Wall clock time and date at job start Tue Mar 31 2020 22:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34716 * 117.00316 * 2 1 4 4 O 1.21473 * 119.99307 * 0.02562 * 3 2 1 5 5 C 1.47725 * 120.00237 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.14974 * 355.18449 * 5 3 2 7 7 C 1.37918 * 119.84541 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.15035 * 359.97438 * 7 6 5 9 9 C 1.38346 * 120.30629 * 0.28349 * 8 7 6 10 10 S 1.76196 * 119.92796 * 179.69885 * 9 8 7 11 11 O 1.42100 * 106.40124 * 357.66283 * 10 9 8 12 12 O 1.42099 * 106.40427 * 130.58264 * 10 9 8 13 13 N 1.65605 * 107.21861 * 244.12461 * 10 9 8 14 14 C 1.36943 * 119.99881 * 83.96599 * 13 10 9 15 15 H 1.07991 * 119.99511 * 229.18638 * 14 13 10 16 16 C 1.38805 * 119.99983 * 49.18802 * 14 13 10 17 17 N 1.31619 * 120.00337 * 26.91388 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 206.91476 * 16 14 13 19 19 H 1.48497 * 109.47055 * 59.99985 * 18 16 14 20 20 H 1.48497 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46841 * 300.00167 * 18 16 14 22 22 C 1.46496 * 119.99710 * 263.96691 * 13 10 9 23 23 C 1.53002 * 117.49691 * 195.31181 * 22 13 10 24 24 C 1.52997 * 59.99920 * 252.51213 * 23 22 13 25 25 C 1.37967 * 120.14583 * 359.44133 * 9 8 7 26 26 C 1.50707 * 120.07607 * 180.28238 * 25 9 8 27 27 H 1.08995 * 109.47005 * 299.99783 * 1 2 3 28 28 H 1.08997 * 109.47151 * 59.99970 * 1 2 3 29 29 H 1.08996 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.07325 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.92406 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.84971 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00268 * 184.90824 * 17 16 14 34 34 H 1.08998 * 115.55043 * 341.02021 * 22 13 10 35 35 H 1.09002 * 117.49739 * 0.02562 * 23 22 13 36 36 H 1.08997 * 117.50000 * 145.02089 * 23 22 13 37 37 H 1.09010 * 117.49644 * 252.51077 * 24 23 22 38 38 H 1.09002 * 117.50365 * 107.49321 * 24 23 22 39 39 H 1.09004 * 109.46847 * 264.21998 * 26 25 9 40 40 H 1.08998 * 109.46989 * 24.21571 * 26 25 9 41 41 H 1.08999 * 109.47045 * 144.21498 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3023 0.1126 0.1025 7 6 5.6791 0.1921 0.1029 8 6 6.3044 1.4226 0.0022 9 6 5.5542 2.5810 -0.0937 10 16 6.3606 4.1431 -0.2136 11 8 7.7550 3.8823 -0.1298 12 8 5.7612 4.8211 -1.3091 13 7 5.9638 5.0050 1.1436 14 6 6.6716 4.8228 2.3017 15 1 6.1502 4.6535 3.2321 16 6 8.0591 4.8558 2.2796 17 7 8.6863 5.5500 1.3539 18 14 9.0363 3.9148 3.5638 19 1 8.7103 2.4689 3.4724 20 1 10.4884 4.1105 3.3223 21 1 8.6870 4.4164 4.9172 22 6 4.8556 5.9624 1.1053 23 6 4.7580 6.9761 2.2472 24 6 3.7609 5.8186 2.1644 25 6 4.1761 2.5155 -0.1011 26 6 3.3606 3.7780 -0.2120 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.8155 -0.8481 0.1816 31 1 6.2707 -0.7079 0.1821 32 1 7.3829 1.4792 0.0026 33 1 9.6538 5.5162 1.2944 34 1 4.5540 6.2929 0.1113 35 1 5.5186 6.9309 3.0267 36 1 4.3922 7.9738 2.0046 37 1 2.7390 6.0549 1.8673 38 1 3.8651 5.0116 2.8897 39 1 3.0675 4.1099 0.7840 40 1 3.9559 4.5540 -0.6931 41 1 2.4685 3.5831 -0.8073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066576648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:06 Heat of formation + Delta-G solvation = -97.779353 kcal Electronic energy + Delta-G solvation = -28950.150268 eV Core-core repulsion = 24923.627477 eV Total energy + Delta-G solvation = -4026.522791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78667 -39.91015 -38.89409 -37.83296 -37.54107 -36.20116 -35.08882 -33.75226 -32.73424 -32.43961 -28.98075 -27.93001 -26.77701 -25.07675 -23.55030 -22.89710 -22.28536 -21.89099 -20.75447 -19.60271 -18.37605 -18.10039 -17.69904 -17.46891 -17.20879 -17.02134 -16.63715 -16.55768 -15.81030 -15.54291 -15.21815 -15.00605 -14.88412 -14.35117 -14.11983 -14.01374 -13.64029 -13.42574 -13.28657 -13.22130 -13.13736 -12.99801 -12.81478 -12.71608 -12.56079 -12.38037 -12.16942 -12.10284 -12.05100 -11.81832 -11.63968 -11.48630 -11.04033 -10.89731 -10.46044 -10.37877 -9.91988 -9.32644 -8.39141 -6.10305 -0.48774 -0.06989 0.12151 1.34994 1.49534 1.55279 1.60498 1.61024 2.32897 2.46433 2.78597 2.98435 3.20773 3.42838 3.58010 3.68292 3.81977 3.97811 4.02762 4.20374 4.30622 4.31317 4.34961 4.40202 4.44888 4.54976 4.65858 4.66595 4.72107 4.77294 4.83015 4.95297 5.06530 5.11177 5.18446 5.24706 5.27824 5.41162 5.48789 5.56547 5.74862 5.81183 6.29651 6.63071 7.01989 7.43957 8.62509 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.005083 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.872333 B = 5507.037982 C = 6198.716172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.519 6.519 5 C -0.176 4.176 6 C -0.012 4.012 7 C -0.154 4.154 8 C -0.008 4.008 9 C -0.697 4.697 10 S 2.569 3.431 11 O -0.978 6.978 12 O -1.036 7.036 13 N -0.794 5.794 14 C -0.290 4.290 15 H 0.092 0.908 16 C 0.021 3.979 17 N -0.807 5.807 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.251 1.251 22 C 0.058 3.942 23 C -0.156 4.156 24 C -0.183 4.183 25 C 0.062 3.938 26 C -0.173 4.173 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.136 0.864 33 H 0.277 0.723 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.615 -11.124 2.045 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.360 3.640 4 O -0.410 6.410 5 C -0.177 4.177 6 C -0.030 4.030 7 C -0.173 4.173 8 C -0.027 4.027 9 C -0.778 4.778 10 S 2.673 3.327 11 O -0.966 6.966 12 O -1.026 7.026 13 N -0.617 5.617 14 C -0.436 4.436 15 H 0.109 0.891 16 C -0.194 4.194 17 N -0.443 5.443 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.175 1.175 22 C -0.050 4.050 23 C -0.196 4.196 24 C -0.223 4.223 25 C 0.061 3.939 26 C -0.229 4.229 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.195 0.805 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.246 -10.590 1.034 15.482 hybrid contribution 0.347 -0.578 0.290 0.734 sum -10.898 -11.168 1.324 15.660 Atomic orbital electron populations 1.23622 0.74009 1.06040 1.02727 1.86512 1.25419 1.31101 1.84010 1.21045 0.88627 0.81861 0.72434 1.90772 1.67190 1.36258 1.46766 1.19222 0.89902 0.95017 1.13607 1.21967 0.93817 0.98112 0.89134 1.21643 0.94966 0.98149 1.02500 1.21448 1.00629 0.92092 0.88579 1.31927 1.04465 1.25126 1.16292 1.09902 0.74101 0.73587 0.75126 1.93383 1.31527 1.85374 1.86353 1.93220 1.78596 1.74473 1.56268 1.52148 1.40437 1.41275 1.27810 1.19153 0.88125 1.48544 0.87763 0.89071 1.26487 0.98741 0.94883 0.99300 1.70025 1.10820 1.29989 1.33444 0.85437 0.77131 0.79697 0.79080 1.19069 1.20940 1.17530 1.21662 0.91359 0.96484 0.95500 1.23182 1.01696 0.94360 1.00342 1.23345 0.95260 1.01068 1.02629 1.19712 0.91759 0.95440 0.87029 1.22024 1.01197 0.94507 1.05132 0.91763 0.91895 0.84404 0.80526 0.80711 0.84614 0.91317 0.86730 0.88831 0.87184 0.86875 0.89291 0.87985 0.90017 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.14 9.83 -56.25 -0.55 -8.69 16 3 C 0.51 15.53 7.84 70.33 0.55 16.08 16 4 O -0.52 -17.61 13.10 19.92 0.26 -17.35 16 5 C -0.18 -5.80 5.87 -20.10 -0.12 -5.92 16 6 C -0.01 -0.33 9.62 22.54 0.22 -0.11 16 7 C -0.15 -4.26 10.03 22.23 0.22 -4.04 16 8 C -0.01 -0.31 9.54 22.33 0.21 -0.10 16 9 C -0.70 -30.20 5.90 22.23 0.13 -30.07 16 10 S 2.57 131.09 4.94 -56.49 -0.28 130.82 16 11 O -0.98 -54.97 12.99 -128.00 -1.66 -56.63 16 12 O -1.04 -56.21 14.29 -128.00 -1.83 -58.04 16 13 N -0.79 -38.36 3.02 -322.96 -0.98 -39.33 16 14 C -0.29 -14.17 7.54 84.03 0.63 -13.54 16 15 H 0.09 4.17 7.70 -2.92 -0.02 4.15 16 16 C 0.02 1.08 4.05 84.86 0.34 1.42 16 17 N -0.81 -44.77 11.53 21.65 0.25 -44.52 16 18 Si 0.96 39.79 29.63 68.60 2.03 41.83 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 C 0.06 2.42 4.40 44.99 0.20 2.62 16 23 C -0.16 -5.57 9.87 30.59 0.30 -5.27 16 24 C -0.18 -6.15 7.94 30.59 0.24 -5.91 16 25 C 0.06 2.47 5.91 -19.60 -0.12 2.35 16 26 C -0.17 -6.79 7.11 71.24 0.51 -6.29 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.18 3.16 7.62 -2.91 -0.02 3.13 16 31 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.14 5.13 7.32 -2.91 -0.02 5.11 16 33 H 0.28 14.75 8.32 -92.71 -0.77 13.98 16 34 H 0.12 4.86 6.50 -2.39 -0.02 4.85 16 35 H 0.09 3.62 7.19 -2.39 -0.02 3.61 16 36 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.11 3.17 8.12 -2.38 -0.02 3.15 16 38 H 0.09 3.07 7.90 -2.39 -0.02 3.05 16 39 H 0.10 3.76 5.51 -2.38 -0.01 3.75 16 40 H 0.08 3.54 3.20 -2.39 -0.01 3.53 16 41 H 0.10 3.69 5.78 -2.39 -0.01 3.68 16 Total: -1.00 -70.22 342.61 2.85 -67.37 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 1.08 Total: 31.65 kcal Atomic # 6 Polarization: -51.64 SS G_CDS: 4.53 Total: -47.11 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -0.73 Total: -83.85 kcal Atomic # 8 Polarization: -136.92 SS G_CDS: -3.78 Total: -140.71 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 131.09 SS G_CDS: -0.28 Total: 130.82 kcal Total: -70.22 2.85 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066576648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.406 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds