Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34706 * 117.00000 * 2 1 4 4 O 1.21463 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99652 * 180.02562 * 3 2 1 6 6 C 1.39643 * 120.15257 * 353.94652 * 5 3 2 7 7 C 1.37924 * 119.84655 * 180.02562 * 6 5 3 8 8 S 1.76209 * 119.92156 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40310 * 336.46191 * 8 7 6 10 10 O 1.42101 * 106.39787 * 203.53835 * 8 7 6 11 11 N 1.65596 * 107.21419 * 90.00308 * 8 7 6 12 12 C 1.36939 * 120.00041 * 90.00241 * 11 8 7 13 13 H 1.08005 * 119.99606 * 227.05669 * 12 11 8 14 14 C 1.38810 * 120.00522 * 47.05500 * 12 11 8 15 15 N 1.31624 * 119.99541 * 28.36026 * 14 12 11 16 16 Si 1.86795 * 120.00442 * 208.36179 * 14 12 11 17 17 H 1.48500 * 109.47260 * 59.99743 * 16 14 12 18 18 H 1.48498 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46844 * 299.99655 * 16 14 12 20 20 C 1.46501 * 120.00124 * 269.72180 * 11 8 7 21 21 C 1.53000 * 117.50117 * 193.20898 * 20 11 8 22 22 C 1.53000 * 117.49936 * 124.54682 * 20 11 8 23 23 C 1.38386 * 120.15194 * 0.27831 * 7 6 5 24 24 C 1.38349 * 120.30227 * 359.44320 * 23 7 6 25 25 C 1.37965 * 120.14760 * 0.55635 * 24 23 7 26 26 C 1.50701 * 120.07448 * 179.69985 * 25 24 23 27 27 H 1.08993 * 109.47262 * 299.99854 * 1 2 3 28 28 H 1.09002 * 109.46900 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.07845 * 0.04549 * 6 5 3 31 31 H 0.96996 * 119.99886 * 184.90618 * 15 14 12 32 32 H 1.09003 * 115.54506 * 338.87610 * 20 11 8 33 33 H 1.09001 * 117.50029 * 359.97438 * 21 20 11 34 34 H 1.08997 * 117.49649 * 145.01731 * 21 20 11 35 35 H 1.08999 * 117.49804 * 214.98125 * 22 20 11 36 36 H 1.08999 * 117.49774 * 359.97438 * 22 20 11 37 37 H 1.08003 * 119.84773 * 179.72605 * 23 7 6 38 38 H 1.08000 * 119.92385 * 180.29881 * 24 23 7 39 39 H 1.08993 * 109.47281 * 263.85303 * 26 25 24 40 40 H 1.09005 * 109.46829 * 23.85359 * 26 25 24 41 41 H 1.08998 * 109.46878 * 143.84957 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1150 0.1262 7 6 5.6791 0.1945 0.1254 8 16 6.6442 -1.2711 0.2860 9 8 5.8154 -2.2287 0.9303 10 8 7.9066 -0.8661 0.7976 11 7 6.9214 -1.8452 -1.2423 12 6 8.0283 -1.4361 -1.9371 13 1 7.9334 -1.1172 -2.9646 14 6 9.2721 -1.4313 -1.3209 15 7 9.5285 -2.2817 -0.3495 16 14 10.5819 -0.2180 -1.8701 17 1 10.0830 1.1679 -1.6820 18 1 11.8110 -0.4164 -1.0607 19 1 10.8933 -0.4416 -3.3049 20 6 5.9858 -2.7955 -1.8487 21 6 6.4401 -3.5238 -3.1153 22 6 5.3796 -2.4234 -3.2034 23 6 6.3044 1.4231 0.0052 24 6 5.5543 2.5782 -0.1266 25 6 4.1762 2.5131 -0.1273 26 6 3.3608 3.7731 -0.2641 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8154 -0.8441 0.2243 31 1 10.3708 -2.2318 0.1289 32 1 5.3562 -3.3463 -1.1498 33 1 7.4350 -3.2955 -3.4976 34 1 6.1092 -4.5535 -3.2498 35 1 4.3514 -2.7297 -3.3959 36 1 5.6767 -1.4713 -3.6432 37 1 7.3829 1.4801 0.0096 38 1 6.0487 3.5333 -0.2248 39 1 3.0661 4.1243 0.7247 40 1 3.9569 4.5397 -0.7592 41 1 2.4697 3.5665 -0.8569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074967807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = -106.473391 kcal Electronic energy + Delta-G solvation = -28340.919334 eV Core-core repulsion = 24314.019541 eV Total energy + Delta-G solvation = -4026.899793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.82651 -39.93670 -38.77550 -37.70195 -37.62368 -36.18148 -35.06818 -33.86221 -32.69870 -32.44219 -29.00411 -27.99076 -26.80802 -25.06822 -23.14747 -22.98464 -22.31967 -22.11292 -20.76280 -19.61712 -18.57779 -18.11958 -17.67125 -17.51260 -17.20244 -16.97159 -16.58680 -16.23280 -15.91396 -15.47986 -15.12913 -15.05944 -14.98619 -14.58153 -14.07717 -14.01254 -13.61032 -13.35346 -13.21198 -13.17392 -13.10089 -12.93795 -12.91439 -12.81175 -12.56438 -12.45949 -12.29677 -12.10639 -12.04878 -11.84889 -11.67262 -11.51909 -11.17024 -10.97319 -10.43980 -10.25284 -10.10895 -9.35455 -8.40551 -6.07695 -0.52308 -0.13395 0.10980 1.30282 1.51903 1.57681 1.61825 1.63009 2.31959 2.42879 2.82547 2.99719 3.23018 3.41250 3.51938 3.71044 3.74391 3.91215 4.11839 4.22118 4.25759 4.29059 4.32210 4.35393 4.41691 4.51165 4.62218 4.66547 4.72953 4.77261 4.83669 4.90551 4.97218 5.09001 5.14793 5.20445 5.28426 5.40552 5.49170 5.57040 5.70638 5.80194 6.30408 6.56934 7.02964 7.44479 8.62097 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.004745 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.275862 B = 5899.500566 C = 6806.948065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.515 3.485 4 O -0.512 6.512 5 C -0.172 4.172 6 C 0.022 3.978 7 C -0.696 4.696 8 S 2.569 3.431 9 O -1.037 7.037 10 O -0.979 6.979 11 N -0.797 5.797 12 C -0.288 4.288 13 H 0.095 0.905 14 C 0.024 3.976 15 N -0.815 5.815 16 Si 0.965 3.035 17 H -0.261 1.261 18 H -0.288 1.288 19 H -0.251 1.251 20 C 0.053 3.947 21 C -0.155 4.155 22 C -0.182 4.182 23 C 0.004 3.996 24 C -0.148 4.148 25 C 0.013 3.987 26 C -0.120 4.120 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.277 0.723 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.173 0.827 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 7.411 -4.651 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.362 3.638 4 O -0.404 6.404 5 C -0.173 4.173 6 C 0.002 3.998 7 C -0.777 4.777 8 S 2.672 3.328 9 O -1.027 7.027 10 O -0.968 6.968 11 N -0.619 5.619 12 C -0.435 4.435 13 H 0.113 0.887 14 C -0.191 4.191 15 N -0.451 5.451 16 Si 0.787 3.213 17 H -0.186 1.186 18 H -0.213 1.213 19 H -0.175 1.175 20 C -0.056 4.056 21 C -0.195 4.195 22 C -0.222 4.222 23 C -0.015 4.015 24 C -0.167 4.167 25 C 0.013 3.987 26 C -0.176 4.176 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.190 0.810 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.562 7.274 -3.549 14.113 hybrid contribution 0.296 0.624 0.185 0.715 sum -11.266 7.898 -3.364 14.164 Atomic orbital electron populations 1.23641 0.73739 1.05967 1.03064 1.86592 1.25831 1.31937 1.83768 1.21015 0.88640 0.81731 0.72406 1.90737 1.67034 1.35578 1.47042 1.19225 0.89656 0.95116 1.13351 1.21125 0.91943 0.98567 0.88123 1.32128 1.07841 1.22139 1.15558 1.09770 0.72428 0.73639 0.76972 1.93260 1.70810 1.61694 1.76906 1.93379 1.40516 1.83304 1.79568 1.52256 1.27077 1.45974 1.36622 1.19182 0.82749 1.42552 0.98969 0.88730 1.26484 1.00070 0.96173 0.96379 1.70029 1.25426 1.29289 1.20354 0.85426 0.77143 0.79755 0.78953 1.18566 1.21324 1.17522 1.21646 0.96968 0.96732 0.90207 1.23147 0.99896 0.97208 0.99217 1.23355 0.98584 0.99951 1.00290 1.21337 1.00955 0.91237 0.87979 1.21497 0.92550 0.99659 1.02949 1.20550 0.94488 0.94440 0.89233 1.21203 0.99914 0.92491 1.03957 0.91413 0.91081 0.85153 0.84346 0.91317 0.86831 0.88791 0.87149 0.86777 0.89237 0.84483 0.80974 0.89594 0.88905 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.22 9.84 -56.16 -0.55 -10.77 16 3 C 0.52 15.82 7.83 70.33 0.55 16.37 16 4 O -0.51 -15.56 13.12 19.95 0.26 -15.30 16 5 C -0.17 -5.72 5.87 -20.10 -0.12 -5.84 16 6 C 0.02 0.83 9.09 22.53 0.20 1.04 16 7 C -0.70 -29.11 5.97 22.23 0.13 -28.98 16 8 S 2.57 128.51 5.47 -56.49 -0.31 128.20 16 9 O -1.04 -55.71 16.02 -128.00 -2.05 -57.76 16 10 O -0.98 -54.34 13.27 -128.00 -1.70 -56.04 16 11 N -0.80 -37.74 3.08 -322.93 -1.00 -38.73 16 12 C -0.29 -13.78 7.59 84.03 0.64 -13.14 16 13 H 0.10 4.18 7.82 -2.91 -0.02 4.16 16 14 C 0.02 1.19 3.88 84.86 0.33 1.52 16 15 N -0.81 -44.92 11.67 21.65 0.25 -44.67 16 16 Si 0.96 39.12 29.64 68.60 2.03 41.15 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 20 C 0.05 2.14 6.43 44.99 0.29 2.43 16 21 C -0.16 -5.34 9.86 30.62 0.30 -5.04 16 22 C -0.18 -5.84 10.18 30.62 0.31 -5.53 16 23 C 0.00 0.15 9.52 22.33 0.21 0.36 16 24 C -0.15 -4.31 9.66 22.23 0.21 -4.09 16 25 C 0.01 0.39 5.92 -19.60 -0.12 0.28 16 26 C -0.12 -2.68 8.75 71.24 0.62 -2.06 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.14 5.31 7.18 -2.91 -0.02 5.29 16 31 H 0.28 14.71 8.32 -92.71 -0.77 13.93 16 32 H 0.11 4.67 7.31 -2.39 -0.02 4.65 16 33 H 0.09 3.52 7.10 -2.39 -0.02 3.50 16 34 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.09 2.94 8.08 -2.39 -0.02 2.92 16 37 H 0.14 5.14 7.60 -2.91 -0.02 5.12 16 38 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.55 8.05 -2.38 -0.02 1.53 16 41 H 0.09 2.12 5.82 -2.39 -0.01 2.10 16 Total: -1.00 -68.29 358.71 2.77 -65.52 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.06 Total: 29.37 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 4.77 Total: -40.96 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -0.74 Total: -83.40 kcal Atomic # 8 Polarization: -135.83 SS G_CDS: -4.04 Total: -139.87 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: 128.51 SS G_CDS: -0.31 Total: 128.20 kcal Total: -68.29 2.77 -65.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074967807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.954 kcal (2) G-P(sol) polarization free energy of solvation -68.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds