Wall clock time and date at job start Tue Mar 31 2020 22:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47225 * 2 1 4 4 S 1.65603 * 120.00115 * 60.00111 * 3 2 1 5 5 O 1.42099 * 106.40239 * 311.46091 * 4 3 2 6 6 O 1.42106 * 106.40430 * 178.53663 * 4 3 2 7 7 C 1.76205 * 107.21592 * 65.00159 * 4 3 2 8 8 C 1.38636 * 119.75104 * 90.00171 * 7 4 3 9 9 C 1.37616 * 120.24699 * 179.70369 * 8 7 4 10 10 C 1.40721 * 119.74615 * 0.27327 * 9 8 7 11 11 C 1.41398 * 120.24475 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99940 * 204.38459 * 11 10 9 13 13 C 1.39950 * 119.99737 * 24.38136 * 11 10 9 14 14 N 1.30819 * 120.00082 * 17.86893 * 13 11 10 15 15 Si 1.86800 * 119.99528 * 197.87014 * 13 11 10 16 16 H 1.48505 * 109.47342 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47335 * 120.00156 * 15 13 11 18 18 H 1.48508 * 109.46733 * 239.99831 * 15 13 11 19 19 C 1.40714 * 119.51046 * 359.97438 * 10 9 8 20 20 C 1.37620 * 119.74777 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.47306 * 120.00423 * 2 1 3 22 22 O 1.20829 * 120.00027 * 24.99451 * 21 2 1 23 23 O 1.34227 * 120.00097 * 205.00283 * 21 2 1 24 24 C 1.53001 * 109.46814 * 239.99840 * 2 1 3 25 25 C 1.52999 * 117.49848 * 3.75013 * 24 2 1 26 26 C 1.53000 * 117.50104 * 295.09070 * 24 2 1 27 27 H 1.08998 * 109.47062 * 59.99796 * 1 2 3 28 28 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46820 * 299.99701 * 1 2 3 30 30 H 0.97001 * 120.00121 * 239.99798 * 3 2 1 31 31 H 1.07993 * 119.87364 * 359.97284 * 8 7 4 32 32 H 1.08000 * 120.12884 * 180.29688 * 9 8 7 33 33 H 0.97001 * 119.99459 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.12730 * 180.02562 * 19 10 9 35 35 H 1.07994 * 119.87695 * 180.02562 * 20 19 10 36 36 H 0.96695 * 117.00023 * 179.97438 * 23 21 2 37 37 H 1.08999 * 115.54618 * 149.41378 * 24 2 1 38 38 H 1.08994 * 117.50271 * 0.02562 * 25 24 2 39 39 H 1.09003 * 117.49966 * 145.01913 * 25 24 2 40 40 H 1.09003 * 117.49865 * 214.97776 * 26 24 2 41 41 H 1.08998 * 117.50069 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 16 1.6184 2.4008 1.2420 5 8 0.2140 2.2811 1.4230 6 8 2.2645 3.6370 0.9703 7 6 2.3649 1.7601 2.7038 8 6 3.6437 2.1629 3.0565 9 6 4.2342 1.6737 4.1993 10 6 3.5371 0.7568 5.0077 11 6 4.1335 0.2478 6.1844 12 1 3.8132 -0.7028 6.5844 13 6 5.1389 0.9760 6.8306 14 7 5.2904 2.2501 6.5758 15 14 6.2646 0.1283 8.0568 16 1 5.8882 -1.3041 8.1664 17 1 7.6715 0.2368 7.5945 18 1 6.1285 0.7784 9.3851 19 6 2.2417 0.3511 4.6371 20 6 1.6708 0.8534 3.4901 21 6 2.0324 -0.7105 1.2304 22 8 1.3397 -1.5363 1.7763 23 8 3.2494 -0.4258 1.7199 24 6 2.0400 -0.7213 -1.2493 25 6 0.9986 -1.2032 -2.2613 26 6 1.7328 -2.2147 -1.3777 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5761 1.6984 -0.7275 31 1 4.1768 2.8666 2.4345 32 1 5.2286 1.9924 4.4747 33 1 5.9875 2.7546 7.0234 34 1 1.6975 -0.3517 5.2505 35 1 0.6766 0.5438 3.2039 36 1 3.5279 -0.9070 2.5111 37 1 2.9948 -0.3685 -1.6389 38 1 -0.0497 -1.0060 -2.0374 39 1 1.2685 -1.1678 -3.3168 40 1 2.4855 -2.8443 -1.8521 41 1 1.1679 -2.6834 -0.5720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:35 Heat of formation + Delta-G solvation = -109.975409 kcal Electronic energy + Delta-G solvation = -29047.969535 eV Core-core repulsion = 25020.917884 eV Total energy + Delta-G solvation = -4027.051652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58666 -38.12755 -37.46597 -36.60097 -35.58819 -35.23121 -34.47718 -34.04249 -30.28617 -29.50054 -29.34144 -25.91599 -25.65999 -22.91232 -22.26924 -21.52182 -21.13236 -19.57142 -18.92100 -17.83095 -17.68580 -17.42720 -16.83537 -16.65658 -16.01743 -15.49761 -15.07703 -14.76084 -14.32376 -14.14815 -13.71630 -13.45234 -13.23247 -13.14522 -12.71559 -12.42808 -12.29423 -12.18498 -11.81551 -11.74803 -11.55129 -11.50920 -11.46622 -11.36877 -11.21113 -11.02514 -10.92446 -10.68347 -10.61201 -10.51700 -10.35344 -10.33900 -9.77504 -9.64412 -9.49776 -9.18869 -7.94755 -7.69667 -7.15699 -4.81338 1.12731 2.22968 2.41476 2.85176 2.88224 2.92603 2.93892 3.15071 3.51292 3.65078 3.73389 4.18833 4.34478 4.49004 4.66059 4.72840 4.90311 5.00601 5.19874 5.34763 5.47132 5.47416 5.53546 5.69275 5.83381 5.91233 5.95920 6.03626 6.11193 6.15451 6.51606 6.67838 6.70106 6.89455 6.96187 7.01429 7.14299 7.31602 7.41340 7.63009 7.75322 7.95910 8.28519 8.31116 8.49872 8.62825 9.75516 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.004184 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.222131 B = 6691.309659 C = 7511.289832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.233 3.767 3 N -1.108 6.108 4 S 2.683 3.317 5 O -0.978 6.978 6 O -0.978 6.978 7 C -0.772 4.772 8 C 0.002 3.998 9 C -0.185 4.185 10 C 0.139 3.861 11 C -0.436 4.436 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.763 5.763 15 Si 0.915 3.085 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.235 4.235 20 C -0.006 4.006 21 C 0.468 3.532 22 O -0.507 6.507 23 O -0.486 6.486 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.174 4.174 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.416 0.584 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.289 0.711 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.411 0.589 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -5.900 -12.139 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.142 3.858 3 N -0.864 5.864 4 S 2.783 3.217 5 O -0.969 6.969 6 O -0.969 6.969 7 C -0.869 4.869 8 C -0.018 4.018 9 C -0.205 4.205 10 C 0.135 3.865 11 C -0.463 4.463 12 H 0.105 0.895 13 C -0.150 4.150 14 N -0.385 5.385 15 Si 0.738 3.262 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.256 4.256 20 C -0.026 4.026 21 C 0.308 3.692 22 O -0.395 6.395 23 O -0.296 6.296 24 C -0.176 4.176 25 C -0.207 4.207 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.270 0.730 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.361 -4.966 -12.248 13.426 hybrid contribution 1.520 -0.874 1.285 2.174 sum -0.841 -5.840 -10.963 12.450 Atomic orbital electron populations 1.22758 0.90509 1.04209 1.06431 1.19272 0.95036 0.81272 0.90247 1.55879 1.67911 1.21484 1.41104 1.01540 0.73762 0.72802 0.73592 1.93447 1.30707 1.86259 1.86456 1.93510 1.77104 1.40916 1.85348 1.28954 1.10345 1.24590 1.23005 1.20129 0.91594 0.94448 0.95654 1.21287 1.00800 1.03353 0.95061 1.17827 0.89531 0.88335 0.90821 1.19971 1.14647 1.05153 1.06546 0.89492 1.26122 0.96825 0.94368 0.97636 1.69832 1.26867 1.07089 1.34737 0.86134 0.79676 0.80864 0.79512 1.18009 1.19261 1.19558 1.20982 0.96535 1.08092 0.99970 1.20225 0.96221 0.92282 0.93897 1.23565 0.80077 0.80841 0.84729 1.90684 1.57196 1.32927 1.58666 1.84599 1.33546 1.64768 1.46712 1.22336 1.01308 0.97505 0.96498 1.23242 0.98365 1.02783 0.96328 1.23123 1.03700 0.91006 1.03306 0.90227 0.90368 0.87494 0.74985 0.88078 0.86119 0.90004 0.88354 0.88147 0.72966 0.86038 0.87368 0.88307 0.88215 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 6.22 37.16 0.23 -2.28 16 2 C 0.23 3.24 0.96 -132.97 -0.13 3.12 16 3 N -1.11 -15.99 5.32 -0.40 0.00 -15.99 16 4 S 2.68 50.74 5.63 -107.50 -0.61 50.14 16 5 O -0.98 -19.93 13.88 -57.17 -0.79 -20.72 16 6 O -0.98 -20.68 17.26 -57.17 -0.99 -21.67 16 7 C -0.77 -16.31 3.51 -39.29 -0.14 -16.45 16 8 C 0.00 0.05 8.98 -39.66 -0.36 -0.31 16 9 C -0.18 -4.36 8.70 -38.87 -0.34 -4.70 16 10 C 0.14 3.31 5.58 -106.82 -0.60 2.72 16 11 C -0.44 -10.30 9.05 -37.74 -0.34 -10.65 16 12 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 13 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 14 N -0.76 -17.92 10.95 55.55 0.61 -17.31 16 15 Si 0.91 16.70 29.59 -169.99 -5.03 11.67 16 16 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 17 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 C -0.24 -5.35 9.37 -38.87 -0.36 -5.71 16 20 C -0.01 -0.13 6.15 -39.66 -0.24 -0.38 16 21 C 0.47 7.64 3.72 36.01 0.13 7.78 16 22 O -0.51 -9.21 15.85 -18.75 -0.30 -9.51 16 23 O -0.49 -8.01 9.61 -39.25 -0.38 -8.39 16 24 C -0.16 -1.68 5.33 -90.62 -0.48 -2.16 16 25 C -0.17 -1.47 9.51 -26.69 -0.25 -1.73 16 26 C -0.17 -1.70 9.48 -26.69 -0.25 -1.96 16 27 H 0.08 0.93 7.22 -51.93 -0.38 0.56 16 28 H 0.08 0.99 6.91 -51.93 -0.36 0.63 16 29 H 0.11 1.79 5.36 -51.93 -0.28 1.51 16 30 H 0.42 4.83 8.53 -34.47 -0.29 4.54 16 31 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 32 H 0.12 2.94 6.16 -52.49 -0.32 2.61 16 33 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.10 2.14 7.25 -52.49 -0.38 1.76 16 36 H 0.41 6.62 8.57 45.56 0.39 7.01 16 37 H 0.12 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.11 0.92 5.82 -51.93 -0.30 0.61 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.17 7.44 -51.93 -0.39 0.79 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -29.31 340.57 -9.51 -38.82 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -3.94 Total: 18.97 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -3.22 Total: -31.15 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.61 Total: -33.30 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -2.45 Total: -60.29 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 50.74 SS G_CDS: -0.61 Total: 50.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.31 -9.51 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.153 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds