Wall clock time and date at job start Tue Mar 31 2020 22:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34716 * 117.00316 * 2 1 4 4 O 1.21473 * 119.99307 * 0.02562 * 3 2 1 5 5 C 1.47725 * 120.00237 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.14974 * 355.18449 * 5 3 2 7 7 C 1.37918 * 119.84541 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.15035 * 359.97438 * 7 6 5 9 9 C 1.38346 * 120.30629 * 0.28349 * 8 7 6 10 10 S 1.76196 * 119.92796 * 179.69885 * 9 8 7 11 11 O 1.42100 * 106.40124 * 357.66283 * 10 9 8 12 12 O 1.42099 * 106.40427 * 130.58264 * 10 9 8 13 13 N 1.65605 * 107.21861 * 244.12461 * 10 9 8 14 14 C 1.36943 * 119.99881 * 83.96599 * 13 10 9 15 15 H 1.07991 * 119.99511 * 229.18638 * 14 13 10 16 16 C 1.38805 * 119.99983 * 49.18802 * 14 13 10 17 17 N 1.31619 * 120.00337 * 26.91388 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 206.91476 * 16 14 13 19 19 H 1.48497 * 109.47055 * 59.99985 * 18 16 14 20 20 H 1.48497 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46841 * 300.00167 * 18 16 14 22 22 C 1.46496 * 119.99710 * 263.96691 * 13 10 9 23 23 C 1.53002 * 117.49691 * 195.31181 * 22 13 10 24 24 C 1.52997 * 59.99920 * 252.51213 * 23 22 13 25 25 C 1.37967 * 120.14583 * 359.44133 * 9 8 7 26 26 C 1.50707 * 120.07607 * 180.28238 * 25 9 8 27 27 H 1.08995 * 109.47005 * 299.99783 * 1 2 3 28 28 H 1.08997 * 109.47151 * 59.99970 * 1 2 3 29 29 H 1.08996 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.07325 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.92406 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.84971 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00268 * 184.90824 * 17 16 14 34 34 H 1.08998 * 115.55043 * 341.02021 * 22 13 10 35 35 H 1.09002 * 117.49739 * 0.02562 * 23 22 13 36 36 H 1.08997 * 117.50000 * 145.02089 * 23 22 13 37 37 H 1.09010 * 117.49644 * 252.51077 * 24 23 22 38 38 H 1.09002 * 117.50365 * 107.49321 * 24 23 22 39 39 H 1.09004 * 109.46847 * 264.21998 * 26 25 9 40 40 H 1.08998 * 109.46989 * 24.21571 * 26 25 9 41 41 H 1.08999 * 109.47045 * 144.21498 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3023 0.1126 0.1025 7 6 5.6791 0.1921 0.1029 8 6 6.3044 1.4226 0.0022 9 6 5.5542 2.5810 -0.0937 10 16 6.3606 4.1431 -0.2136 11 8 7.7550 3.8823 -0.1298 12 8 5.7612 4.8211 -1.3091 13 7 5.9638 5.0050 1.1436 14 6 6.6716 4.8228 2.3017 15 1 6.1502 4.6535 3.2321 16 6 8.0591 4.8558 2.2796 17 7 8.6863 5.5500 1.3539 18 14 9.0363 3.9148 3.5638 19 1 8.7103 2.4689 3.4724 20 1 10.4884 4.1105 3.3223 21 1 8.6870 4.4164 4.9172 22 6 4.8556 5.9624 1.1053 23 6 4.7580 6.9761 2.2472 24 6 3.7609 5.8186 2.1644 25 6 4.1761 2.5155 -0.1011 26 6 3.3606 3.7780 -0.2120 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.8155 -0.8481 0.1816 31 1 6.2707 -0.7079 0.1821 32 1 7.3829 1.4792 0.0026 33 1 9.6538 5.5162 1.2944 34 1 4.5540 6.2929 0.1113 35 1 5.5186 6.9309 3.0267 36 1 4.3922 7.9738 2.0046 37 1 2.7390 6.0549 1.8673 38 1 3.8651 5.0116 2.8897 39 1 3.0675 4.1099 0.7840 40 1 3.9559 4.5540 -0.6931 41 1 2.4685 3.5831 -0.8073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066576648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:07 Heat of formation + Delta-G solvation = -78.964103 kcal Electronic energy + Delta-G solvation = -28949.334377 eV Core-core repulsion = 24923.627477 eV Total energy + Delta-G solvation = -4025.706901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.56113 -38.60100 -37.30315 -36.42419 -35.84762 -34.23243 -33.33165 -32.33567 -31.36376 -30.66840 -27.95347 -26.64909 -24.96819 -23.76200 -22.14867 -21.48475 -20.73370 -20.51358 -18.95706 -18.19273 -16.99649 -16.54846 -16.35952 -16.02089 -15.64132 -15.53579 -15.11772 -14.91202 -14.20192 -13.98454 -13.83624 -13.80795 -13.34149 -12.97362 -12.81077 -12.43153 -12.24885 -11.99178 -11.87944 -11.75895 -11.66615 -11.48525 -11.29919 -11.08193 -10.84959 -10.82495 -10.62482 -10.49478 -10.37871 -10.32253 -10.00045 -9.95538 -9.49882 -9.35014 -8.94658 -8.65298 -8.53477 -7.59014 -6.56028 -4.22270 0.86949 1.39038 1.88362 2.63924 2.70207 3.18962 3.25447 3.26324 3.82712 4.08985 4.49973 4.71468 4.76894 4.84155 4.98445 5.00377 5.06945 5.09508 5.22557 5.34783 5.42538 5.49584 5.71786 5.76902 5.84207 5.86535 5.95801 6.00962 6.14499 6.27027 6.32686 6.32975 6.39256 6.46121 6.55168 6.73122 6.74727 6.82213 7.01910 7.12034 7.35000 7.46775 7.82269 8.15579 8.82856 9.25016 10.46177 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.005083 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.872333 B = 5507.037982 C = 6198.716172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.510 3.490 4 O -0.498 6.498 5 C -0.167 4.167 6 C -0.031 4.031 7 C -0.169 4.169 8 C 0.012 3.988 9 C -0.672 4.672 10 S 2.560 3.440 11 O -0.944 6.944 12 O -1.010 7.010 13 N -0.783 5.783 14 C -0.281 4.281 15 H 0.083 0.917 16 C 0.061 3.939 17 N -0.760 5.760 18 Si 0.914 3.086 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.271 1.271 22 C 0.095 3.905 23 C -0.164 4.164 24 C -0.212 4.212 25 C 0.083 3.917 26 C -0.180 4.180 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.281 0.719 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -8.176 0.746 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.169 4.169 6 C -0.050 4.050 7 C -0.188 4.188 8 C -0.007 4.007 9 C -0.748 4.748 10 S 2.660 3.340 11 O -0.932 6.932 12 O -0.999 6.999 13 N -0.604 5.604 14 C -0.429 4.429 15 H 0.100 0.900 16 C -0.159 4.159 17 N -0.394 5.394 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.197 1.197 22 C -0.014 4.014 23 C -0.204 4.204 24 C -0.252 4.252 25 C 0.082 3.918 26 C -0.235 4.235 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.152 -7.691 -0.298 11.958 hybrid contribution -0.099 -1.340 0.778 1.552 sum -9.251 -9.031 0.480 12.937 Atomic orbital electron populations 1.23228 0.76390 1.03425 1.02608 1.86541 1.23254 1.33157 1.84774 1.21256 0.89100 0.81219 0.72780 1.90786 1.66881 1.35296 1.45805 1.19004 0.88572 0.95177 1.14120 1.21462 0.94067 0.97287 0.92150 1.21206 0.94352 0.98251 1.04969 1.21280 1.00733 0.91112 0.87597 1.32531 1.03557 1.26000 1.12695 1.11035 0.74764 0.72854 0.75390 1.93427 1.29453 1.84457 1.85895 1.93256 1.78298 1.73176 1.55180 1.52281 1.39312 1.40370 1.28483 1.18924 0.87980 1.48673 0.87316 0.89955 1.25642 0.97724 0.94612 0.97925 1.69932 1.11019 1.27685 1.30795 0.86208 0.78696 0.80864 0.80332 1.19321 1.20536 1.19660 1.21465 0.90223 0.95057 0.94666 1.23129 1.01890 0.93048 1.02304 1.23356 0.94772 1.01957 1.05083 1.19636 0.92211 0.94122 0.85814 1.22124 1.01530 0.94865 1.05006 0.91870 0.91915 0.88262 0.84802 0.85147 0.84014 0.90805 0.85977 0.87357 0.89807 0.89583 0.88897 0.88493 0.88028 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.83 9.83 -40.53 -0.40 -5.23 16 3 C 0.51 8.36 7.84 34.61 0.27 8.63 16 4 O -0.50 -8.86 13.10 -19.25 -0.25 -9.11 16 5 C -0.17 -2.95 5.87 -104.98 -0.62 -3.56 16 6 C -0.03 -0.48 9.62 -39.17 -0.38 -0.85 16 7 C -0.17 -2.63 10.03 -39.64 -0.40 -3.03 16 8 C 0.01 0.22 9.54 -39.49 -0.38 -0.15 16 9 C -0.67 -14.38 5.90 -39.64 -0.23 -14.61 16 10 S 2.56 62.58 4.94 -107.50 -0.53 62.05 16 11 O -0.94 -25.28 12.99 -57.17 -0.74 -26.02 16 12 O -1.01 -25.98 14.29 -57.17 -0.82 -26.80 16 13 N -0.78 -18.31 3.02 -53.43 -0.16 -18.47 16 14 C -0.28 -6.73 7.54 -15.06 -0.11 -6.85 16 15 H 0.08 1.87 7.70 -52.49 -0.40 1.46 16 16 C 0.06 1.50 4.05 -17.43 -0.07 1.43 16 17 N -0.76 -20.16 11.53 55.49 0.64 -19.52 16 18 Si 0.91 19.31 29.63 -169.99 -5.04 14.27 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C 0.09 1.94 4.40 -67.93 -0.30 1.64 16 23 C -0.16 -2.95 9.87 -26.73 -0.26 -3.21 16 24 C -0.21 -3.65 7.94 -26.73 -0.21 -3.86 16 25 C 0.08 1.67 5.91 -104.21 -0.62 1.06 16 26 C -0.18 -3.49 7.11 36.01 0.26 -3.24 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.13 1.61 7.62 -52.49 -0.40 1.21 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.14 2.64 7.32 -52.48 -0.38 2.26 16 33 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 34 H 0.12 2.47 6.50 -51.93 -0.34 2.13 16 35 H 0.11 2.08 7.19 -51.93 -0.37 1.71 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.29 8.12 -51.92 -0.42 0.87 16 38 H 0.09 1.65 7.90 -51.93 -0.41 1.24 16 39 H 0.10 1.79 5.51 -51.93 -0.29 1.50 16 40 H 0.10 2.11 3.20 -51.93 -0.17 1.95 16 41 H 0.09 1.77 5.78 -51.93 -0.30 1.47 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -30.68 342.61 -8.85 -39.53 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.73 Total: 9.33 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -1.98 Total: -25.19 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.48 Total: -37.98 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -2.21 Total: -67.16 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.04 Total: 14.27 kcal Atomic # 16 Polarization: 62.58 SS G_CDS: -0.53 Total: 62.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.68 -8.85 -39.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066576648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds