Wall clock time and date at job start Tue Mar 31 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47254 * 2 1 4 4 S 1.65600 * 120.00128 * 307.22766 * 3 2 1 5 5 O 1.42098 * 106.40288 * 51.75868 * 4 3 2 6 6 O 1.42100 * 106.40667 * 184.68269 * 4 3 2 7 7 C 1.76210 * 107.21796 * 298.21883 * 4 3 2 8 8 C 1.38627 * 119.74729 * 275.47178 * 7 4 3 9 9 C 1.37622 * 120.24599 * 179.72401 * 8 7 4 10 10 C 1.40714 * 119.74267 * 0.56391 * 9 8 7 11 11 C 1.41399 * 120.24207 * 179.68353 * 10 9 8 12 12 H 1.08001 * 119.99606 * 209.05938 * 11 10 9 13 13 C 1.39942 * 119.99933 * 29.06377 * 11 10 9 14 14 N 1.30821 * 120.00244 * 10.63760 * 13 11 10 15 15 Si 1.86801 * 119.99980 * 190.64023 * 13 11 10 16 16 H 1.48502 * 109.47128 * 59.99339 * 15 13 11 17 17 H 1.48490 * 109.47363 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47146 * 300.00227 * 15 13 11 19 19 C 1.40719 * 119.51403 * 359.70838 * 10 9 8 20 20 C 1.37615 * 119.74081 * 0.02562 * 19 10 9 21 21 C 1.50698 * 109.47065 * 239.99770 * 2 1 3 22 22 O 1.20826 * 120.00066 * 335.00134 * 21 2 1 23 23 O 1.34231 * 120.00221 * 154.99917 * 21 2 1 24 24 C 1.53005 * 109.47293 * 120.00029 * 2 1 3 25 25 C 1.53003 * 117.49802 * 123.74371 * 24 2 1 26 26 C 1.53004 * 117.49546 * 55.08266 * 24 2 1 27 27 H 1.08997 * 109.47016 * 67.91490 * 1 2 3 28 28 H 1.08995 * 109.47014 * 187.91502 * 1 2 3 29 29 H 1.09002 * 109.47049 * 307.91845 * 1 2 3 30 30 H 0.96999 * 120.00507 * 127.50707 * 3 2 1 31 31 H 1.08000 * 119.88060 * 359.97298 * 8 7 4 32 32 H 1.08004 * 120.12979 * 180.27727 * 9 8 7 33 33 H 0.96999 * 119.99920 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.12596 * 179.97438 * 19 10 9 35 35 H 1.08001 * 119.87166 * 180.02562 * 20 19 10 36 36 H 0.96704 * 117.00559 * 180.02562 * 23 21 2 37 37 H 1.09000 * 115.54580 * 269.42017 * 24 2 1 38 38 H 1.08992 * 117.50044 * 0.02562 * 25 24 2 39 39 H 1.09003 * 117.49213 * 145.02248 * 25 24 2 40 40 H 1.08994 * 117.49783 * 214.98213 * 26 24 2 41 41 H 1.08997 * 117.49879 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 16 1.4764 2.4510 -1.1419 5 8 0.0571 2.3906 -1.1068 6 8 2.2082 3.6530 -0.9451 7 6 1.9623 1.8248 -2.7157 8 6 3.2322 2.0952 -3.2013 9 6 3.6244 1.6065 -4.4266 10 6 2.7267 0.8398 -5.1922 11 6 3.1163 0.3381 -6.4555 12 1 2.3755 0.1785 -7.2250 13 6 4.4618 0.0483 -6.7086 14 7 5.3254 0.0404 -5.7259 15 14 5.0248 -0.3274 -8.4497 16 1 4.7378 0.8375 -9.3249 17 1 6.4847 -0.5985 -8.4502 18 1 4.2992 -1.5191 -8.9583 19 6 1.4382 0.5764 -4.6917 20 6 1.0695 1.0706 -3.4614 21 6 2.0323 -0.7104 -1.2304 22 8 1.3396 -1.5363 -1.7763 23 8 3.2493 -0.4258 -1.7200 24 6 2.0401 -0.7213 1.2493 25 6 2.9863 -1.9060 1.0441 26 6 1.5431 -2.1475 1.4938 27 1 -0.3633 0.3864 -0.9522 28 1 -0.3633 -1.0178 0.1415 29 1 -0.3633 0.6316 0.8107 30 1 2.6622 1.6680 0.6664 31 1 3.9178 2.6883 -2.6142 32 1 4.6158 1.8146 -4.8012 33 1 6.2579 -0.1608 -5.9014 34 1 0.7411 -0.0106 -5.2712 35 1 0.0813 0.8694 -3.0750 36 1 3.5279 -0.9070 -2.5112 37 1 2.2061 -0.0896 2.1219 38 1 3.2458 -2.1712 0.0193 39 1 3.7748 -2.0538 1.7821 40 1 1.3828 -2.4543 2.5274 41 1 0.8532 -2.5721 0.7646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:32 Heat of formation + Delta-G solvation = -115.370156 kcal Electronic energy + Delta-G solvation = -29233.962991 eV Core-core repulsion = 25206.677406 eV Total energy + Delta-G solvation = -4027.285586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59643 -37.76932 -37.44693 -36.60293 -35.54784 -35.22595 -34.60591 -34.01368 -30.26112 -29.58622 -29.37412 -25.85041 -25.23788 -23.01775 -22.30505 -21.48912 -21.16166 -19.59088 -18.89449 -17.87523 -17.62948 -17.36535 -16.86577 -16.64904 -15.95508 -15.49862 -14.83077 -14.68125 -14.26651 -14.11609 -13.55330 -13.44592 -13.19417 -13.08125 -12.75840 -12.43362 -12.36514 -12.13420 -11.84343 -11.74870 -11.55863 -11.46567 -11.43245 -11.30290 -11.24651 -10.96161 -10.84884 -10.82450 -10.57628 -10.47148 -10.39823 -10.28266 -9.76632 -9.63899 -9.56037 -9.18510 -7.91891 -7.69933 -7.10423 -4.82511 1.13859 2.20820 2.51033 2.88735 2.88795 2.91465 2.94626 3.26712 3.44845 3.67022 3.73820 4.21552 4.37609 4.47605 4.66765 4.77504 4.97104 5.12943 5.20264 5.34776 5.47077 5.51389 5.62571 5.71614 5.85068 5.92480 6.00083 6.06371 6.11014 6.21562 6.49563 6.68547 6.70582 6.90340 7.00831 7.03213 7.15744 7.33487 7.40587 7.61897 7.76397 7.97171 8.31787 8.35086 8.51015 8.62482 9.80091 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.004627 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.954820 B = 6050.569440 C = 6933.201352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.231 3.769 3 N -1.107 6.107 4 S 2.684 3.316 5 O -0.979 6.979 6 O -0.979 6.979 7 C -0.779 4.779 8 C 0.003 3.997 9 C -0.179 4.179 10 C 0.142 3.858 11 C -0.438 4.438 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.776 5.776 15 Si 0.918 3.082 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.228 4.228 20 C -0.004 4.004 21 C 0.470 3.530 22 O -0.507 6.507 23 O -0.490 6.490 24 C -0.151 4.151 25 C -0.177 4.177 26 C -0.170 4.170 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.416 0.584 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.288 0.712 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -3.744 10.656 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.139 3.861 3 N -0.863 5.863 4 S 2.784 3.216 5 O -0.969 6.969 6 O -0.970 6.970 7 C -0.875 4.875 8 C -0.018 4.018 9 C -0.200 4.200 10 C 0.138 3.862 11 C -0.466 4.466 12 H 0.103 0.897 13 C -0.149 4.149 14 N -0.400 5.400 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.249 4.249 20 C -0.024 4.024 21 C 0.309 3.691 22 O -0.394 6.394 23 O -0.301 6.301 24 C -0.170 4.170 25 C -0.214 4.214 26 C -0.207 4.207 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.605 -3.068 11.006 11.538 hybrid contribution 1.280 -0.943 -1.494 2.182 sum -0.326 -4.011 9.512 10.328 Atomic orbital electron populations 1.22473 0.89886 1.03794 1.06032 1.19430 0.95331 0.81386 0.89917 1.55866 1.60562 1.20961 1.48921 1.01521 0.73374 0.72739 0.73957 1.93498 1.29517 1.86529 1.87352 1.93510 1.73754 1.43202 1.86514 1.29058 1.06229 1.29875 1.22387 1.20140 0.91968 0.94150 0.95501 1.21329 1.01088 1.01718 0.95826 1.17859 0.90611 0.86050 0.91688 1.19885 0.93157 1.35141 0.98402 0.89722 1.26059 0.96357 0.92862 0.99582 1.69752 1.04735 1.32320 1.33161 0.86180 0.78127 0.80198 0.81326 1.18508 1.19968 1.18675 1.21076 0.98720 1.07787 0.97313 1.20202 0.95651 0.92164 0.94418 1.23546 0.79905 0.80720 0.84890 1.90700 1.57074 1.32989 1.58626 1.84522 1.33469 1.65407 1.46719 1.22332 1.05656 0.91299 0.97729 1.23183 0.93662 1.01262 1.03278 1.23129 0.97651 0.96871 1.03077 0.88947 0.90392 0.90045 0.75019 0.88137 0.85867 0.90101 0.88355 0.87962 0.72718 0.85591 0.88496 0.87994 0.87980 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 6.72 37.16 0.25 -2.14 16 2 C 0.23 3.33 0.97 -132.97 -0.13 3.20 16 3 N -1.11 -16.33 5.30 -0.40 0.00 -16.34 16 4 S 2.68 50.59 5.62 -107.50 -0.60 49.99 16 5 O -0.98 -19.64 13.82 -57.17 -0.79 -20.43 16 6 O -0.98 -20.55 17.41 -57.17 -1.00 -21.55 16 7 C -0.78 -16.45 3.54 -39.29 -0.14 -16.59 16 8 C 0.00 0.06 8.56 -39.66 -0.34 -0.28 16 9 C -0.18 -4.22 8.66 -38.87 -0.34 -4.56 16 10 C 0.14 3.42 5.55 -106.82 -0.59 2.83 16 11 C -0.44 -10.46 9.06 -37.74 -0.34 -10.80 16 12 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 13 C 0.07 1.61 5.25 -17.34 -0.09 1.52 16 14 N -0.78 -17.56 10.86 55.55 0.60 -16.96 16 15 Si 0.92 16.90 29.57 -169.99 -5.03 11.87 16 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 19 C -0.23 -5.29 9.80 -38.87 -0.38 -5.67 16 20 C 0.00 -0.09 7.89 -39.66 -0.31 -0.40 16 21 C 0.47 7.94 2.24 36.00 0.08 8.03 16 22 O -0.51 -9.70 16.78 -18.75 -0.31 -10.02 16 23 O -0.49 -8.39 10.44 -39.26 -0.41 -8.80 16 24 C -0.15 -1.67 5.32 -90.61 -0.48 -2.16 16 25 C -0.18 -1.93 9.68 -26.69 -0.26 -2.19 16 26 C -0.17 -1.71 9.47 -26.69 -0.25 -1.96 16 27 H 0.09 1.58 5.47 -51.93 -0.28 1.30 16 28 H 0.08 1.01 6.69 -51.93 -0.35 0.67 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.42 4.98 8.58 -34.46 -0.30 4.68 16 31 H 0.10 2.08 7.73 -52.49 -0.41 1.68 16 32 H 0.12 2.99 6.24 -52.48 -0.33 2.66 16 33 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.10 2.15 6.81 -52.49 -0.36 1.80 16 36 H 0.41 7.12 9.10 45.56 0.41 7.54 16 37 H 0.13 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.10 1.25 6.18 -51.93 -0.32 0.93 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.18 7.26 -51.93 -0.38 0.80 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -28.80 344.64 -9.63 -38.44 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -3.96 Total: 19.77 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -3.33 Total: -31.18 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.60 Total: -33.29 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -2.51 Total: -60.79 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.60 Total: 49.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.80 -9.63 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.933 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds