Wall clock time and date at job start Tue Mar 31 2020 23:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09006 * 109.46869 * 181.28571 * 3 2 1 5 5 C 1.50698 * 109.47353 * 301.28623 * 3 2 1 6 6 H 1.08010 * 119.99672 * 114.81136 * 5 3 2 7 7 C 1.37869 * 120.00200 * 294.81318 * 5 3 2 8 8 N 1.31519 * 120.00232 * 354.27589 * 7 5 3 9 9 Si 1.86805 * 120.00201 * 174.27096 * 7 5 3 10 10 H 1.48500 * 109.47383 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47320 * 300.00438 * 9 7 5 12 12 H 1.48503 * 109.46596 * 60.00119 * 9 7 5 13 13 N 1.46501 * 109.46964 * 61.29214 * 3 2 1 14 14 S 1.65596 * 120.00270 * 95.14514 * 13 3 2 15 15 O 1.42100 * 106.40381 * 178.58269 * 14 13 3 16 16 O 1.42100 * 106.40233 * 311.50478 * 14 13 3 17 17 C 1.76198 * 107.21810 * 65.04550 * 14 13 3 18 18 C 1.38407 * 119.82399 * 269.72167 * 17 14 13 19 19 C 1.37893 * 120.17064 * 179.76162 * 18 17 14 20 20 C 1.39857 * 119.82439 * 0.51574 * 19 18 17 21 21 C 1.47172 * 120.17260 * 179.71814 * 20 19 18 22 22 C 1.34922 * 119.99871 * 0.02611 * 21 20 19 23 23 C 1.46224 * 119.99799 * 180.02562 * 22 21 20 24 24 O 1.21621 * 120.00358 * 359.97438 * 23 22 21 25 25 O 1.34915 * 119.99973 * 179.97438 * 23 22 21 26 26 C 1.39853 * 119.65619 * 359.74209 * 20 19 18 27 27 C 1.37894 * 119.82633 * 0.02562 * 26 20 19 28 28 H 1.08995 * 109.47040 * 305.11872 * 1 2 3 29 29 H 1.09000 * 109.46592 * 65.11637 * 1 2 3 30 30 H 1.08997 * 109.47581 * 185.11129 * 1 2 3 31 31 H 1.09007 * 109.47030 * 240.00012 * 2 1 3 32 32 H 1.09000 * 109.46692 * 120.00570 * 2 1 3 33 33 H 0.96997 * 119.99477 * 355.51423 * 8 7 5 34 34 H 0.97010 * 119.99633 * 275.13985 * 13 3 2 35 35 H 1.07999 * 119.91698 * 0.02562 * 18 17 14 36 36 H 1.07996 * 120.08480 * 180.27758 * 19 18 17 37 37 H 1.07993 * 119.99963 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.99741 * 359.97438 * 22 21 20 39 39 H 0.96700 * 113.99965 * 179.97438 * 25 23 22 40 40 H 1.07997 * 120.08635 * 180.02562 * 26 20 19 41 41 H 1.07998 * 119.91195 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4424 -0.0231 5 6 1.5119 2.1620 -1.2142 6 1 0.8260 2.9880 -1.0965 7 6 1.9042 1.7660 -2.4752 8 7 2.8238 0.8364 -2.6162 9 14 1.1295 2.5497 -3.9836 10 1 1.7190 1.9535 -5.2092 11 1 -0.3353 2.3065 -3.9706 12 1 1.3887 4.0119 -3.9698 13 7 1.5773 2.1240 1.2115 14 16 2.5567 2.1990 2.5447 15 8 1.8448 2.9426 3.5242 16 8 3.0346 0.8793 2.7663 17 6 3.9605 3.1696 2.1066 18 6 5.0828 2.5569 1.5767 19 6 6.1835 3.3101 1.2269 20 6 6.1679 4.6954 1.4188 21 6 7.3409 5.5059 1.0539 22 6 8.4348 4.9130 0.5322 23 6 9.6004 5.7182 0.1701 24 8 9.5837 6.9226 0.3388 25 8 10.6944 5.1252 -0.3510 26 6 5.0321 5.3063 1.9598 27 6 3.9375 4.5399 2.3001 28 1 -0.3633 0.5912 0.8406 29 1 -0.3632 0.4324 -0.9323 30 1 -0.3634 -1.0235 0.0915 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2725 0.4758 -1.8355 34 1 0.6972 2.5314 1.2326 35 1 5.0948 1.4866 1.4329 36 1 7.0568 2.8311 0.8094 37 1 7.3260 6.5753 1.2036 38 1 8.4498 3.8434 0.3828 39 1 11.4127 5.7384 -0.5589 40 1 5.0124 6.3755 2.1105 41 1 3.0599 5.0102 2.7183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054176890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:12 Heat of formation + Delta-G solvation = -134.831675 kcal Electronic energy + Delta-G solvation = -26932.865746 eV Core-core repulsion = 22904.736246 eV Total energy + Delta-G solvation = -4028.129500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45174 -39.34142 -36.97943 -36.46269 -36.30022 -35.48483 -34.53182 -32.33509 -31.25949 -30.52059 -30.23392 -25.95812 -25.54223 -23.82898 -23.11877 -22.39001 -20.23088 -19.78714 -19.11443 -18.57121 -17.72232 -17.62297 -17.13557 -16.79133 -15.84161 -15.58272 -15.53499 -14.89005 -14.58982 -14.04217 -13.83961 -13.76749 -13.59734 -13.43586 -13.29191 -13.14204 -12.79786 -12.71062 -12.24422 -11.92687 -11.76648 -11.68600 -11.47551 -11.22659 -11.22152 -10.96163 -10.92460 -10.89374 -10.72785 -10.53200 -10.32480 -10.20041 -9.96833 -9.14977 -9.07144 -8.80656 -8.50378 -8.33939 -6.50732 -4.25424 -0.09419 0.84416 1.26452 1.38075 2.64081 2.84564 3.34983 3.35824 3.40132 3.54616 3.64810 4.13626 4.39411 4.40631 4.43924 4.69362 4.74040 4.90767 5.01596 5.19649 5.20385 5.30018 5.54742 5.66194 5.79990 5.86671 5.97450 6.04992 6.06427 6.08589 6.15526 6.27777 6.29884 6.39536 6.70523 6.77683 6.95647 7.14873 7.26094 7.34035 7.53110 7.60622 8.01773 8.28588 8.65753 9.42805 10.85026 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.003736 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.141625 B = 7493.576988 C = 9309.314830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 C 0.268 3.732 4 H 0.032 0.968 5 C -0.600 4.600 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.904 5.904 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.091 6.091 14 S 2.687 3.313 15 O -0.978 6.978 16 O -0.961 6.961 17 C -0.651 4.651 18 C -0.016 4.016 19 C -0.116 4.116 20 C -0.039 4.039 21 C -0.001 4.001 22 C -0.196 4.196 23 C 0.513 3.487 24 O -0.521 6.521 25 O -0.503 6.503 26 C -0.114 4.114 27 C -0.022 4.022 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.271 0.729 34 H 0.412 0.588 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.410 0.590 40 H 0.136 0.864 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 6.793 6.633 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.049 0.951 5 C -0.639 4.639 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.539 5.539 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.852 5.852 14 S 2.775 3.225 15 O -0.968 6.968 16 O -0.951 6.951 17 C -0.736 4.736 18 C -0.035 4.035 19 C -0.135 4.135 20 C -0.039 4.039 21 C -0.020 4.020 22 C -0.214 4.214 23 C 0.359 3.641 24 O -0.413 6.413 25 O -0.313 6.313 26 C -0.132 4.132 27 C -0.041 4.041 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.267 0.733 40 H 0.154 0.846 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.164 6.295 5.905 11.881 hybrid contribution 0.634 1.098 0.920 1.567 sum 8.798 7.394 6.825 13.366 Atomic orbital electron populations 1.21505 0.96681 0.98575 1.01710 1.22042 0.96379 0.98876 1.00684 1.18641 0.93982 0.89052 0.81999 0.95057 1.21991 1.31499 1.19038 0.91372 0.92368 1.25695 0.95717 0.95565 1.00734 1.70817 1.22817 1.25962 1.34321 0.83605 0.75867 0.75553 0.75767 1.20730 1.21280 1.21513 1.55377 1.28395 1.70653 1.30810 1.02003 0.73442 0.73950 0.73102 1.93533 1.71725 1.73507 1.58049 1.93571 1.81658 1.35389 1.84471 1.31354 1.19376 1.08431 1.14477 1.20935 0.90952 1.00721 0.90871 1.21526 0.99232 0.92899 0.99817 1.19150 0.93479 0.93421 0.97852 1.22562 0.90109 1.00179 0.89144 1.22245 0.91912 1.01221 1.06068 1.20937 0.83289 0.86178 0.73700 1.90944 1.82685 1.16022 1.51609 1.85070 1.26619 1.44013 1.75565 1.21416 0.92637 1.00220 0.98965 1.20841 0.98353 0.91619 0.93299 0.94320 0.91807 0.95297 0.90859 0.94038 0.91707 0.75324 0.83715 0.84486 0.84025 0.83647 0.73343 0.84571 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.47 37.16 0.35 -2.17 16 2 C -0.14 -3.04 5.59 -26.73 -0.15 -3.19 16 3 C 0.27 5.89 2.09 -69.09 -0.14 5.75 16 4 H 0.03 0.72 6.63 -51.93 -0.34 0.38 16 5 C -0.60 -14.58 7.46 -34.44 -0.26 -14.84 16 6 H 0.06 1.40 7.82 -52.48 -0.41 0.99 16 7 C 0.03 0.73 5.26 -17.82 -0.09 0.64 16 8 N -0.90 -24.39 12.89 55.43 0.71 -23.67 16 9 Si 1.06 23.11 29.91 -169.99 -5.08 18.03 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 13 N -1.09 -20.43 4.80 -5.88 -0.03 -20.46 16 14 S 2.69 47.33 5.65 -107.50 -0.61 46.72 16 15 O -0.98 -18.11 17.26 -57.17 -0.99 -19.09 16 16 O -0.96 -19.00 16.52 -57.17 -0.94 -19.94 16 17 C -0.65 -10.43 5.83 -39.46 -0.23 -10.66 16 18 C -0.02 -0.24 8.89 -39.65 -0.35 -0.59 16 19 C -0.12 -1.52 9.41 -39.10 -0.37 -1.89 16 20 C -0.04 -0.47 5.87 -105.06 -0.62 -1.09 16 21 C 0.00 -0.02 9.46 -37.13 -0.35 -0.37 16 22 C -0.20 -1.97 9.53 -37.55 -0.36 -2.33 16 23 C 0.51 5.41 8.23 33.94 0.28 5.68 16 24 O -0.52 -6.83 16.96 -19.36 -0.33 -7.16 16 25 O -0.50 -4.11 13.56 -41.08 -0.56 -4.67 16 26 C -0.11 -1.38 9.80 -39.10 -0.38 -1.77 16 27 C -0.02 -0.31 9.50 -39.65 -0.38 -0.69 16 28 H 0.04 0.70 7.25 -51.93 -0.38 0.32 16 29 H 0.06 1.34 7.37 -51.93 -0.38 0.96 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.73 6.27 -51.93 -0.33 1.40 16 32 H 0.04 0.87 7.64 -51.93 -0.40 0.48 16 33 H 0.27 7.23 6.03 -40.82 -0.25 6.98 16 34 H 0.41 7.09 8.48 -34.47 -0.29 6.80 16 35 H 0.15 2.17 7.59 -52.49 -0.40 1.77 16 36 H 0.14 1.42 6.17 -52.49 -0.32 1.10 16 37 H 0.14 1.35 7.52 -52.49 -0.39 0.95 16 38 H 0.15 1.27 6.08 -52.48 -0.32 0.96 16 39 H 0.41 1.56 8.98 45.56 0.41 1.96 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.14 1.78 7.60 -52.49 -0.40 1.38 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -32.83 362.89 -9.24 -42.07 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -3.84 Total: 10.22 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.05 Total: -27.51 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.69 Total: -44.14 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -2.82 Total: -50.86 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.08 Total: 18.03 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.61 Total: 46.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.83 -9.24 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054176890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.762 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds