Wall clock time and date at job start Tue Mar 31 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47254 * 2 1 4 4 S 1.65600 * 120.00128 * 307.22766 * 3 2 1 5 5 O 1.42098 * 106.40288 * 51.75868 * 4 3 2 6 6 O 1.42100 * 106.40667 * 184.68269 * 4 3 2 7 7 C 1.76210 * 107.21796 * 298.21883 * 4 3 2 8 8 C 1.38627 * 119.74729 * 275.47178 * 7 4 3 9 9 C 1.37622 * 120.24599 * 179.72401 * 8 7 4 10 10 C 1.40714 * 119.74267 * 0.56391 * 9 8 7 11 11 C 1.41399 * 120.24207 * 179.68353 * 10 9 8 12 12 H 1.08001 * 119.99606 * 209.05938 * 11 10 9 13 13 C 1.39942 * 119.99933 * 29.06377 * 11 10 9 14 14 N 1.30821 * 120.00244 * 10.63760 * 13 11 10 15 15 Si 1.86801 * 119.99980 * 190.64023 * 13 11 10 16 16 H 1.48502 * 109.47128 * 59.99339 * 15 13 11 17 17 H 1.48490 * 109.47363 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47146 * 300.00227 * 15 13 11 19 19 C 1.40719 * 119.51403 * 359.70838 * 10 9 8 20 20 C 1.37615 * 119.74081 * 0.02562 * 19 10 9 21 21 C 1.50698 * 109.47065 * 239.99770 * 2 1 3 22 22 O 1.20826 * 120.00066 * 335.00134 * 21 2 1 23 23 O 1.34231 * 120.00221 * 154.99917 * 21 2 1 24 24 C 1.53005 * 109.47293 * 120.00029 * 2 1 3 25 25 C 1.53003 * 117.49802 * 123.74371 * 24 2 1 26 26 C 1.53004 * 117.49546 * 55.08266 * 24 2 1 27 27 H 1.08997 * 109.47016 * 67.91490 * 1 2 3 28 28 H 1.08995 * 109.47014 * 187.91502 * 1 2 3 29 29 H 1.09002 * 109.47049 * 307.91845 * 1 2 3 30 30 H 0.96999 * 120.00507 * 127.50707 * 3 2 1 31 31 H 1.08000 * 119.88060 * 359.97298 * 8 7 4 32 32 H 1.08004 * 120.12979 * 180.27727 * 9 8 7 33 33 H 0.96999 * 119.99920 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.12596 * 179.97438 * 19 10 9 35 35 H 1.08001 * 119.87166 * 180.02562 * 20 19 10 36 36 H 0.96704 * 117.00559 * 180.02562 * 23 21 2 37 37 H 1.09000 * 115.54580 * 269.42017 * 24 2 1 38 38 H 1.08992 * 117.50044 * 0.02562 * 25 24 2 39 39 H 1.09003 * 117.49213 * 145.02248 * 25 24 2 40 40 H 1.08994 * 117.49783 * 214.98213 * 26 24 2 41 41 H 1.08997 * 117.49879 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 16 1.4764 2.4510 -1.1419 5 8 0.0571 2.3906 -1.1068 6 8 2.2082 3.6530 -0.9451 7 6 1.9623 1.8248 -2.7157 8 6 3.2322 2.0952 -3.2013 9 6 3.6244 1.6065 -4.4266 10 6 2.7267 0.8398 -5.1922 11 6 3.1163 0.3381 -6.4555 12 1 2.3755 0.1785 -7.2250 13 6 4.4618 0.0483 -6.7086 14 7 5.3254 0.0404 -5.7259 15 14 5.0248 -0.3274 -8.4497 16 1 4.7378 0.8375 -9.3249 17 1 6.4847 -0.5985 -8.4502 18 1 4.2992 -1.5191 -8.9583 19 6 1.4382 0.5764 -4.6917 20 6 1.0695 1.0706 -3.4614 21 6 2.0323 -0.7104 -1.2304 22 8 1.3396 -1.5363 -1.7763 23 8 3.2493 -0.4258 -1.7200 24 6 2.0401 -0.7213 1.2493 25 6 2.9863 -1.9060 1.0441 26 6 1.5431 -2.1475 1.4938 27 1 -0.3633 0.3864 -0.9522 28 1 -0.3633 -1.0178 0.1415 29 1 -0.3633 0.6316 0.8107 30 1 2.6622 1.6680 0.6664 31 1 3.9178 2.6883 -2.6142 32 1 4.6158 1.8146 -4.8012 33 1 6.2579 -0.1608 -5.9014 34 1 0.7411 -0.0106 -5.2712 35 1 0.0813 0.8694 -3.0750 36 1 3.5279 -0.9070 -2.5112 37 1 2.2061 -0.0896 2.1219 38 1 3.2458 -2.1712 0.0193 39 1 3.7748 -2.0538 1.7821 40 1 1.3828 -2.4543 2.5274 41 1 0.8532 -2.5721 0.7646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:32 Heat of formation + Delta-G solvation = -134.628393 kcal Electronic energy + Delta-G solvation = -29234.798091 eV Core-core repulsion = 25206.677406 eV Total energy + Delta-G solvation = -4028.120685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87338 -39.40819 -38.73549 -38.16825 -36.97147 -36.83574 -35.78887 -35.70057 -32.03469 -31.30777 -30.67545 -27.61273 -26.44097 -24.11607 -23.26972 -23.11610 -22.92879 -20.78314 -20.37622 -19.40074 -19.21225 -18.74626 -18.34504 -18.14952 -17.23843 -17.13215 -16.36853 -15.84023 -15.77600 -15.45682 -15.17580 -14.93986 -14.64250 -14.36611 -14.20644 -13.93946 -13.89610 -13.63660 -13.47911 -13.17295 -12.96828 -12.88661 -12.86742 -12.82097 -12.60885 -12.45751 -12.27327 -12.09856 -12.00008 -11.84443 -11.52584 -11.38340 -11.32884 -11.25778 -11.16936 -10.56839 -9.70655 -9.50734 -8.80067 -6.63878 -0.40214 0.48125 1.04198 1.20928 1.36825 1.43960 1.47980 2.01217 2.07841 2.12857 2.52524 2.78186 2.87713 3.39748 3.48944 3.58698 3.71379 3.91118 4.03204 4.14741 4.24358 4.26443 4.33676 4.46360 4.72047 4.80837 4.87381 4.90407 4.97034 4.97600 5.12442 5.16744 5.21714 5.23260 5.30981 5.54065 5.60269 5.66735 5.78639 5.94767 6.06151 6.18894 6.51927 6.71874 6.81562 6.95388 8.13018 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.004627 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.954820 B = 6050.569440 C = 6933.201352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.230 3.770 3 N -1.089 6.089 4 S 2.712 3.288 5 O -0.987 6.987 6 O -0.996 6.996 7 C -0.785 4.785 8 C 0.004 3.996 9 C -0.192 4.192 10 C 0.122 3.878 11 C -0.471 4.471 12 H 0.083 0.917 13 C 0.039 3.961 14 N -0.797 5.797 15 Si 0.986 3.014 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.261 1.261 19 C -0.247 4.247 20 C -0.003 4.003 21 C 0.468 3.532 22 O -0.534 6.534 23 O -0.493 6.493 24 C -0.152 4.152 25 C -0.185 4.185 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.433 0.567 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.296 0.704 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.409 0.591 37 H 0.160 0.840 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -3.985 12.629 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.138 3.862 3 N -0.850 5.850 4 S 2.808 3.192 5 O -0.977 6.977 6 O -0.987 6.987 7 C -0.878 4.878 8 C -0.016 4.016 9 C -0.213 4.213 10 C 0.119 3.881 11 C -0.499 4.499 12 H 0.101 0.899 13 C -0.180 4.180 14 N -0.420 5.420 15 Si 0.806 3.194 16 H -0.185 1.185 17 H -0.187 1.187 18 H -0.185 1.185 19 C -0.268 4.268 20 C -0.023 4.023 21 C 0.309 3.691 22 O -0.423 6.423 23 O -0.303 6.303 24 C -0.171 4.171 25 C -0.221 4.221 26 C -0.196 4.196 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.271 0.729 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.268 0.732 37 H 0.177 0.823 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.179 -3.298 12.970 13.435 hybrid contribution 1.108 -0.886 -1.990 2.444 sum -0.071 -4.184 10.980 11.751 Atomic orbital electron populations 1.22527 0.89823 1.05024 1.05231 1.19636 0.95387 0.80832 0.90302 1.55419 1.60927 1.20745 1.47922 1.00732 0.72875 0.72321 0.73253 1.93498 1.30182 1.86732 1.87313 1.93487 1.74124 1.44534 1.86550 1.29483 1.05506 1.28582 1.24239 1.20272 0.92539 0.93792 0.95015 1.21265 1.00723 1.02611 0.96668 1.18083 0.91122 0.86604 0.92334 1.20114 0.94392 1.36778 0.98618 0.89930 1.26793 0.95762 0.92195 1.03266 1.69776 1.05294 1.32129 1.34819 0.85172 0.78084 0.79772 0.76370 1.18519 1.18719 1.18501 1.21175 0.98797 1.08688 0.98090 1.20288 0.96058 0.91938 0.93972 1.24183 0.79315 0.80383 0.85216 1.90683 1.57664 1.34430 1.59569 1.84526 1.33891 1.65344 1.46503 1.22439 1.06016 0.91887 0.96799 1.23229 0.95003 1.01337 1.02575 1.23228 0.96457 0.95523 1.04394 0.91741 0.89033 0.88030 0.72941 0.86923 0.86969 0.89241 0.88487 0.87380 0.73239 0.82282 0.91182 0.85580 0.84788 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 6.72 71.98 0.48 -4.12 16 2 C 0.23 6.19 0.97 2.86 0.00 6.19 16 3 N -1.09 -29.69 5.30 -155.19 -0.82 -30.51 16 4 S 2.71 98.69 5.62 -56.49 -0.32 98.37 16 5 O -0.99 -38.36 13.82 -128.00 -1.77 -40.13 16 6 O -1.00 -40.21 17.41 -128.00 -2.23 -42.43 16 7 C -0.78 -33.21 3.54 22.46 0.08 -33.13 16 8 C 0.00 0.17 8.56 22.22 0.19 0.36 16 9 C -0.19 -9.33 8.66 22.73 0.20 -9.14 16 10 C 0.12 6.13 5.55 -21.29 -0.12 6.01 16 11 C -0.47 -23.31 9.06 23.46 0.21 -23.10 16 12 H 0.08 3.96 7.87 -2.91 -0.02 3.94 16 13 C 0.04 1.75 5.25 85.26 0.45 2.19 16 14 N -0.80 -36.62 10.86 21.83 0.24 -36.38 16 15 Si 0.99 34.63 29.57 68.60 2.03 36.66 16 16 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 17 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 19 C -0.25 -11.90 9.80 22.73 0.22 -11.68 16 20 C 0.00 -0.12 7.89 22.22 0.18 0.06 16 21 C 0.47 15.73 2.24 71.24 0.16 15.89 16 22 O -0.53 -20.83 16.78 21.97 0.37 -20.47 16 23 O -0.49 -17.05 10.44 -51.42 -0.54 -17.59 16 24 C -0.15 -2.87 5.32 -10.79 -0.06 -2.93 16 25 C -0.18 -3.58 9.68 30.62 0.30 -3.28 16 26 C -0.16 -2.70 9.47 30.62 0.29 -2.41 16 27 H 0.06 2.16 5.47 -2.39 -0.01 2.14 16 28 H 0.09 2.23 6.69 -2.39 -0.02 2.21 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.43 8.97 8.58 -96.75 -0.83 8.14 16 31 H 0.11 4.64 7.73 -2.91 -0.02 4.62 16 32 H 0.11 5.63 6.24 -2.91 -0.02 5.61 16 33 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16 34 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.11 4.64 6.81 -2.91 -0.02 4.62 16 36 H 0.41 14.80 9.10 -74.05 -0.67 14.13 16 37 H 0.16 2.00 8.09 -2.39 -0.02 1.98 16 38 H 0.07 1.76 6.18 -2.39 -0.01 1.75 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.83 7.26 -2.39 -0.02 1.81 16 Total: -1.00 -62.86 344.64 -0.86 -63.72 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.40 Total: 47.84 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 2.58 Total: -59.08 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.59 Total: -66.89 kcal Atomic # 8 Polarization: -116.45 SS G_CDS: -4.17 Total: -120.62 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 98.69 SS G_CDS: -0.32 Total: 98.37 kcal Total: -62.86 -0.86 -63.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.908 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds