Wall clock time and date at job start Tue Mar 31 2020 22:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00406 * 3 2 1 5 5 H 1.48498 * 109.46970 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.47130 * 150.00131 * 3 2 1 7 7 C 1.37881 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.34764 * 116.99903 * 180.02562 * 11 10 9 13 13 O 1.21521 * 120.00087 * 359.97438 * 12 11 10 14 14 C 1.47386 * 119.99991 * 180.02562 * 12 11 10 15 15 C 1.39860 * 120.07371 * 179.97438 * 14 12 11 16 16 C 1.37100 * 119.92553 * 180.02562 * 15 14 12 17 17 C 1.39244 * 120.07340 * 359.97438 * 16 15 14 18 18 N 1.39015 * 119.92251 * 180.02562 * 17 16 15 19 19 C 1.47060 * 126.30095 * 334.68394 * 18 17 16 20 20 C 1.54324 * 109.96547 * 150.90939 * 19 18 17 21 21 C 1.55606 * 104.19262 * 45.50588 * 20 19 18 22 22 S 1.67001 * 126.29874 * 155.00595 * 18 17 16 23 23 O 1.42106 * 105.13091 * 298.88533 * 22 18 17 24 24 O 1.42091 * 105.13769 * 68.43906 * 22 18 17 25 25 C 1.39237 * 120.14961 * 0.27428 * 17 16 15 26 26 C 1.37112 * 120.07268 * 359.44810 * 25 17 16 27 27 H 0.97000 * 120.00442 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47420 * 60.00173 * 9 7 2 29 29 H 1.09001 * 109.47283 * 299.99840 * 9 7 2 30 30 H 1.08994 * 109.47262 * 59.99595 * 10 9 7 31 31 H 1.09009 * 109.46877 * 299.99846 * 10 9 7 32 32 H 1.08008 * 120.03404 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.96810 * 179.97438 * 16 15 14 34 34 H 1.08996 * 109.35958 * 271.18855 * 19 18 17 35 35 H 1.09001 * 109.36069 * 30.83807 * 19 18 17 36 36 H 1.09001 * 110.64955 * 286.77469 * 20 19 18 37 37 H 1.09002 * 110.49707 * 164.16954 * 20 19 18 38 38 H 1.08989 * 111.16928 * 204.05710 * 21 20 19 39 39 H 1.09002 * 111.16148 * 79.78877 * 21 20 19 40 40 H 1.07997 * 119.96309 * 179.72146 * 25 17 16 41 41 H 1.07996 * 120.03641 * 180.27138 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2532 -6.0497 -0.0007 13 8 3.4668 -5.9861 -0.0003 14 6 1.5841 -7.3629 -0.0018 15 6 2.3443 -8.5369 -0.0019 16 6 1.7188 -9.7568 -0.0035 17 6 0.3281 -9.8279 -0.0045 18 7 -0.3029 -11.0666 -0.0056 19 6 0.2568 -12.3284 -0.5126 20 6 -0.3427 -13.5202 0.2631 21 6 -1.8670 -13.2120 0.3176 22 16 -1.8391 -11.3940 0.5618 23 8 -1.8033 -11.0605 1.9427 24 8 -2.7165 -10.7368 -0.3422 25 6 -0.4317 -8.6612 -0.0097 26 6 0.1875 -7.4379 -0.0023 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 3.4230 -8.4824 -0.0007 33 1 2.3051 -10.6638 -0.0040 34 1 0.0213 -12.4282 -1.5722 35 1 1.3391 -12.3213 -0.3834 36 1 0.0720 -13.5713 1.2698 37 1 -0.1613 -14.4531 -0.2707 38 1 -2.3404 -13.7152 1.1605 39 1 -2.3555 -13.4755 -0.6205 40 1 -1.5101 -8.7198 -0.0150 41 1 -0.4024 -6.5333 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053922521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:50 Heat of formation + Delta-G solvation = -149.826937 kcal Electronic energy + Delta-G solvation = -26109.482457 eV Core-core repulsion = 22080.702713 eV Total energy + Delta-G solvation = -4028.779744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64175 -40.44413 -38.33368 -38.18060 -37.59094 -37.12007 -35.46406 -34.51736 -32.53209 -32.19655 -30.71218 -27.58288 -27.09313 -25.14336 -24.33907 -23.04855 -22.58078 -22.04420 -20.39180 -19.35749 -19.03689 -18.35008 -18.21143 -17.69366 -17.52033 -17.03913 -16.70302 -16.53732 -15.88670 -15.77782 -15.35941 -15.20683 -14.96235 -14.92250 -14.68362 -14.39265 -14.24855 -13.93621 -13.60054 -13.38973 -13.28740 -13.22327 -13.15264 -13.03122 -12.62796 -12.61472 -12.53088 -12.50164 -12.03361 -11.92025 -11.61412 -11.55218 -11.49596 -11.38429 -11.31233 -10.62381 -10.26401 -9.27137 -8.27701 -6.41350 -1.03675 -0.41448 0.23159 1.19428 1.39998 1.41603 1.42800 1.53670 1.72361 2.39741 2.48817 2.58072 2.82712 3.06450 3.19337 3.47420 3.59527 3.69095 3.71792 3.96478 4.01407 4.12252 4.21230 4.22851 4.24393 4.39892 4.43177 4.61605 4.66509 4.76085 4.85819 4.91949 4.96457 5.03254 5.14639 5.23272 5.27977 5.36896 5.44556 5.50757 5.72472 5.80503 6.05075 6.67744 6.73139 7.28321 8.85099 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.002025 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.361435 B =13826.048961 C =14681.119722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.363 6.363 12 C 0.504 3.496 13 O -0.540 6.540 14 C -0.177 4.177 15 C -0.014 4.014 16 C -0.154 4.154 17 C 0.251 3.749 18 N -0.933 5.933 19 C 0.049 3.951 20 C -0.120 4.120 21 C -0.544 4.544 22 S 2.525 3.475 23 O -0.992 6.992 24 O -0.991 6.991 25 C -0.208 4.208 26 C -0.023 4.023 27 H 0.268 0.732 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.127 0.873 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -38.409 -1.468 38.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.280 6.280 12 C 0.351 3.649 13 O -0.433 6.433 14 C -0.179 4.179 15 C -0.033 4.033 16 C -0.175 4.175 17 C 0.153 3.847 18 N -0.758 5.758 19 C -0.073 4.073 20 C -0.159 4.159 21 C -0.681 4.681 22 S 2.629 3.371 23 O -0.981 6.981 24 O -0.981 6.981 25 C -0.230 4.230 26 C -0.042 4.042 27 H 0.077 0.923 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.177 0.823 38 H 0.191 0.809 39 H 0.194 0.806 40 H 0.145 0.855 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.360 -37.553 -1.097 37.594 hybrid contribution 0.214 1.205 -0.099 1.228 sum -1.146 -36.349 -1.196 36.386 Atomic orbital electron populations 1.70105 1.07896 1.28308 1.50372 1.26017 0.95879 1.03572 0.94054 0.85277 0.78496 0.77522 0.78714 1.19435 1.20393 1.18632 1.21370 0.93752 0.91109 1.52518 0.91520 1.18990 0.94368 0.90705 0.96629 1.23202 0.95093 0.78737 1.01174 1.86569 1.42277 1.15786 1.83354 1.21595 0.85541 0.85751 0.72002 1.90761 1.15770 1.88588 1.48176 1.19140 0.94047 0.89988 1.14733 1.21185 1.01184 0.89734 0.91229 1.20961 0.91553 0.99038 1.05992 1.17446 0.92511 0.82807 0.91954 1.54986 1.35620 1.11764 1.73412 1.22933 1.04576 0.79143 1.00692 1.22946 0.88094 1.00216 1.04657 1.30682 1.06878 1.14895 1.15619 1.07839 0.73036 0.82486 0.73767 1.93608 1.85179 1.84524 1.34828 1.93599 1.64362 1.74911 1.65226 1.20912 1.00530 0.91915 1.09613 1.21139 0.93303 0.98267 0.91516 0.92329 0.97558 0.97650 0.92041 0.91927 0.82789 0.80112 0.87323 0.85670 0.87569 0.82258 0.80926 0.80631 0.85544 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.71 5.35 29.85 0.16 1.87 16 10 C 0.09 4.36 5.41 71.98 0.39 4.75 16 11 O -0.36 -16.10 9.46 -56.75 -0.54 -16.64 16 12 C 0.50 19.78 7.89 70.23 0.55 20.33 16 13 O -0.54 -22.77 16.13 19.77 0.32 -22.45 16 14 C -0.18 -5.53 5.88 -20.08 -0.12 -5.65 16 15 C -0.01 -0.33 9.56 22.39 0.21 -0.12 16 16 C -0.15 -2.60 9.49 22.24 0.21 -2.39 16 17 C 0.25 5.21 6.48 38.49 0.25 5.46 16 18 N -0.93 -12.75 3.45 -335.99 -1.16 -13.91 16 19 C 0.05 0.07 6.55 86.72 0.57 0.64 16 20 C -0.12 0.47 6.81 31.94 0.22 0.69 16 21 C -0.54 0.24 7.51 72.88 0.55 0.79 16 22 S 2.52 38.92 5.44 -56.49 -0.31 38.61 16 23 O -0.99 -24.28 18.14 -127.76 -2.32 -26.59 16 24 O -0.99 -23.72 16.91 -127.76 -2.16 -25.88 16 25 C -0.21 -5.69 9.43 22.25 0.21 -5.48 16 26 C -0.02 -0.71 9.58 22.40 0.21 -0.50 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.15 3.22 7.64 -2.91 -0.02 3.20 16 33 H 0.18 1.32 6.67 -2.91 -0.02 1.30 16 34 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.13 -0.28 6.61 -2.39 -0.02 -0.29 16 36 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.16 -1.69 8.14 -2.39 -0.02 -1.71 16 38 H 0.17 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.18 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.13 3.59 6.47 -2.91 -0.02 3.58 16 41 H 0.14 4.37 7.60 -2.91 -0.02 4.35 16 Total: -1.00 -90.02 362.49 1.32 -88.70 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: 1.05 Total: -0.81 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.11 Total: -10.91 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -0.87 Total: -70.83 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -4.69 Total: -91.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 38.92 SS G_CDS: -0.31 Total: 38.61 kcal Total: -90.02 1.32 -88.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.128 kcal (2) G-P(sol) polarization free energy of solvation -90.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds