Wall clock time and date at job start Tue Mar 31 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00547 * 2 1 4 4 O 1.20825 * 119.99371 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00328 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47160 * 180.02562 * 5 3 2 7 7 C 1.35965 * 116.99975 * 179.97438 * 6 5 3 8 8 C 1.38746 * 119.98664 * 0.02593 * 7 6 5 9 9 C 1.38062 * 120.01661 * 179.97438 * 8 7 6 10 10 C 1.38864 * 119.98543 * 0.02562 * 9 8 7 11 11 N 1.40115 * 120.01773 * 180.25716 * 10 9 8 12 12 C 1.34786 * 119.99600 * 325.27166 * 11 10 9 13 13 O 1.21294 * 120.00170 * 4.50313 * 12 11 10 14 14 C 1.50694 * 119.99738 * 184.50286 * 12 11 10 15 15 S 1.80998 * 109.46943 * 180.02562 * 14 12 11 16 16 C 1.76205 * 100.00053 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46908 * 60.00481 * 20 18 16 22 22 H 1.48501 * 109.46891 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47200 * 300.00529 * 20 18 16 24 24 C 1.38827 * 119.96959 * 359.97438 * 10 9 8 25 25 C 1.50704 * 120.00636 * 180.02562 * 24 10 9 26 26 C 1.38111 * 119.98657 * 359.97438 * 24 10 9 27 27 H 1.09002 * 109.47073 * 59.99653 * 1 2 3 28 28 H 1.08999 * 109.47760 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47058 * 300.00219 * 1 2 3 30 30 H 1.08996 * 109.47280 * 59.99517 * 5 3 2 31 31 H 1.09006 * 109.46873 * 299.99737 * 5 3 2 32 32 H 1.08001 * 119.99361 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00669 * 180.02562 * 9 8 7 34 34 H 0.96993 * 120.00328 * 145.26897 * 11 10 9 35 35 H 1.09000 * 109.47609 * 299.99913 * 14 12 11 36 36 H 1.08996 * 109.47310 * 60.00239 * 14 12 11 37 37 H 0.97006 * 120.00082 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46833 * 90.00216 * 25 24 10 39 39 H 1.08997 * 109.47417 * 210.00217 * 25 24 10 40 40 H 1.08998 * 109.47295 * 330.00329 * 25 24 10 41 41 H 1.07991 * 119.99111 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9716 2.6451 0.0011 7 6 5.3084 2.8935 0.0022 8 6 6.2097 1.8386 0.0022 9 6 7.5672 2.0901 0.0028 10 6 8.0305 3.3992 0.0039 11 7 9.4081 3.6552 -0.0010 12 6 10.2485 2.8337 0.6589 13 8 9.8231 1.8286 1.1881 14 6 11.7166 3.1639 0.7393 15 16 12.5733 1.8788 1.6830 16 6 14.2210 2.5001 1.6201 17 1 14.4305 3.4232 1.1001 18 6 15.2493 1.8037 2.2398 19 7 14.9939 0.6789 2.8739 20 14 16.9962 2.4620 2.1725 21 1 17.0432 3.8062 2.8019 22 1 17.9011 1.5401 2.9050 23 1 17.4331 2.5627 0.7568 24 6 7.1282 4.4542 0.0038 25 6 7.6300 5.8752 0.0044 26 6 5.7704 4.2012 0.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9565 0.7804 -0.8891 31 1 3.9557 0.7808 0.8909 32 1 5.8493 0.8205 0.0018 33 1 8.2687 1.2689 0.0024 34 1 9.7569 4.4236 -0.4792 35 1 12.1334 3.2142 -0.2667 36 1 11.8460 4.1262 1.2347 37 1 15.7127 0.1920 3.3067 38 1 7.7514 6.2181 -1.0232 39 1 6.9117 6.5141 0.5181 40 1 8.5900 5.9213 0.5185 41 1 5.0684 5.0219 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055907857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:43 Heat of formation + Delta-G solvation = -148.694723 kcal Electronic energy + Delta-G solvation = -25318.791069 eV Core-core repulsion = 21290.060422 eV Total energy + Delta-G solvation = -4028.730647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94623 -41.54430 -40.49803 -38.68388 -37.56060 -35.46916 -34.57533 -33.50725 -31.90768 -30.91549 -29.28625 -27.90764 -27.63911 -27.52814 -24.15752 -23.05061 -21.78646 -21.62975 -19.90578 -19.36736 -18.71286 -18.28686 -18.05392 -18.03561 -17.71925 -16.86731 -16.81409 -16.53754 -16.11505 -16.08658 -15.32899 -15.02409 -14.87124 -14.72605 -14.51974 -14.31416 -14.21179 -14.15651 -13.68703 -13.37795 -13.16280 -13.11688 -12.99412 -12.86075 -12.82410 -12.62259 -12.39602 -12.04865 -11.90666 -11.75314 -11.63029 -11.12584 -11.08454 -10.79698 -10.28327 -9.79819 -8.78274 -8.64261 -8.33870 -6.11784 0.22274 0.32668 0.94849 1.04697 1.25134 1.44987 1.46226 1.53863 1.57092 2.16989 2.27993 2.49953 2.71457 3.00658 3.29958 3.53022 3.78340 3.80580 3.92847 3.97704 3.98547 4.13245 4.26450 4.28073 4.30459 4.32336 4.42597 4.49888 4.61469 4.69167 4.83674 4.92815 4.97691 5.17791 5.24163 5.30590 5.38716 5.43070 5.46370 5.74396 6.20498 6.25669 6.38556 6.54604 7.07747 7.11896 8.74880 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.001846 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.209760 B =15160.982633 C =16201.460423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.469 3.531 4 O -0.525 6.525 5 C 0.061 3.939 6 O -0.313 6.313 7 C 0.111 3.889 8 C -0.193 4.193 9 C -0.097 4.097 10 C 0.098 3.902 11 N -0.653 5.653 12 C 0.534 3.466 13 O -0.541 6.541 14 C -0.129 4.129 15 S -0.145 6.145 16 C -0.548 4.548 17 H 0.085 0.915 18 C 0.015 3.985 19 N -0.911 5.911 20 Si 0.997 3.003 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.066 4.066 25 C -0.116 4.116 26 C -0.136 4.136 27 H 0.065 0.935 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.426 0.574 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.271 0.729 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.630 5.772 -9.984 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.312 3.688 4 O -0.414 6.414 5 C -0.014 4.014 6 O -0.227 6.227 7 C 0.066 3.934 8 C -0.212 4.212 9 C -0.118 4.118 10 C 0.004 3.996 11 N -0.301 5.301 12 C 0.322 3.678 13 O -0.417 6.417 14 C -0.281 4.281 15 S 0.082 5.918 16 C -0.696 4.696 17 H 0.103 0.897 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.069 4.069 25 C -0.173 4.173 26 C -0.154 4.154 27 H 0.083 0.917 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.141 0.859 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.613 4.405 -8.999 27.502 hybrid contribution 1.509 1.190 -0.532 1.994 sum -24.104 5.595 -9.530 26.516 Atomic orbital electron populations 1.23644 0.73806 1.06148 1.02798 1.86456 1.25560 1.31343 1.83724 1.23320 0.91551 0.81763 0.72197 1.90707 1.67632 1.37496 1.45553 1.22158 0.87902 0.83352 1.07998 1.86018 1.20862 1.26267 1.89581 1.18937 0.81113 0.94466 0.98914 1.21285 0.92482 0.99639 1.07780 1.21136 0.95844 0.96327 0.98445 1.17729 0.83006 0.93662 1.05188 1.43242 1.04187 1.30540 1.52101 1.20257 0.87885 0.82729 0.76937 1.90687 1.77900 1.26976 1.46169 1.23363 0.93513 1.04985 1.06194 1.85572 1.04756 1.31699 1.69774 1.23188 0.93159 1.12355 1.40862 0.89733 1.26100 1.04364 0.94777 0.93785 1.70168 1.34840 1.16070 1.33654 0.85024 0.75841 0.78286 0.78982 1.18677 1.20546 1.18648 1.19712 0.91399 0.96089 0.99655 1.20867 1.02287 0.89965 1.04146 1.20289 0.94669 0.94634 1.05859 0.91657 0.84488 0.91818 0.84774 0.85337 0.82811 0.85850 0.73443 0.86637 0.86721 0.92011 0.88639 0.89567 0.91126 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.07 10.56 -51.42 -0.54 -5.61 16 3 C 0.47 8.51 8.03 71.24 0.57 9.09 16 4 O -0.53 -13.46 16.25 28.40 0.46 -13.00 16 5 C 0.06 0.89 5.33 71.24 0.38 1.27 16 6 O -0.31 -6.71 9.67 -74.08 -0.72 -7.42 16 7 C 0.11 2.42 6.69 22.50 0.15 2.57 16 8 C -0.19 -4.30 9.03 22.35 0.20 -4.09 16 9 C -0.10 -2.73 8.70 22.38 0.19 -2.53 16 10 C 0.10 2.54 6.29 38.11 0.24 2.78 16 11 N -0.65 -16.54 4.75 -303.38 -1.44 -17.98 16 12 C 0.53 18.82 7.69 87.65 0.67 19.49 16 13 O -0.54 -23.66 13.28 -3.07 -0.04 -23.71 16 14 C -0.13 -4.83 6.16 71.23 0.44 -4.39 16 15 S -0.15 -7.79 20.57 -56.49 -1.16 -8.95 16 16 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 17 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 18 C 0.01 0.82 5.49 84.86 0.47 1.28 16 19 N -0.91 -55.10 13.22 21.65 0.29 -54.81 16 20 Si 1.00 42.71 29.55 68.60 2.03 44.74 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 C -0.07 -1.36 5.89 -19.75 -0.12 -1.47 16 25 C -0.12 -1.59 9.47 71.24 0.67 -0.91 16 26 C -0.14 -2.80 9.63 22.35 0.22 -2.58 16 27 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 28 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.13 1.24 7.66 -2.39 -0.02 1.22 16 31 H 0.13 1.37 7.66 -2.38 -0.02 1.35 16 32 H 0.15 2.52 6.29 -2.91 -0.02 2.50 16 33 H 0.12 4.09 6.19 -2.91 -0.02 4.07 16 34 H 0.43 7.48 7.84 -92.71 -0.73 6.76 16 35 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 36 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 37 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 40 H 0.07 0.98 7.17 -2.39 -0.02 0.97 16 41 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -81.46 371.55 5.15 -76.30 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.35 Total: 18.30 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.93 Total: -7.85 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -1.16 Total: -72.79 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.84 Total: -49.74 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -81.46 5.15 -76.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055907857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.393 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds