Wall clock time and date at job start Tue Mar 31 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00547 * 2 1 4 4 O 1.20825 * 119.99371 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00328 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47160 * 180.02562 * 5 3 2 7 7 C 1.35965 * 116.99975 * 179.97438 * 6 5 3 8 8 C 1.38746 * 119.98664 * 0.02593 * 7 6 5 9 9 C 1.38062 * 120.01661 * 179.97438 * 8 7 6 10 10 C 1.38864 * 119.98543 * 0.02562 * 9 8 7 11 11 N 1.40115 * 120.01773 * 180.25716 * 10 9 8 12 12 C 1.34786 * 119.99600 * 325.27166 * 11 10 9 13 13 O 1.21294 * 120.00170 * 4.50313 * 12 11 10 14 14 C 1.50694 * 119.99738 * 184.50286 * 12 11 10 15 15 S 1.80998 * 109.46943 * 180.02562 * 14 12 11 16 16 C 1.76205 * 100.00053 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46908 * 60.00481 * 20 18 16 22 22 H 1.48501 * 109.46891 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47200 * 300.00529 * 20 18 16 24 24 C 1.38827 * 119.96959 * 359.97438 * 10 9 8 25 25 C 1.50704 * 120.00636 * 180.02562 * 24 10 9 26 26 C 1.38111 * 119.98657 * 359.97438 * 24 10 9 27 27 H 1.09002 * 109.47073 * 59.99653 * 1 2 3 28 28 H 1.08999 * 109.47760 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47058 * 300.00219 * 1 2 3 30 30 H 1.08996 * 109.47280 * 59.99517 * 5 3 2 31 31 H 1.09006 * 109.46873 * 299.99737 * 5 3 2 32 32 H 1.08001 * 119.99361 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00669 * 180.02562 * 9 8 7 34 34 H 0.96993 * 120.00328 * 145.26897 * 11 10 9 35 35 H 1.09000 * 109.47609 * 299.99913 * 14 12 11 36 36 H 1.08996 * 109.47310 * 60.00239 * 14 12 11 37 37 H 0.97006 * 120.00082 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46833 * 90.00216 * 25 24 10 39 39 H 1.08997 * 109.47417 * 210.00217 * 25 24 10 40 40 H 1.08998 * 109.47295 * 330.00329 * 25 24 10 41 41 H 1.07991 * 119.99111 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9716 2.6451 0.0011 7 6 5.3084 2.8935 0.0022 8 6 6.2097 1.8386 0.0022 9 6 7.5672 2.0901 0.0028 10 6 8.0305 3.3992 0.0039 11 7 9.4081 3.6552 -0.0010 12 6 10.2485 2.8337 0.6589 13 8 9.8231 1.8286 1.1881 14 6 11.7166 3.1639 0.7393 15 16 12.5733 1.8788 1.6830 16 6 14.2210 2.5001 1.6201 17 1 14.4305 3.4232 1.1001 18 6 15.2493 1.8037 2.2398 19 7 14.9939 0.6789 2.8739 20 14 16.9962 2.4620 2.1725 21 1 17.0432 3.8062 2.8019 22 1 17.9011 1.5401 2.9050 23 1 17.4331 2.5627 0.7568 24 6 7.1282 4.4542 0.0038 25 6 7.6300 5.8752 0.0044 26 6 5.7704 4.2012 0.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9565 0.7804 -0.8891 31 1 3.9557 0.7808 0.8909 32 1 5.8493 0.8205 0.0018 33 1 8.2687 1.2689 0.0024 34 1 9.7569 4.4236 -0.4792 35 1 12.1334 3.2142 -0.2667 36 1 11.8460 4.1262 1.2347 37 1 15.7127 0.1920 3.3067 38 1 7.7514 6.2181 -1.0232 39 1 6.9117 6.5141 0.5181 40 1 8.5900 5.9213 0.5185 41 1 5.0684 5.0219 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055907857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:43 Heat of formation + Delta-G solvation = -125.446821 kcal Electronic energy + Delta-G solvation = -25317.782964 eV Core-core repulsion = 21290.060422 eV Total energy + Delta-G solvation = -4027.722543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11842 -40.58482 -39.46065 -37.68030 -36.79962 -34.29740 -32.64760 -32.47417 -30.90063 -29.84720 -28.39523 -27.12374 -26.83677 -25.51747 -23.11816 -22.26921 -20.94464 -20.39782 -18.62649 -18.17484 -17.50014 -17.43954 -17.35634 -17.11594 -16.52878 -15.88802 -15.67158 -14.92645 -14.84557 -14.46157 -14.34330 -14.04775 -13.98328 -13.61431 -13.52770 -13.39031 -13.26688 -12.73553 -12.60980 -12.48590 -12.40064 -12.19657 -12.05666 -11.45827 -11.30853 -11.18049 -11.09108 -11.06963 -10.84220 -10.80915 -9.93399 -9.88700 -9.48704 -9.10249 -8.89836 -8.32222 -7.77493 -6.56581 -6.26254 -3.97852 1.14549 1.29922 1.67300 1.69935 2.85267 2.91423 3.20134 3.20819 3.24830 3.27515 3.58795 3.66371 4.15591 4.17293 4.50413 4.53807 4.63397 4.64586 4.72687 4.76402 4.93443 4.95891 5.04974 5.09180 5.14117 5.25050 5.41650 5.47422 5.59217 5.69264 5.76837 5.80826 5.87155 6.00450 6.03804 6.24975 6.32597 6.40006 6.74130 7.13298 7.24905 7.48793 7.55001 8.30214 8.38591 9.19097 10.81064 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.001846 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.209760 B =15160.982633 C =16201.460423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.484 6.484 5 C 0.069 3.931 6 O -0.298 6.298 7 C 0.107 3.893 8 C -0.192 4.192 9 C -0.077 4.077 10 C 0.124 3.876 11 N -0.677 5.677 12 C 0.532 3.468 13 O -0.499 6.499 14 C -0.154 4.154 15 S -0.056 6.056 16 C -0.538 4.538 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.077 4.077 25 C -0.115 4.115 26 C -0.128 4.128 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.409 0.591 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.270 0.730 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.277 4.058 -8.859 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.370 6.370 5 C -0.008 4.008 6 O -0.211 6.211 7 C 0.062 3.938 8 C -0.212 4.212 9 C -0.098 4.098 10 C 0.030 3.970 11 N -0.324 5.324 12 C 0.319 3.681 13 O -0.371 6.371 14 C -0.305 4.305 15 S 0.170 5.830 16 C -0.686 4.686 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.079 4.079 25 C -0.172 4.172 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.245 0.755 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.229 2.668 -7.838 26.553 hybrid contribution 1.647 1.729 -0.821 2.525 sum -23.582 4.396 -8.659 25.503 Atomic orbital electron populations 1.23345 0.75251 1.04114 1.02899 1.86452 1.24114 1.32368 1.84338 1.23036 0.91065 0.81914 0.73454 1.90724 1.66697 1.36197 1.43361 1.21839 0.88673 0.84494 1.05769 1.86041 1.21214 1.24189 1.89705 1.18823 0.80932 0.94238 0.99761 1.21132 0.93460 0.98253 1.08320 1.21194 0.95137 0.96505 0.96926 1.17562 0.83149 0.93122 1.03207 1.43634 1.04367 1.31066 1.53350 1.20530 0.88084 0.82718 0.76733 1.90689 1.77427 1.25042 1.43970 1.23543 0.93303 1.07277 1.06351 1.85405 1.03144 1.27024 1.67394 1.22820 0.92835 1.12026 1.40930 0.90879 1.24988 0.99421 0.94656 0.94423 1.69998 1.33372 1.14422 1.32433 0.86216 0.82042 0.78759 0.78442 1.19905 1.20783 1.19909 1.19460 0.91795 0.95184 1.01492 1.20759 1.02089 0.91799 1.02562 1.19981 0.94324 0.94122 1.06270 0.91610 0.87579 0.91569 0.87434 0.87342 0.85102 0.83372 0.75526 0.88827 0.88816 0.92060 0.90805 0.90878 0.91132 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.78 10.56 -39.26 -0.41 -3.20 16 3 C 0.46 4.44 8.03 36.01 0.29 4.73 16 4 O -0.48 -6.26 16.25 -25.48 -0.41 -6.68 16 5 C 0.07 0.56 5.33 36.01 0.19 0.75 16 6 O -0.30 -3.40 9.67 -39.58 -0.38 -3.78 16 7 C 0.11 1.25 6.69 -39.22 -0.26 0.99 16 8 C -0.19 -2.23 9.03 -39.46 -0.36 -2.59 16 9 C -0.08 -1.08 8.70 -39.41 -0.34 -1.42 16 10 C 0.12 1.66 6.29 -83.62 -0.53 1.14 16 11 N -0.68 -8.99 4.75 -9.83 -0.05 -9.04 16 12 C 0.53 9.40 7.69 -10.98 -0.08 9.31 16 13 O -0.50 -10.56 13.28 5.55 0.07 -10.48 16 14 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 15 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 16 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 20 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.08 -0.86 5.89 -104.45 -0.62 -1.48 16 25 C -0.12 -0.96 9.47 36.01 0.34 -0.62 16 26 C -0.13 -1.44 9.63 -39.46 -0.38 -1.82 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.11 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.11 0.69 7.66 -51.93 -0.40 0.29 16 32 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 33 H 0.15 2.33 6.19 -52.49 -0.32 2.01 16 34 H 0.41 4.06 7.84 -40.82 -0.32 3.74 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.07 0.59 7.17 -51.93 -0.37 0.22 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -36.18 371.55 -7.41 -43.60 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.07 Total: 1.74 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.26 Total: -5.10 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.69 Total: -33.97 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.14 Total: -24.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.18 -7.41 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055907857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.851 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds