Wall clock time and date at job start Tue Mar 31 2020 23:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09006 * 109.46869 * 181.28571 * 3 2 1 5 5 C 1.50698 * 109.47353 * 301.28623 * 3 2 1 6 6 H 1.08010 * 119.99672 * 114.81136 * 5 3 2 7 7 C 1.37869 * 120.00200 * 294.81318 * 5 3 2 8 8 N 1.31519 * 120.00232 * 354.27589 * 7 5 3 9 9 Si 1.86805 * 120.00201 * 174.27096 * 7 5 3 10 10 H 1.48500 * 109.47383 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47320 * 300.00438 * 9 7 5 12 12 H 1.48503 * 109.46596 * 60.00119 * 9 7 5 13 13 N 1.46501 * 109.46964 * 61.29214 * 3 2 1 14 14 S 1.65596 * 120.00270 * 95.14514 * 13 3 2 15 15 O 1.42100 * 106.40381 * 178.58269 * 14 13 3 16 16 O 1.42100 * 106.40233 * 311.50478 * 14 13 3 17 17 C 1.76198 * 107.21810 * 65.04550 * 14 13 3 18 18 C 1.38407 * 119.82399 * 269.72167 * 17 14 13 19 19 C 1.37893 * 120.17064 * 179.76162 * 18 17 14 20 20 C 1.39857 * 119.82439 * 0.51574 * 19 18 17 21 21 C 1.47172 * 120.17260 * 179.71814 * 20 19 18 22 22 C 1.34922 * 119.99871 * 0.02611 * 21 20 19 23 23 C 1.46224 * 119.99799 * 180.02562 * 22 21 20 24 24 O 1.21621 * 120.00358 * 359.97438 * 23 22 21 25 25 O 1.34915 * 119.99973 * 179.97438 * 23 22 21 26 26 C 1.39853 * 119.65619 * 359.74209 * 20 19 18 27 27 C 1.37894 * 119.82633 * 0.02562 * 26 20 19 28 28 H 1.08995 * 109.47040 * 305.11872 * 1 2 3 29 29 H 1.09000 * 109.46592 * 65.11637 * 1 2 3 30 30 H 1.08997 * 109.47581 * 185.11129 * 1 2 3 31 31 H 1.09007 * 109.47030 * 240.00012 * 2 1 3 32 32 H 1.09000 * 109.46692 * 120.00570 * 2 1 3 33 33 H 0.96997 * 119.99477 * 355.51423 * 8 7 5 34 34 H 0.97010 * 119.99633 * 275.13985 * 13 3 2 35 35 H 1.07999 * 119.91698 * 0.02562 * 18 17 14 36 36 H 1.07996 * 120.08480 * 180.27758 * 19 18 17 37 37 H 1.07993 * 119.99963 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.99741 * 359.97438 * 22 21 20 39 39 H 0.96700 * 113.99965 * 179.97438 * 25 23 22 40 40 H 1.07997 * 120.08635 * 180.02562 * 26 20 19 41 41 H 1.07998 * 119.91195 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4424 -0.0231 5 6 1.5119 2.1620 -1.2142 6 1 0.8260 2.9880 -1.0965 7 6 1.9042 1.7660 -2.4752 8 7 2.8238 0.8364 -2.6162 9 14 1.1295 2.5497 -3.9836 10 1 1.7190 1.9535 -5.2092 11 1 -0.3353 2.3065 -3.9706 12 1 1.3887 4.0119 -3.9698 13 7 1.5773 2.1240 1.2115 14 16 2.5567 2.1990 2.5447 15 8 1.8448 2.9426 3.5242 16 8 3.0346 0.8793 2.7663 17 6 3.9605 3.1696 2.1066 18 6 5.0828 2.5569 1.5767 19 6 6.1835 3.3101 1.2269 20 6 6.1679 4.6954 1.4188 21 6 7.3409 5.5059 1.0539 22 6 8.4348 4.9130 0.5322 23 6 9.6004 5.7182 0.1701 24 8 9.5837 6.9226 0.3388 25 8 10.6944 5.1252 -0.3510 26 6 5.0321 5.3063 1.9598 27 6 3.9375 4.5399 2.3001 28 1 -0.3633 0.5912 0.8406 29 1 -0.3632 0.4324 -0.9323 30 1 -0.3634 -1.0235 0.0915 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2725 0.4758 -1.8355 34 1 0.6972 2.5314 1.2326 35 1 5.0948 1.4866 1.4329 36 1 7.0568 2.8311 0.8094 37 1 7.3260 6.5753 1.2036 38 1 8.4498 3.8434 0.3828 39 1 11.4127 5.7384 -0.5589 40 1 5.0124 6.3755 2.1105 41 1 3.0599 5.0102 2.7183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054176890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:11 Heat of formation + Delta-G solvation = -157.510074 kcal Electronic energy + Delta-G solvation = -26933.849155 eV Core-core repulsion = 22904.736246 eV Total energy + Delta-G solvation = -4029.112910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26380 -40.34877 -38.52174 -37.96198 -37.22136 -36.97206 -35.45987 -34.15322 -32.29787 -32.16932 -31.22395 -27.76286 -26.46725 -25.62776 -24.13684 -23.36532 -21.95885 -20.76129 -20.33722 -19.42757 -19.38412 -18.90525 -18.36225 -17.99963 -16.88797 -16.63990 -16.56016 -16.15055 -15.79555 -15.56334 -15.41732 -15.14587 -14.84041 -14.70126 -14.56074 -14.48020 -14.26490 -13.83469 -13.27343 -13.23989 -13.19704 -13.12836 -12.86556 -12.68196 -12.61151 -12.29384 -12.21579 -12.06960 -11.93916 -11.91856 -11.81832 -11.79571 -11.69820 -10.82550 -10.42048 -10.16257 -10.06291 -9.77555 -8.50163 -6.24275 -1.06542 -0.53483 0.22097 0.41833 1.60806 1.65362 1.78340 1.83873 2.09042 2.13276 2.48873 2.63006 2.78487 3.26422 3.28198 3.52046 3.62815 3.78356 4.03573 4.14235 4.23408 4.28015 4.30288 4.46896 4.53778 4.62734 4.72682 4.74096 4.88466 4.90992 4.99261 5.09867 5.13810 5.27711 5.34000 5.39312 5.44723 5.56143 5.61160 5.68336 5.93433 6.24796 6.42181 6.67236 6.85073 7.50395 8.86281 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.003736 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.141625 B = 7493.576988 C = 9309.314830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 C 0.272 3.728 4 H 0.020 0.980 5 C -0.598 4.598 6 H 0.059 0.941 7 C -0.015 4.015 8 N -0.931 5.931 9 Si 1.103 2.897 10 H -0.291 1.291 11 H -0.273 1.273 12 H -0.276 1.276 13 N -1.092 6.092 14 S 2.703 3.297 15 O -0.987 6.987 16 O -0.988 6.988 17 C -0.669 4.669 18 C -0.038 4.038 19 C -0.123 4.123 20 C -0.032 4.032 21 C -0.004 4.004 22 C -0.190 4.190 23 C 0.518 3.482 24 O -0.550 6.550 25 O -0.498 6.498 26 C -0.111 4.111 27 C -0.033 4.033 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.418 0.582 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.429 0.571 40 H 0.172 0.828 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 8.504 6.576 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.180 4.180 3 C 0.166 3.834 4 H 0.037 0.963 5 C -0.637 4.637 6 H 0.078 0.922 7 C -0.215 4.215 8 N -0.568 5.568 9 Si 0.927 3.073 10 H -0.217 1.217 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.853 5.853 14 S 2.794 3.206 15 O -0.977 6.977 16 O -0.978 6.978 17 C -0.758 4.758 18 C -0.058 4.058 19 C -0.141 4.141 20 C -0.032 4.032 21 C -0.022 4.022 22 C -0.209 4.209 23 C 0.365 3.635 24 O -0.443 6.443 25 O -0.311 6.311 26 C -0.129 4.129 27 C -0.052 4.052 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.289 0.711 40 H 0.190 0.810 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.636 7.988 5.870 13.147 hybrid contribution 0.640 0.615 0.970 1.315 sum 9.275 8.604 6.840 14.382 Atomic orbital electron populations 1.21466 0.95076 1.00018 1.01549 1.21998 0.97841 0.98535 0.99589 1.18395 0.93264 0.89228 0.82485 0.96276 1.22242 1.30684 1.18687 0.92103 0.92244 1.26780 0.95688 0.95554 1.03500 1.70902 1.24343 1.27592 1.33969 0.83084 0.75900 0.75465 0.72859 1.21697 1.19801 1.20132 1.55219 1.29294 1.70803 1.29947 1.01265 0.73411 0.73423 0.72456 1.93512 1.72485 1.73530 1.58211 1.93528 1.82031 1.37447 1.84835 1.30972 1.18653 1.09229 1.16933 1.21024 0.91903 1.00770 0.92063 1.21817 0.99291 0.93512 0.99488 1.19387 0.94101 0.93180 0.96574 1.22539 0.89514 1.00532 0.89662 1.22438 0.91634 1.01874 1.04908 1.20959 0.83747 0.85659 0.73166 1.90939 1.83279 1.17191 1.52914 1.85036 1.26739 1.44475 1.74809 1.21833 0.91644 1.01887 0.97568 1.21127 0.99712 0.90936 0.93459 0.92842 0.93192 0.93437 0.93126 0.93900 0.92683 0.74605 0.84588 0.82170 0.82840 0.82427 0.71090 0.81033 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.47 71.98 0.68 -4.16 16 2 C -0.14 -6.17 5.59 30.59 0.17 -6.00 16 3 C 0.27 12.12 2.09 44.24 0.09 12.21 16 4 H 0.02 0.92 6.63 -2.38 -0.02 0.90 16 5 C -0.60 -29.02 7.46 25.60 0.19 -28.83 16 6 H 0.06 2.82 7.82 -2.91 -0.02 2.80 16 7 C -0.01 -0.75 5.26 84.65 0.45 -0.30 16 8 N -0.93 -51.06 12.89 21.45 0.28 -50.79 16 9 Si 1.10 46.07 29.91 68.60 2.05 48.12 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 13 N -1.09 -40.95 4.80 -172.53 -0.83 -41.78 16 14 S 2.70 95.96 5.65 -56.49 -0.32 95.64 16 15 O -0.99 -36.21 17.26 -128.00 -2.21 -38.42 16 16 O -0.99 -40.01 16.52 -128.00 -2.11 -42.13 16 17 C -0.67 -21.36 5.83 22.35 0.13 -21.23 16 18 C -0.04 -1.18 8.89 22.23 0.20 -0.98 16 19 C -0.12 -3.07 9.41 22.58 0.21 -2.85 16 20 C -0.03 -0.71 5.87 -20.15 -0.12 -0.83 16 21 C 0.00 -0.08 9.46 23.86 0.23 0.15 16 22 C -0.19 -3.34 9.53 23.58 0.22 -3.12 16 23 C 0.52 9.72 8.23 69.90 0.58 10.30 16 24 O -0.55 -13.32 16.96 19.44 0.33 -13.00 16 25 O -0.50 -6.90 13.56 -58.30 -0.79 -7.70 16 26 C -0.11 -2.42 9.80 22.58 0.22 -2.20 16 27 C -0.03 -0.89 9.50 22.23 0.21 -0.68 16 28 H 0.05 1.89 7.25 -2.39 -0.02 1.88 16 29 H 0.05 2.07 7.37 -2.39 -0.02 2.05 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.05 2.45 6.27 -2.38 -0.01 2.44 16 32 H 0.04 1.84 7.64 -2.39 -0.02 1.82 16 33 H 0.26 14.44 6.03 -92.71 -0.56 13.88 16 34 H 0.42 14.23 8.48 -96.74 -0.82 13.41 16 35 H 0.14 4.29 7.59 -2.91 -0.02 4.26 16 36 H 0.16 3.07 6.17 -2.91 -0.02 3.05 16 37 H 0.15 2.47 7.52 -2.91 -0.02 2.45 16 38 H 0.16 2.34 6.08 -2.91 -0.02 2.32 16 39 H 0.43 2.20 8.98 -74.06 -0.66 1.53 16 40 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.16 3.64 7.60 -2.91 -0.02 3.62 16 Total: -1.00 -69.73 362.89 -0.32 -70.04 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.18 Total: 28.53 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 3.46 Total: -48.53 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -0.55 Total: -92.57 kcal Atomic # 8 Polarization: -96.45 SS G_CDS: -4.78 Total: -101.24 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.05 Total: 48.12 kcal Atomic # 16 Polarization: 95.96 SS G_CDS: -0.32 Total: 95.64 kcal Total: -69.73 -0.32 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054176890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.466 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds