 1.46895 1.26442 0.96831 1.02100 0.94717 0.84627 0.77812 0.75074 0.79246 1.19059 1.18404 1.18495 1.21437 0.92110 0.81272 1.54825 0.90248 1.83893 1.40127 1.14013 1.76501 1.24208 0.86519 0.88136 0.76292 1.90541 1.17111 1.88638 1.51646 1.21189 0.98167 0.86906 1.03308 0.87314 1.21452 0.98351 0.99705 0.94869 1.21996 0.97484 0.91706 1.04777 1.21951 0.90473 1.00155 0.88897 1.57614 1.57818 1.26931 1.40434 1.01417 0.73512 0.72467 0.72859 1.93546 1.40062 1.85359 1.78893 1.93538 1.85438 1.42437 1.74435 1.30763 1.15684 1.13375 1.17593 1.21237 0.90394 0.93814 0.99510 1.21721 1.00769 0.99695 0.93740 1.21941 0.96060 0.92229 0.97885 1.21637 0.94528 1.01015 0.99622 1.21115 0.99590 0.93354 0.92329 1.21021 0.92446 0.80081 1.04120 0.91230 0.91732 0.91518 0.90433 0.87338 0.89258 0.86711 0.82711 0.81885 0.82184 0.83446 0.85179 0.89493 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.06 13.67 21.62 0.30 -51.76 16 2 C 0.00 -0.02 5.49 84.88 0.47 0.45 16 3 Si 1.01 43.02 29.55 68.60 2.03 45.05 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.42 -25.26 9.65 67.94 0.66 -24.60 16 8 H 0.08 4.89 6.86 -2.91 -0.02 4.87 16 9 O -0.24 -13.66 9.63 14.79 0.14 -13.52 16 10 C 0.40 19.72 7.20 71.23 0.51 20.23 16 11 O -0.58 -31.47 15.16 20.78 0.31 -31.16 16 12 C -0.07 -2.62 2.78 -11.46 -0.03 -2.65 16 13 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 14 C -0.11 -3.11 5.10 30.62 0.16 -2.95 16 15 C -0.12 -2.32 6.10 30.82 0.19 -2.14 16 16 C 0.11 2.05 6.41 86.51 0.55 2.60 16 17 N -0.99 -24.57 3.28 -512.28 -1.68 -26.25 16 18 S 2.70 70.73 5.69 -56.49 -0.32 70.41 16 19 O -0.99 -32.75 16.00 -128.00 -2.05 -34.80 16 20 O -0.97 -26.42 15.99 -128.00 -2.05 -28.46 16 21 C -0.68 -15.75 5.97 22.27 0.13 -15.62 16 22 C -0.03 -0.55 9.52 22.27 0.21 -0.34 16 23 C -0.14 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.06 -0.94 10.05 22.27 0.22 -0.71 16 25 C -0.15 -2.83 10.05 22.27 0.22 -2.61 16 26 C -0.04 -1.05 9.52 22.27 0.21 -0.84 16 27 C 0.15 4.71 5.01 86.37 0.43 5.14 16 28 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.65 7.12 -2.39 -0.02 1.63 16 35 H 0.16 2.19 7.62 -2.91 -0.02 2.17 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.13 3.19 7.62 -2.91 -0.02 3.17 16 40 H 0.09 2.90 7.13 -2.39 -0.02 2.89 16 41 H 0.08 2.64 7.95 -2.39 -0.02 2.63 16 Total: -1.00 -80.05 358.76 1.89 -78.15 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.05 Total: 18.17 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.16 Total: -25.84 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.39 Total: -78.02 kcal Atomic # 8 Polarization: -104.30 SS G_CDS: -3.64 Total: -107.94 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 70.73 SS G_CDS: -0.32 Total: 70.41 kcal Total: -80.05 1.89 -78.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046271159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.285 kcal (2) G-P(sol) polarization free energy of solvation -80.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds