Wall clock time and date at job start Tue Mar 31 2020 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99514 * 2 1 4 4 H 1.48499 * 109.47003 * 240.00018 * 3 2 1 5 5 H 1.48496 * 109.47393 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46783 * 120.00599 * 3 2 1 7 7 C 1.39941 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99859 * 197.84423 * 7 2 1 9 9 C 1.41396 * 120.00363 * 17.84426 * 7 2 1 10 10 C 1.40712 * 120.24423 * 204.38676 * 9 7 2 11 11 C 1.37621 * 119.74451 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24491 * 0.02562 * 11 10 9 13 13 S 1.76198 * 119.74802 * 179.97438 * 12 11 10 14 14 O 1.42107 * 106.40192 * 336.46066 * 13 12 11 15 15 O 1.42098 * 106.40467 * 203.53934 * 13 12 11 16 16 N 1.65606 * 107.21813 * 89.99908 * 13 12 11 17 17 C 1.46920 * 120.62963 * 90.00181 * 16 13 12 18 18 C 1.53194 * 108.77484 * 126.41532 * 17 16 13 19 19 C 1.53042 * 109.31709 * 54.63069 * 18 17 16 20 20 C 1.53043 * 109.53707 * 298.64147 * 19 18 17 21 21 H 1.09001 * 109.48906 * 301.37553 * 20 19 18 22 22 C 1.50700 * 109.49513 * 181.31448 * 20 19 18 23 23 O 1.20827 * 119.99549 * 239.99537 * 22 20 19 24 24 O 1.34228 * 120.00308 * 60.27018 * 22 20 19 25 25 C 1.46926 * 120.62840 * 270.02344 * 16 13 12 26 26 C 1.38636 * 120.50500 * 0.25249 * 12 11 10 27 27 C 1.37624 * 120.24393 * 359.44896 * 26 12 11 28 28 H 0.96997 * 120.00547 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.12908 * 0.04083 * 10 9 7 30 30 H 1.07994 * 119.87956 * 179.97438 * 11 10 9 31 31 H 1.08995 * 109.58981 * 6.62738 * 17 16 13 32 32 H 1.09003 * 109.58414 * 246.19506 * 17 16 13 33 33 H 1.08998 * 109.49827 * 294.67799 * 18 17 16 34 34 H 1.08994 * 109.52510 * 174.59925 * 18 17 16 35 35 H 1.08992 * 109.46052 * 178.61438 * 19 18 17 36 36 H 1.09005 * 109.44793 * 58.64587 * 19 18 17 37 37 H 0.96693 * 117.00399 * 179.71776 * 24 22 20 38 38 H 1.08998 * 109.58774 * 113.79873 * 25 16 13 39 39 H 1.09003 * 109.59144 * 353.37275 * 25 16 13 40 40 H 1.07996 * 119.87700 * 179.70745 * 26 12 11 41 41 H 1.07997 * 120.12234 * 180.27534 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 3.0958 1.6966 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1800 -4.8065 -0.2900 12 6 0.0668 -4.7502 -1.1145 13 16 -0.7497 -6.2394 -1.5839 14 8 0.2111 -7.2793 -1.4623 15 8 -1.4385 -5.9551 -2.7938 16 7 -1.9123 -6.5413 -0.4438 17 6 -3.2721 -6.0080 -0.6019 18 6 -4.2714 -7.1633 -0.4858 19 6 -4.0365 -7.9053 0.8320 20 6 -2.6212 -8.4874 0.8463 21 1 -2.4971 -9.1627 -0.0003 22 6 -2.4020 -9.2452 2.1304 23 8 -1.5207 -8.9107 2.8862 24 8 -3.1822 -10.2950 2.4318 25 6 -1.6033 -7.3471 0.7453 26 6 -0.4054 -3.5316 -1.5771 27 6 0.2212 -2.3618 -1.2124 28 1 -0.4851 0.8400 0.0004 29 1 2.6930 -3.6960 0.7247 30 1 1.5420 -5.7617 0.0605 31 1 -3.3689 -5.5382 -1.5806 32 1 -3.4699 -5.2740 0.1793 33 1 -4.1316 -7.8506 -1.3201 34 1 -5.2875 -6.7694 -0.5053 35 1 -4.7623 -8.7127 0.9285 36 1 -4.1521 -7.2115 1.6648 37 1 -3.0009 -10.7521 3.2643 38 1 -1.6649 -6.7223 1.6363 39 1 -0.5988 -7.7609 0.6554 40 1 -1.2705 -3.4999 -2.2227 41 1 -0.1510 -1.4133 -1.5703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:24 Heat of formation + Delta-G solvation = -181.751308 kcal Electronic energy + Delta-G solvation = -27538.705863 eV Core-core repulsion = 23508.541775 eV Total energy + Delta-G solvation = -4030.164088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53631 -39.39232 -39.12253 -38.24860 -37.10152 -36.82337 -35.81688 -33.68203 -32.34716 -32.07723 -31.30755 -27.63121 -26.00644 -25.57984 -23.28992 -23.00268 -22.62912 -21.31661 -19.88698 -19.44293 -19.08151 -18.72935 -18.25558 -17.42572 -17.25312 -16.86598 -16.71965 -15.87781 -15.68134 -15.49401 -15.16363 -15.03870 -14.83392 -14.53530 -14.41249 -14.12560 -13.97280 -13.78446 -13.60402 -13.14294 -13.08947 -12.98693 -12.91992 -12.90557 -12.60980 -12.59761 -12.52943 -12.06205 -12.02306 -11.92644 -11.60454 -11.52645 -11.37009 -11.32795 -11.22342 -10.01946 -9.78127 -9.56938 -8.88256 -6.66149 -0.40745 0.47171 1.03906 1.17584 1.35229 1.43653 1.49380 1.92514 2.11006 2.25390 2.51241 2.89824 3.40997 3.48548 3.54301 3.71719 3.92089 4.03998 4.21729 4.27474 4.28732 4.29979 4.49283 4.57415 4.74354 4.79919 4.84460 4.89704 4.94761 5.00040 5.08269 5.13841 5.19548 5.22658 5.38217 5.49964 5.56599 5.58815 5.65134 5.76783 5.91845 6.14051 6.47262 6.66791 6.79470 6.98986 8.06817 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003102 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.840047 B = 9025.505187 C = 9325.858232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.091 0.909 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.004 4.004 12 C -0.799 4.799 13 S 2.719 3.281 14 O -0.998 6.998 15 O -0.992 6.992 16 N -0.995 5.995 17 C 0.102 3.898 18 C -0.124 4.124 19 C -0.102 4.102 20 C -0.093 4.093 21 H 0.126 0.874 22 C 0.496 3.504 23 O -0.549 6.549 24 O -0.504 6.504 25 C 0.131 3.869 26 C -0.019 4.019 27 C -0.207 4.207 28 H 0.299 0.701 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.429 0.571 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -11.180 3.358 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.109 0.891 9 C 0.108 3.892 10 C -0.279 4.279 11 C -0.024 4.024 12 C -0.892 4.892 13 S 2.817 3.183 14 O -0.988 6.988 15 O -0.982 6.982 16 N -0.833 5.833 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.140 4.140 20 C -0.114 4.114 21 H 0.144 0.856 22 C 0.339 3.661 23 O -0.439 6.439 24 O -0.317 6.317 25 C 0.005 3.995 26 C -0.039 4.039 27 C -0.227 4.227 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.291 0.709 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.016 -11.282 2.475 15.961 hybrid contribution 0.985 1.121 1.096 1.852 sum -10.031 -10.162 3.571 14.718 Atomic orbital electron populations 1.69829 1.09286 1.31969 1.30543 1.26995 0.95624 1.05102 0.90715 0.85095 0.78829 0.74608 0.80398 1.18305 1.18589 1.17939 1.20214 0.98940 0.92177 1.38054 0.89142 1.18193 0.90748 0.93159 0.87132 1.21270 1.05227 0.92918 1.08438 1.20434 0.92199 0.97688 0.92076 1.29733 1.16599 1.17206 1.25680 1.00524 0.72069 0.73093 0.72606 1.93447 1.61964 1.56468 1.86955 1.93449 1.74559 1.86445 1.43788 1.57639 1.23342 1.64770 1.37537 1.21788 0.79667 0.97372 1.03417 1.21902 0.99838 0.96918 0.97597 1.21516 0.92350 1.01121 0.98989 1.21400 0.99634 0.96554 0.93836 0.85644 1.23285 0.77445 0.78053 0.87303 1.90757 1.33663 1.67572 1.51951 1.84468 1.57813 1.42400 1.47063 1.21205 0.98671 0.91671 0.87922 1.20460 0.96953 0.91630 0.94864 1.21362 1.00966 0.97166 1.03190 0.88940 0.87267 0.86120 0.89144 0.90431 0.90730 0.87224 0.87903 0.90781 0.70921 0.90524 0.89639 0.86379 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.09 10.95 21.82 0.24 -37.85 16 2 C 0.04 1.64 5.14 85.26 0.44 2.08 16 3 Si 0.99 34.68 29.60 68.60 2.03 36.71 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.47 -23.67 9.05 23.46 0.21 -23.46 16 8 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.11 5.87 5.57 -21.29 -0.12 5.75 16 10 C -0.26 -12.76 9.80 22.73 0.22 -12.53 16 11 C 0.00 -0.19 9.49 22.22 0.21 0.02 16 12 C -0.80 -35.80 6.00 22.46 0.13 -35.66 16 13 S 2.72 103.46 5.72 -56.49 -0.32 103.14 16 14 O -1.00 -41.35 15.85 -128.00 -2.03 -43.37 16 15 O -0.99 -40.35 15.84 -128.00 -2.03 -42.38 16 16 N -1.00 -29.37 3.29 -513.08 -1.69 -31.06 16 17 C 0.10 2.40 6.48 86.36 0.56 2.96 16 18 C -0.12 -1.96 6.08 30.67 0.19 -1.77 16 19 C -0.10 -1.52 5.11 30.62 0.16 -1.37 16 20 C -0.09 -1.88 2.78 -11.46 -0.03 -1.91 16 21 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 22 C 0.50 10.19 7.63 71.24 0.54 10.73 16 23 O -0.55 -15.51 16.68 21.96 0.37 -15.14 16 24 O -0.50 -6.65 13.31 -51.40 -0.68 -7.33 16 25 C 0.13 3.59 5.11 86.36 0.44 4.03 16 26 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 27 C -0.21 -10.69 8.70 22.73 0.20 -10.49 16 28 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 29 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 30 H 0.12 5.02 7.60 -2.91 -0.02 5.00 16 31 H 0.09 2.26 6.92 -2.39 -0.02 2.25 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.43 2.17 9.10 -74.06 -0.67 1.50 16 38 H 0.08 2.14 7.96 -2.39 -0.02 2.12 16 39 H 0.09 2.61 6.92 -2.39 -0.02 2.60 16 40 H 0.12 5.04 7.59 -2.91 -0.02 5.02 16 41 H 0.11 5.92 6.16 -2.91 -0.02 5.90 16 Total: -1.00 -69.23 354.28 -0.35 -69.58 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.40 Total: 30.03 kcal Atomic # 6 Polarization: -65.68 SS G_CDS: 3.36 Total: -62.31 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.45 Total: -68.91 kcal Atomic # 8 Polarization: -103.86 SS G_CDS: -4.37 Total: -108.23 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -0.32 Total: 103.14 kcal Total: -69.23 -0.35 -69.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.174 kcal (2) G-P(sol) polarization free energy of solvation -69.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds