Wall clock time and date at job start Tue Mar 31 2020 22:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34716 * 117.00135 * 2 1 4 4 O 1.21472 * 119.99610 * 0.02562 * 3 2 1 5 5 C 1.47726 * 120.00035 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.14704 * 0.02562 * 5 3 2 7 7 C 1.37918 * 119.84767 * 179.97438 * 6 5 3 8 8 C 1.38393 * 120.14746 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.84598 * 179.97438 * 8 7 6 10 10 C 1.38340 * 120.30354 * 0.02562 * 8 7 6 11 11 S 1.76205 * 119.92436 * 180.27594 * 10 8 7 12 12 O 1.42101 * 106.40552 * 48.25951 * 11 10 8 13 13 O 1.42099 * 106.40066 * 181.18221 * 11 10 8 14 14 N 1.65605 * 107.21507 * 294.71720 * 11 10 8 15 15 C 1.36939 * 119.99588 * 90.00584 * 14 11 10 16 16 H 1.08001 * 119.99226 * 230.00817 * 15 14 11 17 17 C 1.38809 * 120.00242 * 50.00303 * 15 14 11 18 18 N 1.31616 * 120.00134 * 23.10632 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 203.10315 * 17 15 14 20 20 H 1.48498 * 109.47354 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47268 * 120.00561 * 19 17 15 22 22 H 1.48505 * 109.47262 * 239.99898 * 19 17 15 23 23 C 1.46500 * 120.00074 * 269.99985 * 14 11 10 24 24 C 1.53002 * 117.49695 * 187.82964 * 23 14 11 25 25 C 1.52997 * 117.49675 * 119.17327 * 23 14 11 26 26 C 1.37960 * 120.15327 * 359.97438 * 10 8 7 27 27 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46746 * 299.99769 * 1 2 3 29 29 H 1.09001 * 109.47086 * 59.99297 * 1 2 3 30 30 H 1.08007 * 120.08168 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92908 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47381 * 269.99684 * 9 8 7 33 33 H 1.08997 * 109.47400 * 30.00029 * 9 8 7 34 34 H 1.09001 * 109.46883 * 150.00118 * 9 8 7 35 35 H 0.96999 * 119.99945 * 174.17609 * 18 17 15 36 36 H 1.08997 * 115.54939 * 333.49964 * 23 14 11 37 37 H 1.09004 * 117.49661 * 359.97438 * 24 23 14 38 38 H 1.08994 * 117.49671 * 145.01997 * 24 23 14 39 39 H 1.09003 * 117.49323 * 214.98184 * 25 23 14 40 40 H 1.09003 * 117.50070 * 359.97438 * 25 23 14 41 41 H 1.07998 * 120.07947 * 179.97438 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3024 0.1084 -0.0017 7 6 5.6793 0.1877 -0.0027 8 6 6.3044 1.4225 -0.0022 9 6 7.8094 1.5013 -0.0028 10 6 5.5540 2.5847 0.0000 11 16 6.3602 4.1515 -0.0067 12 8 7.3454 4.0915 -1.0290 13 8 5.3321 5.1319 0.0253 14 7 7.1802 4.2869 1.4257 15 6 8.4745 3.8493 1.5177 16 1 8.7672 3.1955 2.3259 17 6 9.4101 4.2460 0.5721 18 7 9.2200 5.3498 -0.1190 19 14 10.9391 3.2131 0.2807 20 1 10.9165 2.0309 1.1790 21 1 10.9687 2.7606 -1.1334 22 1 12.1481 4.0273 0.5652 23 6 6.5209 4.8749 2.5944 24 6 7.3812 5.1413 3.8312 25 6 6.3673 3.9946 3.8362 26 6 4.1760 2.5198 0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8159 -0.8559 -0.0025 31 1 6.2712 -0.7157 -0.0040 32 1 8.1727 1.5197 1.0248 33 1 8.2185 0.6319 -0.5173 34 1 8.1254 2.4094 -0.5161 35 1 9.9116 5.6722 -0.7179 36 1 5.7204 5.5818 2.3764 37 1 8.4377 4.8786 3.7755 38 1 7.1464 6.0232 4.4272 39 1 5.4658 4.1225 4.4354 40 1 6.7564 2.9777 3.7836 41 1 3.5913 3.4279 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063518887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:02 Heat of formation + Delta-G solvation = -104.912631 kcal Electronic energy + Delta-G solvation = -28608.736608 eV Core-core repulsion = 24581.904495 eV Total energy + Delta-G solvation = -4026.832113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71860 -40.00701 -38.80260 -37.81611 -37.57211 -36.15148 -35.12456 -34.00578 -32.42650 -32.24854 -29.48670 -27.85997 -26.73944 -24.21707 -23.92580 -22.98496 -22.21381 -21.99290 -20.72188 -19.69629 -18.51384 -18.18951 -17.69373 -17.49634 -17.16103 -16.79289 -16.47636 -16.41363 -15.88176 -15.42394 -15.17594 -15.02778 -14.79001 -14.55163 -14.36841 -14.05857 -13.56025 -13.47317 -13.22324 -13.08560 -13.03644 -12.97655 -12.72501 -12.58644 -12.49746 -12.34035 -12.12571 -12.01359 -11.90692 -11.87127 -11.80204 -11.60709 -11.12030 -10.95101 -10.52138 -10.33102 -9.89822 -9.28935 -8.41134 -6.05932 -0.48441 -0.08027 0.15934 1.30021 1.53359 1.54572 1.57502 1.68455 2.32775 2.47788 2.82969 3.03039 3.21672 3.46906 3.57508 3.69840 3.86076 4.00944 4.09964 4.19505 4.27790 4.28944 4.30642 4.41879 4.43388 4.54707 4.65076 4.69672 4.80201 4.87000 4.96090 4.99401 5.01964 5.06193 5.19140 5.28009 5.33973 5.48641 5.55900 5.59450 5.80104 5.81965 6.30065 6.53973 7.01710 7.47077 8.64426 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.004514 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.218956 B = 6201.864462 C = 6779.578701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.516 3.484 4 O -0.542 6.542 5 C -0.178 4.178 6 C -0.010 4.010 7 C -0.151 4.151 8 C 0.053 3.947 9 C -0.183 4.183 10 C -0.700 4.700 11 S 2.547 3.453 12 O -0.975 6.975 13 O -1.053 7.053 14 N -0.791 5.791 15 C -0.265 4.265 16 H 0.107 0.893 17 C 0.023 3.977 18 N -0.815 5.815 19 Si 0.957 3.043 20 H -0.223 1.223 21 H -0.284 1.284 22 H -0.276 1.276 23 C 0.051 3.949 24 C -0.146 4.146 25 C -0.185 4.185 26 C 0.010 3.990 27 H 0.144 0.856 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.279 0.721 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 -14.800 5.341 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.363 3.637 4 O -0.434 6.434 5 C -0.180 4.180 6 C -0.027 4.027 7 C -0.169 4.169 8 C 0.051 3.949 9 C -0.239 4.239 10 C -0.779 4.779 11 S 2.652 3.348 12 O -0.963 6.963 13 O -1.043 7.043 14 N -0.613 5.613 15 C -0.414 4.414 16 H 0.124 0.876 17 C -0.192 4.192 18 N -0.452 5.452 19 Si 0.778 3.222 20 H -0.145 1.145 21 H -0.209 1.209 22 H -0.202 1.202 23 C -0.057 4.057 24 C -0.185 4.185 25 C -0.225 4.225 26 C -0.010 4.010 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.196 0.804 31 H 0.196 0.804 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.719 -13.871 4.312 15.611 hybrid contribution -0.219 0.107 -0.598 0.646 sum -5.938 -13.764 3.714 15.444 Atomic orbital electron populations 1.23663 0.73995 1.06282 1.02618 1.86511 1.25445 1.30637 1.83835 1.21217 0.88949 0.81776 0.71793 1.90823 1.67398 1.37392 1.47743 1.19232 0.89392 0.95364 1.13969 1.21938 0.93817 0.97892 0.89092 1.21634 0.94654 0.97912 1.02738 1.20160 0.96931 0.91919 0.85859 1.22096 0.89509 1.06313 1.05949 1.32100 1.03948 1.26054 1.15803 1.11275 0.71603 0.74696 0.77212 1.93319 1.57512 1.86291 1.59180 1.93212 1.61420 1.61392 1.88258 1.52247 1.16914 1.66465 1.25636 1.19406 0.81751 1.26986 1.13268 0.87553 1.26632 1.01951 0.95149 0.95489 1.69923 1.34662 1.19026 1.21566 0.85461 0.77048 0.80447 0.79224 1.14463 1.20944 1.20187 1.21544 1.00436 1.00892 0.82866 1.23169 0.98045 0.99794 0.97483 1.23389 1.01618 0.96740 1.00725 1.20870 0.93088 0.97452 0.89556 0.83836 0.91911 0.92097 0.80373 0.80380 0.87106 0.88428 0.88975 0.91071 0.88270 0.87718 0.87465 0.87527 0.88479 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.50 9.82 -56.26 -0.55 -9.05 16 3 C 0.52 17.04 7.90 70.33 0.56 17.60 16 4 O -0.54 -21.42 16.14 19.93 0.32 -21.10 16 5 C -0.18 -6.14 5.87 -20.10 -0.12 -6.26 16 6 C -0.01 -0.25 9.62 22.53 0.22 -0.03 16 7 C -0.15 -4.06 9.68 22.23 0.22 -3.85 16 8 C 0.05 1.90 5.88 -19.80 -0.12 1.78 16 9 C -0.18 -6.41 7.26 71.24 0.52 -5.89 16 10 C -0.70 -30.67 5.90 22.23 0.13 -30.53 16 11 S 2.55 132.37 4.95 -56.49 -0.28 132.10 16 12 O -0.97 -55.04 11.72 -128.00 -1.50 -56.54 16 13 O -1.05 -61.26 15.75 -128.00 -2.02 -63.28 16 14 N -0.79 -37.03 3.03 -322.94 -0.98 -38.01 16 15 C -0.26 -11.75 4.53 84.03 0.38 -11.36 16 16 H 0.11 4.16 7.57 -2.91 -0.02 4.14 16 17 C 0.02 1.09 3.34 84.86 0.28 1.38 16 18 N -0.82 -43.82 11.52 21.65 0.25 -43.57 16 19 Si 0.96 36.04 28.03 68.60 1.92 37.97 16 20 H -0.22 -7.02 7.11 99.48 0.71 -6.31 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -10.23 7.11 99.48 0.71 -9.52 16 23 C 0.05 2.12 6.38 44.99 0.29 2.41 16 24 C -0.15 -4.86 9.84 30.62 0.30 -4.56 16 25 C -0.19 -5.93 10.29 30.62 0.31 -5.62 16 26 C 0.01 0.42 9.09 22.53 0.20 0.63 16 27 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.18 3.13 7.61 -2.91 -0.02 3.11 16 31 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.11 3.61 6.61 -2.39 -0.02 3.59 16 33 H 0.10 2.65 8.08 -2.39 -0.02 2.63 16 34 H 0.09 4.01 2.82 -2.39 -0.01 4.00 16 35 H 0.28 14.28 8.32 -92.71 -0.77 13.51 16 36 H 0.10 4.41 7.39 -2.39 -0.02 4.39 16 37 H 0.10 3.59 6.99 -2.38 -0.02 3.58 16 38 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.12 5.51 6.92 -2.91 -0.02 5.49 16 Total: -1.00 -73.35 347.64 2.61 -70.74 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 1.07 Total: 33.39 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 4.37 Total: -42.65 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -0.73 Total: -81.58 kcal Atomic # 8 Polarization: -146.22 SS G_CDS: -3.75 Total: -149.97 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 1.92 Total: 37.97 kcal Atomic # 16 Polarization: 132.37 SS G_CDS: -0.28 Total: 132.10 kcal Total: -73.35 2.61 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.169 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds