Wall clock time and date at job start Tue Mar 31 2020 22:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34716 * 117.00135 * 2 1 4 4 O 1.21472 * 119.99610 * 0.02562 * 3 2 1 5 5 C 1.47726 * 120.00035 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.14704 * 0.02562 * 5 3 2 7 7 C 1.37918 * 119.84767 * 179.97438 * 6 5 3 8 8 C 1.38393 * 120.14746 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.84598 * 179.97438 * 8 7 6 10 10 C 1.38340 * 120.30354 * 0.02562 * 8 7 6 11 11 S 1.76205 * 119.92436 * 180.27594 * 10 8 7 12 12 O 1.42101 * 106.40552 * 48.25951 * 11 10 8 13 13 O 1.42099 * 106.40066 * 181.18221 * 11 10 8 14 14 N 1.65605 * 107.21507 * 294.71720 * 11 10 8 15 15 C 1.36939 * 119.99588 * 90.00584 * 14 11 10 16 16 H 1.08001 * 119.99226 * 230.00817 * 15 14 11 17 17 C 1.38809 * 120.00242 * 50.00303 * 15 14 11 18 18 N 1.31616 * 120.00134 * 23.10632 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 203.10315 * 17 15 14 20 20 H 1.48498 * 109.47354 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47268 * 120.00561 * 19 17 15 22 22 H 1.48505 * 109.47262 * 239.99898 * 19 17 15 23 23 C 1.46500 * 120.00074 * 269.99985 * 14 11 10 24 24 C 1.53002 * 117.49695 * 187.82964 * 23 14 11 25 25 C 1.52997 * 117.49675 * 119.17327 * 23 14 11 26 26 C 1.37960 * 120.15327 * 359.97438 * 10 8 7 27 27 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46746 * 299.99769 * 1 2 3 29 29 H 1.09001 * 109.47086 * 59.99297 * 1 2 3 30 30 H 1.08007 * 120.08168 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92908 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47381 * 269.99684 * 9 8 7 33 33 H 1.08997 * 109.47400 * 30.00029 * 9 8 7 34 34 H 1.09001 * 109.46883 * 150.00118 * 9 8 7 35 35 H 0.96999 * 119.99945 * 174.17609 * 18 17 15 36 36 H 1.08997 * 115.54939 * 333.49964 * 23 14 11 37 37 H 1.09004 * 117.49661 * 359.97438 * 24 23 14 38 38 H 1.08994 * 117.49671 * 145.01997 * 24 23 14 39 39 H 1.09003 * 117.49323 * 214.98184 * 25 23 14 40 40 H 1.09003 * 117.50070 * 359.97438 * 25 23 14 41 41 H 1.07998 * 120.07947 * 179.97438 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3024 0.1084 -0.0017 7 6 5.6793 0.1877 -0.0027 8 6 6.3044 1.4225 -0.0022 9 6 7.8094 1.5013 -0.0028 10 6 5.5540 2.5847 0.0000 11 16 6.3602 4.1515 -0.0067 12 8 7.3454 4.0915 -1.0290 13 8 5.3321 5.1319 0.0253 14 7 7.1802 4.2869 1.4257 15 6 8.4745 3.8493 1.5177 16 1 8.7672 3.1955 2.3259 17 6 9.4101 4.2460 0.5721 18 7 9.2200 5.3498 -0.1190 19 14 10.9391 3.2131 0.2807 20 1 10.9165 2.0309 1.1790 21 1 10.9687 2.7606 -1.1334 22 1 12.1481 4.0273 0.5652 23 6 6.5209 4.8749 2.5944 24 6 7.3812 5.1413 3.8312 25 6 6.3673 3.9946 3.8362 26 6 4.1760 2.5198 0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8159 -0.8559 -0.0025 31 1 6.2712 -0.7157 -0.0040 32 1 8.1727 1.5197 1.0248 33 1 8.2185 0.6319 -0.5173 34 1 8.1254 2.4094 -0.5161 35 1 9.9116 5.6722 -0.7179 36 1 5.7204 5.5818 2.3764 37 1 8.4377 4.8786 3.7755 38 1 7.1464 6.0232 4.4272 39 1 5.4658 4.1225 4.4354 40 1 6.7564 2.9777 3.7836 41 1 3.5913 3.4279 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063518887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:04 Heat of formation + Delta-G solvation = -85.414135 kcal Electronic energy + Delta-G solvation = -28607.891090 eV Core-core repulsion = 24581.904495 eV Total energy + Delta-G solvation = -4025.986595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45080 -38.67289 -37.23743 -36.39328 -35.88555 -34.24607 -33.41165 -32.59978 -30.86898 -30.69737 -28.37726 -26.67763 -25.01763 -22.81638 -22.62348 -21.60534 -20.69213 -20.58065 -18.98094 -18.29863 -17.12068 -16.59652 -16.34344 -16.07916 -15.49583 -15.20571 -15.01978 -14.99992 -14.28431 -13.96316 -13.85914 -13.57435 -13.37831 -13.26593 -13.04940 -12.43906 -12.27084 -11.92857 -11.88065 -11.75402 -11.53510 -11.40062 -11.18991 -11.03436 -10.86378 -10.84124 -10.66212 -10.50770 -10.49110 -10.37853 -10.21207 -10.01727 -9.50226 -9.39863 -8.97356 -8.74033 -8.51415 -7.60499 -6.63566 -4.25733 0.87039 1.37479 1.89010 2.62561 2.68949 3.10479 3.16269 3.22437 3.83406 3.99872 4.48835 4.66775 4.76839 4.81464 4.97060 4.99634 5.06230 5.14192 5.21218 5.34274 5.43131 5.59532 5.70193 5.74074 5.79062 5.82775 6.00977 6.07252 6.14966 6.26317 6.29138 6.38414 6.38805 6.42084 6.51188 6.66854 6.75337 6.95411 7.01657 7.18970 7.27952 7.44336 7.78734 8.08470 8.76536 9.20883 10.41491 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.004514 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.218956 B = 6201.864462 C = 6779.578701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.512 3.488 4 O -0.507 6.507 5 C -0.171 4.171 6 C -0.029 4.029 7 C -0.167 4.167 8 C 0.066 3.934 9 C -0.180 4.180 10 C -0.681 4.681 11 S 2.564 3.436 12 O -0.940 6.940 13 O -1.009 7.009 14 N -0.785 5.785 15 C -0.282 4.282 16 H 0.085 0.915 17 C 0.061 3.939 18 N -0.769 5.769 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.269 1.269 22 H -0.278 1.278 23 C 0.096 3.904 24 C -0.161 4.161 25 C -0.213 4.213 26 C 0.035 3.965 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.282 0.718 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -10.280 3.495 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.173 4.173 6 C -0.048 4.048 7 C -0.186 4.186 8 C 0.065 3.935 9 C -0.236 4.236 10 C -0.756 4.756 11 S 2.663 3.337 12 O -0.928 6.928 13 O -0.999 6.999 14 N -0.607 5.607 15 C -0.430 4.430 16 H 0.103 0.897 17 C -0.158 4.158 18 N -0.403 5.403 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.204 1.204 23 C -0.013 4.013 24 C -0.200 4.200 25 C -0.253 4.253 26 C 0.016 3.984 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.138 -9.367 2.438 11.461 hybrid contribution 0.026 -1.222 -0.043 1.223 sum -6.112 -10.589 2.394 12.458 Atomic orbital electron populations 1.23246 0.76349 1.03472 1.02649 1.86537 1.23298 1.32999 1.84729 1.21294 0.89173 0.81262 0.72514 1.90835 1.66739 1.35939 1.46071 1.19091 0.88457 0.95495 1.14266 1.21464 0.93976 0.97365 0.91954 1.21169 0.94186 0.97849 1.05387 1.19956 0.96752 0.91440 0.85315 1.22128 0.89498 1.06443 1.05508 1.32607 1.03578 1.26355 1.13065 1.10727 0.72148 0.74121 0.76753 1.93376 1.56594 1.85357 1.57463 1.93300 1.60127 1.58825 1.87642 1.52343 1.16851 1.66135 1.25377 1.18969 0.82431 1.27909 1.13642 0.89704 1.25727 0.99112 0.94862 0.96081 1.69806 1.33512 1.16691 1.20328 0.86209 0.80452 0.80534 0.79563 1.18371 1.19424 1.20423 1.21388 0.98971 0.98552 0.82358 1.23078 0.98462 0.98557 0.99936 1.23351 1.01028 0.96948 1.03991 1.21053 0.93219 0.96928 0.87195 0.88154 0.91860 0.91906 0.84784 0.85094 0.87872 0.91842 0.85578 0.90733 0.86339 0.87281 0.89789 0.89821 0.89024 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.89 9.82 -40.54 -0.40 -5.29 16 3 C 0.51 8.66 7.90 34.61 0.27 8.94 16 4 O -0.51 -9.78 16.14 -19.24 -0.31 -10.09 16 5 C -0.17 -3.04 5.87 -104.98 -0.62 -3.66 16 6 C -0.03 -0.44 9.62 -39.17 -0.38 -0.82 16 7 C -0.17 -2.61 9.68 -39.64 -0.38 -2.99 16 8 C 0.07 1.25 5.88 -104.53 -0.61 0.64 16 9 C -0.18 -3.34 7.26 36.01 0.26 -3.08 16 10 C -0.68 -14.50 5.90 -39.65 -0.23 -14.73 16 11 S 2.56 62.72 4.95 -107.50 -0.53 62.19 16 12 O -0.94 -24.99 11.72 -57.17 -0.67 -25.66 16 13 O -1.01 -26.86 15.75 -57.17 -0.90 -27.76 16 14 N -0.79 -17.87 3.03 -53.43 -0.16 -18.03 16 15 C -0.28 -6.29 4.53 -15.06 -0.07 -6.36 16 16 H 0.09 1.76 7.57 -52.49 -0.40 1.36 16 17 C 0.06 1.44 3.34 -17.43 -0.06 1.38 16 18 N -0.77 -19.82 11.52 55.49 0.64 -19.19 16 19 Si 0.91 18.08 28.03 -169.99 -4.76 13.32 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 C 0.10 1.96 6.38 -67.93 -0.43 1.53 16 24 C -0.16 -2.79 9.84 -26.69 -0.26 -3.05 16 25 C -0.21 -3.60 10.29 -26.70 -0.27 -3.87 16 26 C 0.04 0.72 9.09 -39.17 -0.36 0.36 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.13 1.60 7.61 -52.48 -0.40 1.20 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.10 1.83 6.61 -51.93 -0.34 1.48 16 33 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.13 2.75 2.82 -51.93 -0.15 2.60 16 35 H 0.28 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.12 2.45 7.39 -51.93 -0.38 2.06 16 37 H 0.11 1.97 6.99 -51.93 -0.36 1.60 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.15 3.12 6.92 -52.49 -0.36 2.76 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -30.56 347.64 -8.85 -39.41 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.91 Total: 10.16 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -2.08 Total: -24.29 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.48 Total: -37.22 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -2.28 Total: -68.80 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -4.76 Total: 13.32 kcal Atomic # 16 Polarization: 62.72 SS G_CDS: -0.53 Total: 62.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.56 -8.85 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.005 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds