Wall clock time and date at job start Tue Mar 31 2020 23:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 H 1.09007 * 109.47308 * 304.62672 * 3 2 1 5 5 C 1.50700 * 109.47113 * 184.62789 * 3 2 1 6 6 H 1.08000 * 119.99978 * 239.99536 * 5 3 2 7 7 C 1.37879 * 119.99931 * 60.00158 * 5 3 2 8 8 N 1.31511 * 120.00059 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47144 * 120.00003 * 9 7 5 12 12 H 1.48498 * 109.46950 * 239.99801 * 9 7 5 13 13 N 1.46503 * 109.47312 * 64.62766 * 3 2 1 14 14 S 1.65594 * 120.00220 * 215.22158 * 13 3 2 15 15 O 1.42105 * 106.40369 * 309.69395 * 14 13 3 16 16 O 1.42092 * 106.40505 * 176.77395 * 14 13 3 17 17 C 1.76202 * 107.21839 * 63.23358 * 14 13 3 18 18 C 1.38400 * 119.82702 * 264.31993 * 17 14 13 19 19 C 1.37892 * 120.17574 * 179.76112 * 18 17 14 20 20 C 1.39858 * 119.81838 * 0.51510 * 19 18 17 21 21 C 1.47170 * 120.16904 * 179.72041 * 20 19 18 22 22 C 1.34918 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.46239 * 119.99990 * 180.02562 * 22 21 20 24 24 O 1.21619 * 119.99729 * 359.97438 * 23 22 21 25 25 O 1.34905 * 119.99753 * 180.02562 * 23 22 21 26 26 C 1.39855 * 119.65731 * 359.74500 * 20 19 18 27 27 C 1.37884 * 119.82454 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.46762 * 184.58505 * 1 2 3 29 29 H 1.09005 * 109.46963 * 304.58133 * 1 2 3 30 30 H 1.08997 * 109.47589 * 64.58207 * 1 2 3 31 31 H 1.08999 * 109.47313 * 240.00451 * 2 1 3 32 32 H 1.08995 * 109.47614 * 119.99742 * 2 1 3 33 33 H 0.97004 * 119.99773 * 179.97438 * 8 7 5 34 34 H 0.96994 * 119.99666 * 35.21948 * 13 3 2 35 35 H 1.08001 * 119.91343 * 0.02562 * 18 17 14 36 36 H 1.07999 * 120.09002 * 180.27636 * 19 18 17 37 37 H 1.08000 * 120.00225 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.00033 * 359.97438 * 22 21 20 39 39 H 0.96699 * 113.99657 * 179.97438 * 25 23 22 40 40 H 1.08006 * 120.08478 * 180.02562 * 26 20 19 41 41 H 1.08000 * 119.91279 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6105 1.9798 -0.8457 5 6 3.5426 1.4441 -0.1146 6 1 4.1431 1.8905 0.6642 7 6 4.1507 0.8759 -1.2139 8 7 3.4195 0.3320 -2.1621 9 14 6.0134 0.8772 -1.3556 10 1 6.5998 1.5450 -0.1660 11 1 6.5050 -0.5219 -1.4311 12 1 6.4158 1.6102 -2.5827 13 7 1.6447 2.1003 1.2480 14 16 1.2427 3.7067 1.2461 15 8 2.2960 4.3832 0.5736 16 8 0.8388 4.0209 2.5717 17 6 -0.1889 3.8848 0.2344 18 6 -0.0520 4.2446 -1.0950 19 6 -1.1671 4.3813 -1.8945 20 6 -2.4397 4.1658 -1.3558 21 6 -3.6355 4.3156 -2.2005 22 6 -3.5057 4.6610 -3.4983 23 6 -4.6940 4.8104 -4.3375 24 8 -5.7991 4.6227 -3.8657 25 8 -4.5641 5.1553 -5.6352 26 6 -2.5700 3.8078 -0.0101 27 6 -1.4448 3.6695 0.7747 28 1 -0.3633 -1.0244 0.0822 29 1 -0.3633 0.5833 0.8461 30 1 -0.3634 0.4411 -0.9281 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8473 -0.0674 -2.9356 34 1 1.6185 1.5948 2.0754 35 1 0.9312 4.4146 -1.5084 36 1 -1.0584 4.6577 -2.9328 37 1 -4.6169 4.1489 -1.7816 38 1 -2.5243 4.8281 -3.9171 39 1 -5.4042 5.2292 -6.1084 40 1 -3.5494 3.6394 0.4129 41 1 -1.5438 3.3935 1.8142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054176891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:14 Heat of formation + Delta-G solvation = -153.988510 kcal Electronic energy + Delta-G solvation = -26994.195844 eV Core-core repulsion = 22965.235641 eV Total energy + Delta-G solvation = -4028.960203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22933 -40.29726 -38.25901 -37.66160 -37.19117 -36.82430 -35.40490 -34.11982 -32.22286 -32.20240 -31.16892 -28.49905 -26.41165 -24.84996 -24.05663 -23.30599 -21.90325 -20.71968 -20.30599 -19.39744 -18.97213 -18.69652 -18.09272 -17.89996 -17.13175 -16.60944 -16.52946 -16.45780 -15.98247 -15.60222 -15.29353 -14.86627 -14.70573 -14.62990 -14.46088 -14.21002 -13.77914 -13.56311 -13.34194 -13.13116 -13.09726 -13.01082 -12.99466 -12.68989 -12.65291 -12.58640 -12.14328 -12.07015 -11.97212 -11.78235 -11.74455 -11.57304 -11.53034 -11.36661 -10.42863 -10.10277 -9.99115 -9.72348 -8.08032 -6.19738 -1.00585 -0.42496 0.28822 0.47157 1.41834 1.45983 1.56156 1.83278 2.17065 2.23298 2.47710 2.58366 2.89762 3.18757 3.42104 3.58026 3.72150 3.86041 4.09569 4.21601 4.31861 4.34751 4.50222 4.60108 4.63898 4.72881 4.81004 4.90569 4.94464 4.98285 5.08240 5.16570 5.19194 5.38865 5.40181 5.43142 5.47820 5.71386 5.74668 5.83601 6.05036 6.31228 6.48338 6.86999 6.88081 7.48536 8.94070 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003337 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.180106 B = 8387.916328 C = 9467.532489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.287 3.713 4 H 0.027 0.973 5 C -0.540 4.540 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.282 1.282 13 N -1.098 6.098 14 S 2.697 3.303 15 O -0.991 6.991 16 O -0.993 6.993 17 C -0.664 4.664 18 C -0.037 4.037 19 C -0.121 4.121 20 C -0.031 4.031 21 C -0.002 4.002 22 C -0.192 4.192 23 C 0.517 3.483 24 O -0.550 6.550 25 O -0.499 6.499 26 C -0.108 4.108 27 C -0.029 4.029 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.416 0.584 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.428 0.572 40 H 0.173 0.827 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 5.648 -1.813 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.182 3.818 4 H 0.045 0.955 5 C -0.579 4.579 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.208 1.208 13 N -0.859 5.859 14 S 2.790 3.210 15 O -0.981 6.981 16 O -0.983 6.983 17 C -0.753 4.753 18 C -0.056 4.056 19 C -0.139 4.139 20 C -0.031 4.031 21 C -0.020 4.020 22 C -0.210 4.210 23 C 0.364 3.636 24 O -0.444 6.444 25 O -0.312 6.312 26 C -0.126 4.126 27 C -0.049 4.049 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.289 0.711 40 H 0.190 0.810 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.925 6.255 -1.408 17.167 hybrid contribution 0.412 -0.425 -0.725 0.936 sum -15.513 5.829 -2.133 16.709 Atomic orbital electron populations 1.21733 0.96065 1.01052 1.00810 1.21710 0.94566 0.97816 1.02080 1.18284 0.92753 0.91123 0.79616 0.95500 1.21878 0.93357 1.36976 1.05714 0.93295 1.25471 1.01688 0.94997 0.95457 1.69932 1.35990 1.38983 1.09845 0.85733 0.81705 0.77755 0.77819 1.20138 1.20111 1.20787 1.55278 1.83365 1.29322 1.17941 1.01335 0.73988 0.72959 0.72759 1.93547 1.54443 1.73630 1.76474 1.93500 1.84197 1.83748 1.36840 1.30895 1.17920 1.16396 1.10095 1.21019 1.00537 0.92421 0.91653 1.21787 0.91203 0.99716 1.01206 1.19359 0.92585 0.96978 0.94195 1.22544 0.97860 0.89284 0.92336 1.22439 0.97871 1.06789 0.93947 1.20995 0.89005 0.72069 0.81508 1.90939 1.29414 1.49058 1.74978 1.85037 1.42428 1.81001 1.22687 1.21813 1.00167 0.98264 0.92392 1.21102 0.90249 0.92634 1.00882 0.92644 0.92335 0.94320 0.90476 0.93714 0.92680 0.74844 0.85031 0.82313 0.82814 0.82461 0.71140 0.80950 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.85 71.98 0.71 -3.88 16 2 C -0.12 -5.06 5.37 30.59 0.16 -4.90 16 3 C 0.29 12.99 2.17 44.25 0.10 13.09 16 4 H 0.03 1.31 7.41 -2.38 -0.02 1.29 16 5 C -0.54 -28.57 8.84 25.60 0.23 -28.35 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -48.57 11.29 21.45 0.24 -48.33 16 9 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -1.10 -41.64 4.81 -172.50 -0.83 -42.47 16 14 S 2.70 100.66 5.65 -56.49 -0.32 100.34 16 15 O -0.99 -45.26 16.93 -128.00 -2.17 -47.43 16 16 O -0.99 -37.57 17.41 -128.00 -2.23 -39.80 16 17 C -0.66 -20.53 5.70 22.35 0.13 -20.40 16 18 C -0.04 -1.12 9.16 22.23 0.20 -0.92 16 19 C -0.12 -2.81 9.41 22.58 0.21 -2.60 16 20 C -0.03 -0.61 5.87 -20.15 -0.12 -0.73 16 21 C 0.00 -0.03 9.46 23.85 0.23 0.20 16 22 C -0.19 -3.05 9.54 23.59 0.22 -2.83 16 23 C 0.52 8.99 8.23 69.90 0.58 9.57 16 24 O -0.55 -12.58 16.96 19.45 0.33 -12.25 16 25 O -0.50 -6.37 13.56 -58.20 -0.79 -7.16 16 26 C -0.11 -2.06 9.80 22.58 0.22 -1.84 16 27 C -0.03 -0.72 9.50 22.22 0.21 -0.51 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.68 7.62 -2.38 -0.02 1.66 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 3.70 5.96 -2.39 -0.01 3.68 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.42 13.68 8.84 -96.75 -0.86 12.82 16 35 H 0.13 4.38 7.48 -2.91 -0.02 4.36 16 36 H 0.16 2.83 6.17 -2.91 -0.02 2.81 16 37 H 0.15 2.14 7.52 -2.91 -0.02 2.12 16 38 H 0.16 2.09 6.08 -2.91 -0.02 2.07 16 39 H 0.43 1.78 8.98 -74.06 -0.66 1.12 16 40 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.16 3.23 7.73 -2.91 -0.02 3.21 16 Total: -1.00 -72.10 368.05 -0.64 -72.74 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.43 Total: 21.64 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 3.53 Total: -42.37 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -0.59 Total: -90.80 kcal Atomic # 8 Polarization: -101.78 SS G_CDS: -4.86 Total: -106.63 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 100.66 SS G_CDS: -0.32 Total: 100.34 kcal Total: -72.10 -0.64 -72.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054176891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.253 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds