Wall clock time and date at job start Tue Mar 31 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34717 * 116.99706 * 2 1 4 4 O 1.21469 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99837 * 179.97438 * 3 2 1 6 6 C 1.39644 * 120.14888 * 359.97438 * 5 3 2 7 7 C 1.37926 * 119.84779 * 179.76875 * 6 5 3 8 8 C 1.38391 * 120.14684 * 0.49934 * 7 6 5 9 9 S 1.76201 * 119.84792 * 179.76442 * 8 7 6 10 10 O 1.42101 * 106.40089 * 1.19251 * 9 8 7 11 11 O 1.42101 * 106.40481 * 228.26863 * 9 8 7 12 12 N 1.65602 * 107.21548 * 114.72925 * 9 8 7 13 13 C 1.36935 * 120.00191 * 90.00247 * 12 9 8 14 14 H 1.08005 * 120.00153 * 232.34765 * 13 12 9 15 15 C 1.38809 * 120.00039 * 52.34413 * 13 12 9 16 16 N 1.31625 * 120.00141 * 21.82879 * 15 13 12 17 17 Si 1.86799 * 120.00058 * 201.83112 * 15 13 12 18 18 H 1.48502 * 109.47092 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47360 * 299.99685 * 17 15 13 20 20 H 1.48498 * 109.47241 * 59.99959 * 17 15 13 21 21 C 1.46505 * 120.00010 * 269.99879 * 12 9 8 22 22 C 1.52994 * 117.49722 * 183.42655 * 21 12 9 23 23 C 1.53003 * 117.49664 * 114.76708 * 21 12 9 24 24 C 1.38346 * 120.30341 * 359.49642 * 8 7 6 25 25 C 1.50705 * 119.92399 * 180.27347 * 24 8 7 26 26 C 1.37966 * 120.15039 * 0.24996 * 24 8 7 27 27 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46791 * 300.00197 * 1 2 3 29 29 H 1.08997 * 109.47114 * 60.00244 * 1 2 3 30 30 H 1.07999 * 120.07929 * 0.03552 * 6 5 3 31 31 H 1.08001 * 119.92580 * 180.24891 * 7 6 5 32 32 H 0.96996 * 120.00221 * 174.96076 * 16 15 13 33 33 H 1.08997 * 115.54918 * 329.10417 * 21 12 9 34 34 H 1.08995 * 117.50178 * 0.02562 * 22 21 12 35 35 H 1.09007 * 117.49403 * 145.02296 * 22 21 12 36 36 H 1.08999 * 117.50007 * 214.98135 * 23 21 12 37 37 H 1.08997 * 117.49884 * 359.97438 * 23 21 12 38 38 H 1.08994 * 109.47035 * 89.99972 * 25 24 8 39 39 H 1.08998 * 109.46677 * 209.99758 * 25 24 8 40 40 H 1.09000 * 109.46960 * 329.99718 * 25 24 8 41 41 H 1.07998 * 120.07615 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3024 0.1086 0.0017 7 6 5.6794 0.1880 -0.0026 8 6 6.3044 1.4228 0.0024 9 16 8.0639 1.5150 0.0031 10 8 8.5360 0.1751 -0.0305 11 8 8.4170 2.4381 1.0242 12 7 8.5190 2.2072 -1.4308 13 6 8.6507 3.5671 -1.5233 14 1 8.1411 4.1069 -2.3078 15 6 9.4392 4.2519 -0.6088 16 7 10.3790 3.6147 0.0570 17 14 9.1664 6.0776 -0.3229 18 1 10.1300 6.5687 0.6947 19 1 9.3718 6.8141 -1.5959 20 1 7.7801 6.3013 0.1602 21 6 8.7808 1.3647 -2.6004 22 6 9.2751 2.0561 -3.8726 23 6 7.8454 1.5137 -3.8019 24 6 5.5539 2.5850 0.0013 25 6 6.2434 3.9251 0.0006 26 6 4.1758 2.5200 0.0003 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8160 -0.8557 0.0015 31 1 6.2712 -0.7154 -0.0059 32 1 10.9776 4.1060 0.6411 33 1 9.1690 0.3692 -2.3852 34 1 9.4059 3.1376 -3.8393 35 1 9.9883 1.5152 -4.4947 36 1 7.6186 0.6163 -4.3775 37 1 7.0350 2.2382 -3.7220 38 1 6.4100 4.2474 -1.0272 39 1 5.6180 4.6556 0.5136 40 1 7.2008 3.8413 0.5149 41 1 3.5911 3.4280 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051155778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:00 Heat of formation + Delta-G solvation = -86.863992 kcal Electronic energy + Delta-G solvation = -28460.848986 eV Core-core repulsion = 24434.799521 eV Total energy + Delta-G solvation = -4026.049466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.56329 -38.66317 -37.24948 -36.48392 -35.93187 -34.28005 -33.44014 -32.55929 -31.10753 -30.71383 -28.02633 -26.51625 -24.95984 -24.20144 -21.68221 -21.64280 -20.74020 -20.60175 -18.93775 -17.63201 -17.53545 -16.97084 -16.44445 -16.19407 -16.05681 -15.29621 -15.01691 -14.34529 -14.28025 -14.03046 -13.88276 -13.63671 -13.35696 -13.03526 -12.98002 -12.58459 -12.37890 -12.18582 -11.85635 -11.82043 -11.52199 -11.42862 -11.08263 -10.95513 -10.90733 -10.76385 -10.68577 -10.65617 -10.51926 -10.44137 -10.23174 -10.00973 -9.50767 -9.40072 -8.99294 -8.76883 -8.42847 -7.61682 -6.64039 -4.29474 0.62797 1.62639 1.82856 2.50314 2.58238 3.13411 3.19366 3.21142 3.83220 4.00964 4.45962 4.64708 4.68516 4.80553 4.91060 4.98981 5.00636 5.14247 5.18476 5.30620 5.52010 5.60321 5.67728 5.72059 5.78644 5.84738 6.00407 6.10831 6.18688 6.23666 6.26788 6.36076 6.39348 6.46361 6.51579 6.66740 6.77449 6.93307 7.06804 7.23569 7.26480 7.43413 7.65514 8.07307 8.75423 9.19359 10.40889 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004375 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.036877 B = 6397.763752 C = 6993.912012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.507 6.507 5 C -0.100 4.100 6 C -0.100 4.100 7 C -0.049 4.049 8 C -0.632 4.632 9 S 2.561 3.439 10 O -1.010 7.010 11 O -0.940 6.940 12 N -0.785 5.785 13 C -0.279 4.279 14 H 0.084 0.916 15 C 0.063 3.937 16 N -0.774 5.774 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.271 1.271 20 H -0.258 1.258 21 C 0.098 3.902 22 C -0.160 4.160 23 C -0.214 4.214 24 C 0.014 3.986 25 C -0.168 4.168 26 C -0.086 4.086 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.283 0.717 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -3.360 -3.453 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.396 6.396 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.068 4.068 8 C -0.708 4.708 9 S 2.660 3.340 10 O -0.999 6.999 11 O -0.929 6.929 12 N -0.607 5.607 13 C -0.427 4.427 14 H 0.102 0.898 15 C -0.156 4.156 16 N -0.408 5.408 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.196 1.196 20 H -0.182 1.182 21 C -0.011 4.011 22 C -0.199 4.199 23 C -0.254 4.254 24 C 0.013 3.987 25 C -0.224 4.224 26 C -0.105 4.105 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.015 -3.629 -2.404 10.920 hybrid contribution -1.283 0.799 0.038 1.512 sum -11.299 -2.830 -2.366 11.886 Atomic orbital electron populations 1.23270 0.76199 1.03678 1.02590 1.86567 1.23394 1.32768 1.84368 1.21389 0.89304 0.81295 0.72398 1.90811 1.66858 1.36032 1.45934 1.19147 0.88218 0.95461 1.07349 1.21432 0.94199 0.97421 0.98875 1.20960 0.94100 0.97225 0.94490 1.32848 1.33602 0.97129 1.07178 1.10701 0.73376 0.72936 0.76946 1.93288 1.79683 1.39280 1.87696 1.93373 1.80259 1.61772 1.57450 1.52301 1.70713 1.12614 1.25024 1.18910 1.26953 0.80808 1.15999 0.89825 1.25762 0.93348 1.00580 0.95910 1.69794 1.11373 1.38350 1.21304 0.86262 0.79775 0.81708 0.78576 1.20485 1.19614 1.18241 1.21389 1.01957 0.95311 0.82459 1.23071 0.95590 1.01971 0.99294 1.23373 0.94498 1.02926 1.04588 1.19621 0.92229 0.95465 0.91386 1.22022 1.03708 0.91463 1.05228 1.21248 0.94494 0.96308 0.98447 0.87995 0.91880 0.91840 0.84690 0.84092 0.90646 0.86457 0.87296 0.89752 0.89755 0.89074 0.88444 0.92135 0.85760 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.66 9.82 -40.54 -0.40 -5.06 16 3 C 0.51 8.04 7.90 34.61 0.27 8.31 16 4 O -0.51 -8.82 16.14 -19.24 -0.31 -9.13 16 5 C -0.10 -1.69 5.87 -104.98 -0.62 -2.31 16 6 C -0.10 -1.62 9.62 -39.17 -0.38 -2.00 16 7 C -0.05 -0.90 9.53 -39.64 -0.38 -1.28 16 8 C -0.63 -13.10 5.91 -39.49 -0.23 -13.34 16 9 S 2.56 60.88 4.95 -107.50 -0.53 60.35 16 10 O -1.01 -25.58 15.78 -57.17 -0.90 -26.48 16 11 O -0.94 -24.66 11.89 -57.17 -0.68 -25.34 16 12 N -0.78 -17.54 3.00 -53.42 -0.16 -17.71 16 13 C -0.28 -6.21 4.54 -15.06 -0.07 -6.28 16 14 H 0.08 1.73 7.38 -52.48 -0.39 1.34 16 15 C 0.06 1.48 3.42 -17.43 -0.06 1.42 16 16 N -0.77 -19.83 11.68 55.49 0.65 -19.18 16 17 Si 0.91 18.26 28.37 -169.99 -4.82 13.44 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.26 -4.97 6.86 56.52 0.39 -4.58 16 21 C 0.10 1.93 6.32 -67.93 -0.43 1.50 16 22 C -0.16 -2.71 9.83 -26.70 -0.26 -2.98 16 23 C -0.21 -3.52 10.36 -26.69 -0.28 -3.80 16 24 C 0.01 0.27 5.87 -104.68 -0.61 -0.34 16 25 C -0.17 -3.27 7.26 36.01 0.26 -3.01 16 26 C -0.09 -1.53 9.24 -39.17 -0.36 -1.90 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.14 1.78 7.61 -52.49 -0.40 1.38 16 31 H 0.14 2.47 7.32 -52.49 -0.38 2.08 16 32 H 0.28 6.87 8.32 -40.82 -0.34 6.53 16 33 H 0.12 2.33 7.46 -51.93 -0.39 1.94 16 34 H 0.11 1.93 6.91 -51.93 -0.36 1.58 16 35 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.10 1.80 6.53 -51.93 -0.34 1.46 16 39 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.12 2.76 2.97 -51.93 -0.15 2.61 16 41 H 0.14 2.22 7.65 -52.49 -0.40 1.82 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -29.67 348.01 -8.91 -38.57 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.92 Total: 9.88 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -2.07 Total: -24.58 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.49 Total: -36.89 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -2.29 Total: -66.01 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.82 Total: 13.44 kcal Atomic # 16 Polarization: 60.88 SS G_CDS: -0.53 Total: 60.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.67 -8.91 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.289 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds