Wall clock time and date at job start Tue Mar 31 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48492 * 109.47543 * 270.00217 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00237 * 3 2 1 6 6 H 1.48505 * 109.47120 * 149.99928 * 3 2 1 7 7 C 1.38652 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50702 * 119.93331 * 180.29799 * 13 12 11 15 15 C 1.50697 * 109.47000 * 89.99640 * 14 13 12 16 16 O 1.34920 * 120.00161 * 180.02562 * 15 14 13 17 17 N 1.29042 * 120.00161 * 0.02562 * 15 14 13 18 18 S 1.65602 * 119.99911 * 179.97438 * 17 15 14 19 19 O 1.42109 * 104.27706 * 296.06730 * 18 17 15 20 20 O 1.42093 * 104.27793 * 63.92563 * 18 17 15 21 21 C 1.81403 * 104.44696 * 179.97438 * 18 17 15 22 22 C 1.53007 * 109.46842 * 179.97438 * 21 18 17 23 23 C 1.53000 * 117.49718 * 243.61912 * 22 21 18 24 24 C 1.52993 * 60.00087 * 252.51363 * 23 22 21 25 25 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 26 26 C 1.38100 * 120.06790 * 359.97438 * 25 13 12 27 27 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 30 30 H 1.08992 * 109.47246 * 209.99819 * 14 13 12 31 31 H 1.08999 * 109.46761 * 330.00230 * 14 13 12 32 32 H 0.96696 * 114.00762 * 180.02562 * 16 15 14 33 33 H 1.08992 * 109.47013 * 299.99978 * 21 18 17 34 34 H 1.09001 * 109.46878 * 60.00140 * 21 18 17 35 35 H 1.08992 * 115.54866 * 29.32769 * 22 21 18 36 36 H 1.09000 * 117.50087 * 0.02562 * 23 22 21 37 37 H 1.09000 * 117.49657 * 145.02219 * 23 22 21 38 38 H 1.08997 * 117.50085 * 252.51305 * 24 23 22 39 39 H 1.09004 * 117.49864 * 107.48966 * 24 23 22 40 40 H 1.07997 * 119.96346 * 180.02562 * 25 13 12 41 41 H 1.07996 * 120.03027 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0699 -3.5047 0.1045 11 6 1.4364 -4.7352 0.2200 12 6 2.1872 -5.8888 0.3330 13 6 3.5684 -5.8206 0.3203 14 6 4.3847 -7.0820 0.4372 15 6 4.6503 -7.6376 -0.9383 16 8 5.3673 -8.7716 -1.0809 17 7 4.1922 -7.0287 -1.9797 18 16 4.4847 -7.6389 -3.4911 19 8 5.8964 -7.5599 -3.6337 20 8 3.8167 -8.8929 -3.4981 21 6 3.6646 -6.4752 -4.6154 22 6 3.8658 -6.9350 -6.0609 23 6 4.6632 -6.0172 -6.9897 24 6 3.1482 -6.1476 -7.1590 25 6 4.2022 -4.5972 0.2002 26 6 3.4571 -3.4396 0.0920 27 1 -0.4851 0.8401 -0.0004 28 1 0.3578 -4.7895 0.2251 29 1 1.6951 -6.8456 0.4270 30 1 5.3318 -6.8578 0.9276 31 1 3.8356 -7.8168 1.0259 32 1 5.4855 -9.0494 -1.9995 33 1 2.5989 -6.4416 -4.3895 34 1 4.0948 -5.4819 -4.4873 35 1 3.9738 -8.0105 -6.2013 36 1 5.0448 -5.0860 -6.5709 37 1 5.2961 -6.4888 -7.7414 38 1 2.7844 -6.7051 -8.0221 39 1 2.5328 -5.3020 -6.8517 40 1 5.2810 -4.5473 0.1902 41 1 3.9526 -2.4846 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073538622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:30 Heat of formation + Delta-G solvation = -88.776630 kcal Electronic energy + Delta-G solvation = -26771.670448 eV Core-core repulsion = 22745.538044 eV Total energy + Delta-G solvation = -4026.132404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26586 -40.56315 -38.58144 -38.38753 -38.36302 -37.26995 -35.31685 -34.25942 -32.60523 -31.67404 -30.45543 -28.47569 -27.09040 -23.73270 -23.53774 -23.38598 -22.50233 -21.57886 -20.94736 -19.77069 -19.51880 -18.76248 -18.54697 -17.53095 -16.89689 -16.55570 -16.42174 -16.12489 -15.97112 -15.84196 -15.63888 -15.41692 -15.22230 -14.98630 -14.50026 -14.38805 -14.11979 -13.77915 -13.59111 -13.55615 -13.34590 -13.06382 -12.94142 -12.90978 -12.51300 -12.46915 -12.39530 -12.24999 -12.22448 -12.09586 -11.75040 -11.34337 -11.21960 -11.09523 -11.09152 -10.75425 -9.64854 -8.84102 -8.43377 -6.10655 -0.98280 0.30781 0.70116 0.73600 1.37106 1.45022 1.53976 1.62442 1.85902 2.14019 2.20278 2.61114 2.91009 3.19727 3.25824 3.31907 3.59929 3.75633 3.84542 3.88755 3.93368 4.12900 4.18102 4.22719 4.29638 4.38203 4.50802 4.51368 4.68866 4.70102 4.76981 4.88646 4.90784 5.00524 5.15353 5.17124 5.21392 5.40085 5.65794 5.80587 5.86013 6.07747 6.09023 6.32598 7.02213 7.85210 8.79976 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003318 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.247112 B = 8437.673452 C =10068.860413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.015 2.985 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.102 0.898 9 O -0.235 6.235 10 C 0.117 3.883 11 C -0.206 4.206 12 C -0.046 4.046 13 C -0.139 4.139 14 C -0.008 4.008 15 C 0.500 3.500 16 O -0.494 6.494 17 N -0.991 5.991 18 S 2.534 3.466 19 O -1.000 7.000 20 O -1.002 7.002 21 C -0.535 4.535 22 C -0.186 4.186 23 C -0.173 4.173 24 C -0.153 4.153 25 C -0.048 4.048 26 C -0.244 4.244 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.394 0.606 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.335 -15.451 -6.476 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.067 3.933 11 C -0.225 4.225 12 C -0.064 4.064 13 C -0.140 4.140 14 C -0.047 4.047 15 C 0.283 3.717 16 O -0.288 6.288 17 N -0.856 5.856 18 S 2.636 3.364 19 O -0.989 6.989 20 O -0.992 6.992 21 C -0.669 4.669 22 C -0.205 4.205 23 C -0.209 4.209 24 C -0.191 4.191 25 C -0.066 4.066 26 C -0.263 4.263 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.158 0.842 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.142 -15.583 -6.295 20.164 hybrid contribution -0.156 0.927 -1.098 1.445 sum 10.986 -14.655 -7.393 19.752 Atomic orbital electron populations 1.70183 1.07993 1.28632 1.49230 1.26524 0.96779 1.02634 0.96080 0.84632 0.77898 0.74847 0.79147 1.18998 1.19765 1.17584 1.21800 0.92474 0.81491 1.52829 0.88096 1.83938 1.36077 1.12656 1.81542 1.19957 0.91652 0.87817 0.93883 1.20384 0.99733 0.90660 1.11738 1.20826 0.93273 0.96779 0.95493 1.18933 0.93041 0.93279 1.08769 1.19881 1.04077 0.95109 0.85617 1.25057 0.73506 0.76291 0.96857 1.85042 1.67646 1.40122 1.36021 1.73932 1.45155 1.50336 1.16210 1.06923 0.74971 0.75889 0.78621 1.93614 1.30892 1.87098 1.87338 1.93614 1.76507 1.41661 1.87381 1.29340 1.14926 1.15785 1.06825 1.21878 1.11017 0.99112 0.88542 1.23319 0.95085 1.00905 1.01625 1.23145 0.95144 1.02039 0.98810 1.20886 0.99726 0.90911 0.95074 1.21176 0.92980 0.99996 1.12173 0.91986 0.87338 0.83439 0.83098 0.82868 0.74747 0.83207 0.83579 0.86326 0.87978 0.86381 0.86218 0.87986 0.84248 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.09 13.67 21.61 0.30 -55.80 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 3 Si 1.02 42.29 29.55 68.60 2.03 44.32 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.41 -23.43 9.49 67.92 0.64 -22.78 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 9 O -0.24 -13.87 9.76 -22.74 -0.22 -14.10 16 10 C 0.12 5.58 6.65 22.58 0.15 5.73 16 11 C -0.21 -8.24 9.99 22.39 0.22 -8.02 16 12 C -0.05 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.14 -3.62 4.27 -19.83 -0.08 -3.70 16 14 C -0.01 -0.13 5.94 29.10 0.17 0.04 16 15 C 0.50 10.71 7.80 88.52 0.69 11.40 16 16 O -0.49 -10.07 13.48 -68.06 -0.92 -10.99 16 17 N -0.99 -25.11 9.57 -166.06 -1.59 -26.70 16 18 S 2.53 62.75 4.25 -56.49 -0.24 62.51 16 19 O -1.00 -28.63 17.07 -124.03 -2.12 -30.74 16 20 O -1.00 -28.56 17.06 -124.02 -2.12 -30.67 16 21 C -0.53 -11.36 6.46 71.98 0.46 -10.89 16 22 C -0.19 -3.52 5.75 -10.79 -0.06 -3.58 16 23 C -0.17 -2.81 10.18 30.59 0.31 -2.50 16 24 C -0.15 -2.41 10.25 30.59 0.31 -2.09 16 25 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 26 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 27 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 28 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.15 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.15 1.47 8.08 -2.39 -0.02 1.45 16 32 H 0.39 8.29 5.36 -79.09 -0.42 7.87 16 33 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.15 2.96 7.87 -2.39 -0.02 2.94 16 35 H 0.12 2.07 8.06 -2.39 -0.02 2.05 16 36 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.11 4.84 5.64 -2.91 -0.02 4.83 16 Total: -1.00 -80.04 367.94 -0.30 -80.35 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.65 Total: 31.23 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 3.93 Total: -49.40 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.29 Total: -82.49 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -5.37 Total: -86.50 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 62.75 SS G_CDS: -0.24 Total: 62.51 kcal Total: -80.04 -0.30 -80.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073538622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.430 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds