Wall clock time and date at job start Tue Mar 31 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48492 * 109.47543 * 270.00217 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00237 * 3 2 1 6 6 H 1.48505 * 109.47120 * 149.99928 * 3 2 1 7 7 C 1.38652 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50702 * 119.93331 * 180.29799 * 13 12 11 15 15 C 1.50697 * 109.47000 * 89.99640 * 14 13 12 16 16 O 1.34920 * 120.00161 * 180.02562 * 15 14 13 17 17 N 1.29042 * 120.00161 * 0.02562 * 15 14 13 18 18 S 1.65602 * 119.99911 * 179.97438 * 17 15 14 19 19 O 1.42109 * 104.27706 * 296.06730 * 18 17 15 20 20 O 1.42093 * 104.27793 * 63.92563 * 18 17 15 21 21 C 1.81403 * 104.44696 * 179.97438 * 18 17 15 22 22 C 1.53007 * 109.46842 * 179.97438 * 21 18 17 23 23 C 1.53000 * 117.49718 * 243.61912 * 22 21 18 24 24 C 1.52993 * 60.00087 * 252.51363 * 23 22 21 25 25 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 26 26 C 1.38100 * 120.06790 * 359.97438 * 25 13 12 27 27 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 30 30 H 1.08992 * 109.47246 * 209.99819 * 14 13 12 31 31 H 1.08999 * 109.46761 * 330.00230 * 14 13 12 32 32 H 0.96696 * 114.00762 * 180.02562 * 16 15 14 33 33 H 1.08992 * 109.47013 * 299.99978 * 21 18 17 34 34 H 1.09001 * 109.46878 * 60.00140 * 21 18 17 35 35 H 1.08992 * 115.54866 * 29.32769 * 22 21 18 36 36 H 1.09000 * 117.50087 * 0.02562 * 23 22 21 37 37 H 1.09000 * 117.49657 * 145.02219 * 23 22 21 38 38 H 1.08997 * 117.50085 * 252.51305 * 24 23 22 39 39 H 1.09004 * 117.49864 * 107.48966 * 24 23 22 40 40 H 1.07997 * 119.96346 * 180.02562 * 25 13 12 41 41 H 1.07996 * 120.03027 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0699 -3.5047 0.1045 11 6 1.4364 -4.7352 0.2200 12 6 2.1872 -5.8888 0.3330 13 6 3.5684 -5.8206 0.3203 14 6 4.3847 -7.0820 0.4372 15 6 4.6503 -7.6376 -0.9383 16 8 5.3673 -8.7716 -1.0809 17 7 4.1922 -7.0287 -1.9797 18 16 4.4847 -7.6389 -3.4911 19 8 5.8964 -7.5599 -3.6337 20 8 3.8167 -8.8929 -3.4981 21 6 3.6646 -6.4752 -4.6154 22 6 3.8658 -6.9350 -6.0609 23 6 4.6632 -6.0172 -6.9897 24 6 3.1482 -6.1476 -7.1590 25 6 4.2022 -4.5972 0.2002 26 6 3.4571 -3.4396 0.0920 27 1 -0.4851 0.8401 -0.0004 28 1 0.3578 -4.7895 0.2251 29 1 1.6951 -6.8456 0.4270 30 1 5.3318 -6.8578 0.9276 31 1 3.8356 -7.8168 1.0259 32 1 5.4855 -9.0494 -1.9995 33 1 2.5989 -6.4416 -4.3895 34 1 4.0948 -5.4819 -4.4873 35 1 3.9738 -8.0105 -6.2013 36 1 5.0448 -5.0860 -6.5709 37 1 5.2961 -6.4888 -7.7414 38 1 2.7844 -6.7051 -8.0221 39 1 2.5328 -5.3020 -6.8517 40 1 5.2810 -4.5473 0.1902 41 1 3.9526 -2.4846 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073538622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:31 Heat of formation + Delta-G solvation = -62.995363 kcal Electronic energy + Delta-G solvation = -26770.552488 eV Core-core repulsion = 22745.538044 eV Total energy + Delta-G solvation = -4025.014444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23382 -38.99490 -37.85048 -37.27617 -36.82992 -36.17147 -34.20277 -32.42475 -31.30356 -30.18247 -29.60666 -27.06984 -25.25986 -22.71890 -22.60482 -22.00346 -21.55744 -20.36035 -19.92297 -18.49919 -18.01313 -17.59563 -16.98923 -16.49497 -16.02283 -15.42128 -15.20234 -14.79339 -14.71426 -14.55013 -14.41883 -14.29658 -13.63670 -13.59712 -13.53542 -12.87025 -12.70996 -12.68377 -12.44875 -12.23801 -12.15841 -12.08729 -11.82697 -11.64436 -11.60597 -11.28273 -10.92727 -10.78826 -10.77559 -10.63514 -10.60058 -10.45707 -10.31226 -10.15609 -9.35816 -8.86158 -8.17735 -7.21700 -6.48200 -4.06884 0.00197 1.28494 2.10600 2.23180 2.61337 2.89172 3.11062 3.12000 3.12706 3.16294 3.34179 3.93950 4.11080 4.16147 4.52253 4.52979 4.60443 4.66366 4.93027 5.04642 5.06974 5.12257 5.19279 5.22977 5.27813 5.34286 5.46650 5.56645 5.58005 5.69790 5.75512 5.80677 5.81662 6.19192 6.38573 6.66937 6.87944 7.00393 7.07687 7.21309 7.32894 7.42110 7.79938 7.96998 8.97647 9.67744 10.69684 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003318 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.247112 B = 8437.673452 C =10068.860413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.193 4.193 12 C -0.052 4.052 13 C -0.171 4.171 14 C -0.007 4.007 15 C 0.501 3.499 16 O -0.500 6.500 17 N -0.968 5.968 18 S 2.525 3.475 19 O -0.978 6.978 20 O -0.981 6.981 21 C -0.542 4.542 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.159 4.159 25 C -0.049 4.049 26 C -0.234 4.234 27 H 0.270 0.730 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.392 0.608 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 -13.559 -6.606 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.105 3.895 11 C -0.212 4.212 12 C -0.071 4.071 13 C -0.172 4.172 14 C -0.046 4.046 15 C 0.283 3.717 16 O -0.295 6.295 17 N -0.832 5.832 18 S 2.625 3.375 19 O -0.967 6.967 20 O -0.970 6.970 21 C -0.674 4.674 22 C -0.183 4.183 23 C -0.207 4.207 24 C -0.197 4.197 25 C -0.067 4.067 26 C -0.254 4.254 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.665 -13.611 -6.447 17.376 hybrid contribution 0.466 0.733 -1.062 1.372 sum 9.131 -12.878 -7.509 17.482 Atomic orbital electron populations 1.70035 1.05967 1.27693 1.45976 1.25282 0.95822 0.98832 0.96536 0.85727 0.78961 0.80129 0.78710 1.19920 1.20251 1.19158 1.21331 0.91809 0.80808 1.52845 0.89017 1.83976 1.34449 1.11513 1.78123 1.19407 0.90298 0.87988 0.91784 1.20138 0.99475 0.90283 1.11346 1.20387 0.92600 0.96695 0.97387 1.18462 0.93078 0.91842 1.13785 1.19629 1.02455 0.96648 0.85880 1.24821 0.73979 0.76297 0.96644 1.85063 1.67983 1.40546 1.35860 1.73842 1.44085 1.49697 1.15624 1.07239 0.75564 0.76026 0.78624 1.93651 1.29408 1.86677 1.87007 1.93649 1.76293 1.40047 1.87031 1.29393 1.14974 1.16437 1.06569 1.21723 1.09192 0.98430 0.88918 1.23172 0.94571 1.01215 1.01791 1.23028 0.95218 1.02405 0.99043 1.20499 0.98121 0.91684 0.96438 1.21087 0.93751 0.98806 1.11725 0.92006 0.86587 0.87205 0.86811 0.86768 0.74972 0.83698 0.83962 0.86880 0.87837 0.87954 0.87995 0.87764 0.87655 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 9 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.17 -2.56 4.27 -104.57 -0.45 -3.00 16 14 C -0.01 -0.07 5.94 -29.04 -0.17 -0.25 16 15 C 0.50 6.38 7.80 -13.45 -0.10 6.27 16 16 O -0.50 -5.99 13.48 -30.95 -0.42 -6.40 16 17 N -0.97 -13.57 9.57 32.47 0.31 -13.26 16 18 S 2.53 33.14 4.25 -107.50 -0.46 32.68 16 19 O -0.98 -14.68 17.07 -61.32 -1.05 -15.73 16 20 O -0.98 -14.65 17.06 -61.34 -1.05 -15.69 16 21 C -0.54 -6.02 6.46 37.16 0.24 -5.78 16 22 C -0.16 -1.65 5.75 -90.62 -0.52 -2.17 16 23 C -0.17 -1.52 10.18 -26.73 -0.27 -1.79 16 24 C -0.16 -1.37 10.25 -26.74 -0.27 -1.64 16 25 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 26 C -0.23 -4.79 9.17 -39.40 -0.36 -5.15 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.39 4.58 5.36 53.47 0.29 4.87 16 33 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.14 1.49 7.87 -51.92 -0.41 1.09 16 35 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.10 0.90 8.03 -51.93 -0.42 0.49 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -34.29 367.94 -8.97 -43.27 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.46 Total: 9.61 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -3.14 Total: -26.14 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 1.07 Total: -37.26 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.51 Total: -42.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.46 Total: 32.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.29 -8.97 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073538622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.727 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds