Wall clock time and date at job start Tue Mar 31 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 H 1.09007 * 109.47308 * 304.62672 * 3 2 1 5 5 C 1.50700 * 109.47113 * 184.62789 * 3 2 1 6 6 H 1.08000 * 119.99978 * 239.99536 * 5 3 2 7 7 C 1.37879 * 119.99931 * 60.00158 * 5 3 2 8 8 N 1.31511 * 120.00059 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47144 * 120.00003 * 9 7 5 12 12 H 1.48498 * 109.46950 * 239.99801 * 9 7 5 13 13 N 1.46503 * 109.47312 * 64.62766 * 3 2 1 14 14 S 1.65594 * 120.00220 * 215.22158 * 13 3 2 15 15 O 1.42105 * 106.40369 * 309.69395 * 14 13 3 16 16 O 1.42092 * 106.40505 * 176.77395 * 14 13 3 17 17 C 1.76202 * 107.21839 * 63.23358 * 14 13 3 18 18 C 1.38400 * 119.82702 * 264.31993 * 17 14 13 19 19 C 1.37892 * 120.17574 * 179.76112 * 18 17 14 20 20 C 1.39858 * 119.81838 * 0.51510 * 19 18 17 21 21 C 1.47170 * 120.16904 * 179.72041 * 20 19 18 22 22 C 1.34918 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.46239 * 119.99990 * 180.02562 * 22 21 20 24 24 O 1.21619 * 119.99729 * 359.97438 * 23 22 21 25 25 O 1.34905 * 119.99753 * 180.02562 * 23 22 21 26 26 C 1.39855 * 119.65731 * 359.74500 * 20 19 18 27 27 C 1.37884 * 119.82454 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.46762 * 184.58505 * 1 2 3 29 29 H 1.09005 * 109.46963 * 304.58133 * 1 2 3 30 30 H 1.08997 * 109.47589 * 64.58207 * 1 2 3 31 31 H 1.08999 * 109.47313 * 240.00451 * 2 1 3 32 32 H 1.08995 * 109.47614 * 119.99742 * 2 1 3 33 33 H 0.97004 * 119.99773 * 179.97438 * 8 7 5 34 34 H 0.96994 * 119.99666 * 35.21948 * 13 3 2 35 35 H 1.08001 * 119.91343 * 0.02562 * 18 17 14 36 36 H 1.07999 * 120.09002 * 180.27636 * 19 18 17 37 37 H 1.08000 * 120.00225 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.00033 * 359.97438 * 22 21 20 39 39 H 0.96699 * 113.99657 * 179.97438 * 25 23 22 40 40 H 1.08006 * 120.08478 * 180.02562 * 26 20 19 41 41 H 1.08000 * 119.91279 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6105 1.9798 -0.8457 5 6 3.5426 1.4441 -0.1146 6 1 4.1431 1.8905 0.6642 7 6 4.1507 0.8759 -1.2139 8 7 3.4195 0.3320 -2.1621 9 14 6.0134 0.8772 -1.3556 10 1 6.5998 1.5450 -0.1660 11 1 6.5050 -0.5219 -1.4311 12 1 6.4158 1.6102 -2.5827 13 7 1.6447 2.1003 1.2480 14 16 1.2427 3.7067 1.2461 15 8 2.2960 4.3832 0.5736 16 8 0.8388 4.0209 2.5717 17 6 -0.1889 3.8848 0.2344 18 6 -0.0520 4.2446 -1.0950 19 6 -1.1671 4.3813 -1.8945 20 6 -2.4397 4.1658 -1.3558 21 6 -3.6355 4.3156 -2.2005 22 6 -3.5057 4.6610 -3.4983 23 6 -4.6940 4.8104 -4.3375 24 8 -5.7991 4.6227 -3.8657 25 8 -4.5641 5.1553 -5.6352 26 6 -2.5700 3.8078 -0.0101 27 6 -1.4448 3.6695 0.7747 28 1 -0.3633 -1.0244 0.0822 29 1 -0.3633 0.5833 0.8461 30 1 -0.3634 0.4411 -0.9281 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8473 -0.0674 -2.9356 34 1 1.6185 1.5948 2.0754 35 1 0.9312 4.4146 -1.5084 36 1 -1.0584 4.6577 -2.9328 37 1 -4.6169 4.1489 -1.7816 38 1 -2.5243 4.8281 -3.9171 39 1 -5.4042 5.2292 -6.1084 40 1 -3.5494 3.6394 0.4129 41 1 -1.5438 3.3935 1.8142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054176891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:15 Heat of formation + Delta-G solvation = -130.624731 kcal Electronic energy + Delta-G solvation = -26993.182715 eV Core-core repulsion = 22965.235641 eV Total energy + Delta-G solvation = -4027.947074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46980 -39.33262 -36.70862 -36.48146 -35.99022 -35.26814 -34.52445 -32.21256 -31.23160 -30.67089 -30.23595 -26.66771 -25.53821 -23.18690 -23.01057 -22.36817 -20.24939 -19.78094 -19.08564 -18.59292 -17.72557 -17.18600 -16.96483 -16.34210 -15.86223 -15.62965 -15.49503 -15.07839 -14.65804 -14.40554 -13.88185 -13.74916 -13.52679 -13.37403 -13.08030 -13.02696 -12.77080 -12.23914 -11.95236 -11.94356 -11.69412 -11.53758 -11.43072 -11.25183 -11.17793 -10.97611 -10.96143 -10.88848 -10.81896 -10.58112 -10.21675 -9.89403 -9.84778 -9.72672 -9.10576 -8.80783 -8.46797 -8.29007 -6.10606 -4.16921 -0.09141 0.98615 1.27491 1.39134 2.62978 2.82904 3.27887 3.36339 3.42014 3.46689 3.78550 4.27346 4.40490 4.41692 4.44667 4.73933 4.77222 4.94463 5.01804 5.19238 5.24216 5.38454 5.56548 5.67420 5.80964 5.89630 6.03659 6.04313 6.08527 6.10647 6.13216 6.25505 6.29349 6.43985 6.72405 6.73366 6.88149 7.04921 7.51233 7.52093 7.60121 7.84447 8.04394 8.20215 8.87136 9.49619 10.93742 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003337 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.180106 B = 8387.916328 C = 9467.532489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 N -1.099 6.099 14 S 2.687 3.313 15 O -0.945 6.945 16 O -0.984 6.984 17 C -0.652 4.652 18 C -0.014 4.014 19 C -0.117 4.117 20 C -0.041 4.041 21 C -0.001 4.001 22 C -0.197 4.197 23 C 0.513 3.487 24 O -0.522 6.522 25 O -0.503 6.503 26 C -0.115 4.115 27 C -0.024 4.024 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.407 0.593 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.409 0.591 40 H 0.135 0.865 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 5.750 -1.464 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.059 0.941 5 C -0.559 4.559 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.860 5.860 14 S 2.774 3.226 15 O -0.935 6.935 16 O -0.974 6.974 17 C -0.737 4.737 18 C -0.033 4.033 19 C -0.136 4.136 20 C -0.041 4.041 21 C -0.019 4.019 22 C -0.216 4.216 23 C 0.359 3.641 24 O -0.413 6.413 25 O -0.313 6.313 26 C -0.134 4.134 27 C -0.043 4.043 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.267 0.733 40 H 0.153 0.847 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.599 6.366 -1.082 15.054 hybrid contribution -0.200 -0.535 -0.732 0.929 sum -13.799 5.831 -1.814 15.090 Atomic orbital electron populations 1.21839 0.99042 0.99487 1.00201 1.21881 0.91900 0.99422 1.03436 1.18575 0.94788 0.90172 0.78828 0.94059 1.21572 0.91189 1.37149 1.06001 0.91634 1.24894 0.98552 0.94949 0.95451 1.69844 1.35025 1.38651 1.09664 0.86452 0.85284 0.77520 0.78283 1.19607 1.21089 1.20908 1.55516 1.82748 1.29315 1.18454 1.02079 0.73799 0.73736 0.72990 1.93609 1.51451 1.72709 1.75711 1.93524 1.83980 1.83817 1.36045 1.31515 1.18620 1.13264 1.10257 1.21050 1.00229 0.90768 0.91272 1.21552 0.91534 1.00155 1.00358 1.19143 0.92541 0.98680 0.93783 1.22567 0.98172 0.88798 0.92412 1.22251 0.97418 1.07965 0.93945 1.20954 0.89447 0.72753 0.80978 1.90943 1.28393 1.47653 1.74324 1.85070 1.40893 1.81755 1.23559 1.21397 0.99228 1.00028 0.92750 1.20822 0.90763 0.92898 0.99806 0.94513 0.94300 0.93816 0.87558 0.93965 0.92762 0.75971 0.83157 0.84533 0.84101 0.83623 0.73350 0.84723 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.85 37.16 0.37 -2.20 16 2 C -0.13 -2.63 5.37 -26.73 -0.14 -2.78 16 3 C 0.28 6.21 2.17 -69.08 -0.15 6.06 16 4 H 0.04 0.97 7.41 -51.93 -0.38 0.58 16 5 C -0.52 -13.37 8.84 -34.44 -0.30 -13.67 16 6 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -23.50 11.29 55.43 0.63 -22.87 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -1.10 -20.55 4.81 -5.88 -0.03 -20.58 16 14 S 2.69 49.05 5.65 -107.50 -0.61 48.45 16 15 O -0.94 -20.55 16.93 -57.17 -0.97 -21.52 16 16 O -0.98 -18.60 17.41 -57.17 -1.00 -19.60 16 17 C -0.65 -10.18 5.70 -39.46 -0.22 -10.41 16 18 C -0.01 -0.21 9.16 -39.65 -0.36 -0.58 16 19 C -0.12 -1.46 9.41 -39.10 -0.37 -1.83 16 20 C -0.04 -0.47 5.87 -105.06 -0.62 -1.09 16 21 C 0.00 -0.01 9.46 -37.14 -0.35 -0.36 16 22 C -0.20 -1.86 9.54 -37.55 -0.36 -2.22 16 23 C 0.51 5.13 8.23 33.94 0.28 5.41 16 24 O -0.52 -6.56 16.96 -19.36 -0.33 -6.89 16 25 O -0.50 -3.88 13.56 -41.06 -0.56 -4.44 16 26 C -0.12 -1.30 9.80 -39.11 -0.38 -1.68 16 27 C -0.02 -0.31 9.50 -39.65 -0.38 -0.69 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.60 7.62 -51.93 -0.40 0.20 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 2.52 5.96 -51.93 -0.31 2.21 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.41 6.67 8.84 -34.46 -0.30 6.36 16 35 H 0.15 2.34 7.48 -52.49 -0.39 1.95 16 36 H 0.14 1.34 6.17 -52.49 -0.32 1.02 16 37 H 0.14 1.25 7.52 -52.49 -0.39 0.85 16 38 H 0.15 1.19 6.08 -52.48 -0.32 0.87 16 39 H 0.41 1.38 8.98 45.56 0.41 1.79 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 41 H 0.14 1.63 7.73 -52.49 -0.41 1.23 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -33.07 368.05 -9.48 -42.55 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.06 Total: 8.15 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -3.09 Total: -24.48 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.60 Total: -43.45 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -2.85 Total: -52.45 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.61 Total: 48.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.07 -9.48 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054176891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.079 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds