Wall clock time and date at job start Tue Mar 31 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00406 * 3 2 1 5 5 H 1.48498 * 109.46970 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.47130 * 150.00131 * 3 2 1 7 7 C 1.37881 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.34764 * 116.99903 * 180.02562 * 11 10 9 13 13 O 1.21521 * 120.00087 * 359.97438 * 12 11 10 14 14 C 1.47386 * 119.99991 * 180.02562 * 12 11 10 15 15 C 1.39860 * 120.07371 * 179.97438 * 14 12 11 16 16 C 1.37100 * 119.92553 * 180.02562 * 15 14 12 17 17 C 1.39244 * 120.07340 * 359.97438 * 16 15 14 18 18 N 1.39015 * 119.92251 * 180.02562 * 17 16 15 19 19 C 1.47060 * 126.30095 * 334.68394 * 18 17 16 20 20 C 1.54324 * 109.96547 * 150.90939 * 19 18 17 21 21 C 1.55606 * 104.19262 * 45.50588 * 20 19 18 22 22 S 1.67001 * 126.29874 * 155.00595 * 18 17 16 23 23 O 1.42106 * 105.13091 * 298.88533 * 22 18 17 24 24 O 1.42091 * 105.13769 * 68.43906 * 22 18 17 25 25 C 1.39237 * 120.14961 * 0.27428 * 17 16 15 26 26 C 1.37112 * 120.07268 * 359.44810 * 25 17 16 27 27 H 0.97000 * 120.00442 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47420 * 60.00173 * 9 7 2 29 29 H 1.09001 * 109.47283 * 299.99840 * 9 7 2 30 30 H 1.08994 * 109.47262 * 59.99595 * 10 9 7 31 31 H 1.09009 * 109.46877 * 299.99846 * 10 9 7 32 32 H 1.08008 * 120.03404 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.96810 * 179.97438 * 16 15 14 34 34 H 1.08996 * 109.35958 * 271.18855 * 19 18 17 35 35 H 1.09001 * 109.36069 * 30.83807 * 19 18 17 36 36 H 1.09001 * 110.64955 * 286.77469 * 20 19 18 37 37 H 1.09002 * 110.49707 * 164.16954 * 20 19 18 38 38 H 1.08989 * 111.16928 * 204.05710 * 21 20 19 39 39 H 1.09002 * 111.16148 * 79.78877 * 21 20 19 40 40 H 1.07997 * 119.96309 * 179.72146 * 25 17 16 41 41 H 1.07996 * 120.03641 * 180.27138 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2532 -6.0497 -0.0007 13 8 3.4668 -5.9861 -0.0003 14 6 1.5841 -7.3629 -0.0018 15 6 2.3443 -8.5369 -0.0019 16 6 1.7188 -9.7568 -0.0035 17 6 0.3281 -9.8279 -0.0045 18 7 -0.3029 -11.0666 -0.0056 19 6 0.2568 -12.3284 -0.5126 20 6 -0.3427 -13.5202 0.2631 21 6 -1.8670 -13.2120 0.3176 22 16 -1.8391 -11.3940 0.5618 23 8 -1.8033 -11.0605 1.9427 24 8 -2.7165 -10.7368 -0.3422 25 6 -0.4317 -8.6612 -0.0097 26 6 0.1875 -7.4379 -0.0023 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 3.4230 -8.4824 -0.0007 33 1 2.3051 -10.6638 -0.0040 34 1 0.0213 -12.4282 -1.5722 35 1 1.3391 -12.3213 -0.3834 36 1 0.0720 -13.5713 1.2698 37 1 -0.1613 -14.4531 -0.2707 38 1 -2.3404 -13.7152 1.1605 39 1 -2.3555 -13.4755 -0.6205 40 1 -1.5101 -8.7198 -0.0150 41 1 -0.4024 -6.5333 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053922521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:51 Heat of formation + Delta-G solvation = -122.820671 kcal Electronic energy + Delta-G solvation = -26108.311377 eV Core-core repulsion = 22080.702713 eV Total energy + Delta-G solvation = -4027.608664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35374 -39.33338 -37.66817 -37.51915 -36.45048 -35.97119 -33.94834 -33.29687 -31.38869 -30.49034 -29.65150 -27.12485 -25.28066 -23.98737 -23.58573 -22.00052 -21.25013 -20.57093 -19.65596 -18.53054 -17.74112 -17.62197 -16.63387 -16.41881 -16.12835 -15.88112 -15.83152 -15.28660 -15.00728 -14.62239 -14.51067 -14.46101 -14.25267 -13.72648 -13.54021 -13.28693 -13.03312 -12.78507 -12.62395 -12.49611 -12.33932 -12.30022 -12.26061 -11.99826 -11.34400 -11.24920 -11.15270 -10.99539 -10.74151 -10.66582 -10.64208 -10.23373 -9.59919 -9.59025 -9.29107 -9.26532 -8.42215 -8.39238 -6.06925 -4.11117 -0.51697 0.66422 1.19679 1.73747 2.70677 2.97277 3.11437 3.21367 3.31252 3.37401 3.42224 3.55741 3.70074 3.77606 4.09997 4.17854 4.42196 4.54558 4.65717 4.66635 4.71273 4.84497 4.92049 5.04843 5.05772 5.13549 5.19997 5.29584 5.44192 5.79128 5.88243 6.08496 6.14430 6.16757 6.22277 6.29416 6.67495 6.69426 7.01003 7.59985 7.66831 7.90455 8.22560 8.30413 8.94435 9.53011 11.04593 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.002025 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.361435 B =13826.048961 C =14681.119722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.353 6.353 12 C 0.504 3.496 13 O -0.519 6.519 14 C -0.148 4.148 15 C -0.022 4.022 16 C -0.169 4.169 17 C 0.238 3.762 18 N -0.932 5.932 19 C 0.067 3.933 20 C -0.125 4.125 21 C -0.596 4.596 22 S 2.560 3.440 23 O -0.938 6.938 24 O -0.940 6.940 25 C -0.187 4.187 26 C -0.016 4.016 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -34.430 -0.926 34.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.269 6.269 12 C 0.349 3.651 13 O -0.410 6.410 14 C -0.150 4.150 15 C -0.041 4.041 16 C -0.191 4.191 17 C 0.142 3.858 18 N -0.758 5.758 19 C -0.058 4.058 20 C -0.164 4.164 21 C -0.727 4.727 22 S 2.658 3.342 23 O -0.927 6.927 24 O -0.929 6.929 25 C -0.208 4.208 26 C -0.035 4.035 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.008 -33.580 -0.557 33.719 hybrid contribution 0.826 0.292 -0.244 0.909 sum -2.182 -33.288 -0.801 33.369 Atomic orbital electron populations 1.69972 1.06077 1.26965 1.49798 1.24988 0.94920 0.99381 0.94920 0.86469 0.79757 0.82848 0.78205 1.20507 1.21083 1.19734 1.20978 0.93180 0.90113 1.52122 0.92246 1.19176 0.94211 0.88996 0.98930 1.23661 0.96396 0.78555 1.01020 1.86577 1.41956 1.15633 1.82703 1.20960 0.85622 0.85466 0.73055 1.90794 1.15040 1.88411 1.46735 1.19257 0.93784 0.91098 1.10850 1.20980 1.00747 0.90042 0.92316 1.20576 0.92020 0.98358 1.08137 1.17312 0.91923 0.82094 0.94462 1.54971 1.35508 1.11273 1.74058 1.22390 1.03165 0.80870 0.99366 1.22719 0.90121 0.99831 1.03761 1.30879 1.04671 1.24145 1.13013 1.06999 0.73370 0.78691 0.75176 1.93676 1.84771 1.81683 1.32572 1.93666 1.63149 1.71211 1.64881 1.20880 1.00553 0.91170 1.08195 1.21257 0.93442 0.97999 0.90773 0.92722 0.95298 0.95289 0.92215 0.92239 0.83941 0.84800 0.89205 0.87770 0.88249 0.86415 0.83549 0.83525 0.84713 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.64 5.35 -27.89 -0.15 0.49 16 10 C 0.08 1.74 5.41 37.16 0.20 1.94 16 11 O -0.35 -7.33 9.46 -40.67 -0.38 -7.71 16 12 C 0.50 9.44 7.89 34.45 0.27 9.71 16 13 O -0.52 -10.66 16.13 -19.28 -0.31 -10.97 16 14 C -0.15 -2.22 5.88 -104.96 -0.62 -2.83 16 15 C -0.02 -0.27 9.56 -39.39 -0.38 -0.64 16 16 C -0.17 -1.64 9.49 -39.62 -0.38 -2.02 16 17 C 0.24 2.58 6.48 -83.86 -0.54 2.03 16 18 N -0.93 -7.30 3.45 -57.55 -0.20 -7.50 16 19 C 0.07 0.21 6.55 -3.04 -0.02 0.19 16 20 C -0.13 -0.14 6.81 -24.65 -0.17 -0.30 16 21 C -0.60 -1.30 7.51 38.54 0.29 -1.01 16 22 S 2.56 20.53 5.44 -107.50 -0.58 19.95 16 23 O -0.94 -11.06 18.14 -57.43 -1.04 -12.11 16 24 O -0.94 -10.69 16.91 -57.43 -0.97 -11.66 16 25 C -0.19 -2.39 9.43 -39.62 -0.37 -2.76 16 26 C -0.02 -0.22 9.58 -39.38 -0.38 -0.60 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.14 1.61 7.64 -52.48 -0.40 1.21 16 33 H 0.13 0.84 6.67 -52.49 -0.35 0.49 16 34 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.10 0.19 6.61 -51.93 -0.34 -0.15 16 36 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.12 -0.15 8.14 -51.93 -0.42 -0.58 16 38 H 0.15 0.09 8.14 -51.94 -0.42 -0.34 16 39 H 0.15 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.14 1.69 6.47 -52.49 -0.34 1.35 16 41 H 0.15 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -38.19 362.49 -10.14 -48.33 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -5.18 Total: -5.01 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.65 Total: -9.49 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.54 Total: -33.46 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.71 Total: -42.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 20.53 SS G_CDS: -0.58 Total: 19.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.19 -10.14 -48.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.494 kcal (2) G-P(sol) polarization free energy of solvation -38.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds