Wall clock time and date at job start Tue Mar 31 2020 22:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47225 * 2 1 4 4 S 1.65603 * 120.00115 * 60.00111 * 3 2 1 5 5 O 1.42099 * 106.40239 * 311.46091 * 4 3 2 6 6 O 1.42106 * 106.40430 * 178.53663 * 4 3 2 7 7 C 1.76205 * 107.21592 * 65.00159 * 4 3 2 8 8 C 1.38636 * 119.75104 * 90.00171 * 7 4 3 9 9 C 1.37616 * 120.24699 * 179.70369 * 8 7 4 10 10 C 1.40721 * 119.74615 * 0.27327 * 9 8 7 11 11 C 1.41398 * 120.24475 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99940 * 204.38459 * 11 10 9 13 13 C 1.39950 * 119.99737 * 24.38136 * 11 10 9 14 14 N 1.30819 * 120.00082 * 17.86893 * 13 11 10 15 15 Si 1.86800 * 119.99528 * 197.87014 * 13 11 10 16 16 H 1.48505 * 109.47342 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47335 * 120.00156 * 15 13 11 18 18 H 1.48508 * 109.46733 * 239.99831 * 15 13 11 19 19 C 1.40714 * 119.51046 * 359.97438 * 10 9 8 20 20 C 1.37620 * 119.74777 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.47306 * 120.00423 * 2 1 3 22 22 O 1.20829 * 120.00027 * 24.99451 * 21 2 1 23 23 O 1.34227 * 120.00097 * 205.00283 * 21 2 1 24 24 C 1.53001 * 109.46814 * 239.99840 * 2 1 3 25 25 C 1.52999 * 117.49848 * 3.75013 * 24 2 1 26 26 C 1.53000 * 117.50104 * 295.09070 * 24 2 1 27 27 H 1.08998 * 109.47062 * 59.99796 * 1 2 3 28 28 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46820 * 299.99701 * 1 2 3 30 30 H 0.97001 * 120.00121 * 239.99798 * 3 2 1 31 31 H 1.07993 * 119.87364 * 359.97284 * 8 7 4 32 32 H 1.08000 * 120.12884 * 180.29688 * 9 8 7 33 33 H 0.97001 * 119.99459 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.12730 * 180.02562 * 19 10 9 35 35 H 1.07994 * 119.87695 * 180.02562 * 20 19 10 36 36 H 0.96695 * 117.00023 * 179.97438 * 23 21 2 37 37 H 1.08999 * 115.54618 * 149.41378 * 24 2 1 38 38 H 1.08994 * 117.50271 * 0.02562 * 25 24 2 39 39 H 1.09003 * 117.49966 * 145.01913 * 25 24 2 40 40 H 1.09003 * 117.49865 * 214.97776 * 26 24 2 41 41 H 1.08998 * 117.50069 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 16 1.6184 2.4008 1.2420 5 8 0.2140 2.2811 1.4230 6 8 2.2645 3.6370 0.9703 7 6 2.3649 1.7601 2.7038 8 6 3.6437 2.1629 3.0565 9 6 4.2342 1.6737 4.1993 10 6 3.5371 0.7568 5.0077 11 6 4.1335 0.2478 6.1844 12 1 3.8132 -0.7028 6.5844 13 6 5.1389 0.9760 6.8306 14 7 5.2904 2.2501 6.5758 15 14 6.2646 0.1283 8.0568 16 1 5.8882 -1.3041 8.1664 17 1 7.6715 0.2368 7.5945 18 1 6.1285 0.7784 9.3851 19 6 2.2417 0.3511 4.6371 20 6 1.6708 0.8534 3.4901 21 6 2.0324 -0.7105 1.2304 22 8 1.3397 -1.5363 1.7763 23 8 3.2494 -0.4258 1.7199 24 6 2.0400 -0.7213 -1.2493 25 6 0.9986 -1.2032 -2.2613 26 6 1.7328 -2.2147 -1.3777 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5761 1.6984 -0.7275 31 1 4.1768 2.8666 2.4345 32 1 5.2286 1.9924 4.4747 33 1 5.9875 2.7546 7.0234 34 1 1.6975 -0.3517 5.2505 35 1 0.6766 0.5438 3.2039 36 1 3.5279 -0.9070 2.5111 37 1 2.9948 -0.3685 -1.6389 38 1 -0.0497 -1.0060 -2.0374 39 1 1.2685 -1.1678 -3.3168 40 1 2.4855 -2.8443 -1.8521 41 1 1.1679 -2.6834 -0.5720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:35 Heat of formation + Delta-G solvation = -129.700067 kcal Electronic energy + Delta-G solvation = -29048.824861 eV Core-core repulsion = 25020.917884 eV Total energy + Delta-G solvation = -4027.906977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81917 -39.50605 -38.90084 -38.19572 -36.95765 -36.84919 -35.77270 -35.57019 -32.05949 -31.28351 -30.52026 -27.63717 -26.81492 -23.94818 -23.28166 -23.09991 -22.84796 -20.69444 -20.38558 -19.42591 -19.15925 -18.78695 -18.31672 -18.08445 -17.20694 -17.08623 -16.39336 -16.24336 -15.79722 -15.35329 -15.15221 -15.02223 -14.71097 -14.44277 -14.16963 -13.99823 -13.90236 -13.52626 -13.31927 -13.15505 -13.04447 -12.95477 -12.86105 -12.72151 -12.64423 -12.30837 -12.21067 -12.03875 -11.99802 -11.68300 -11.55169 -11.46870 -11.29878 -11.19300 -11.13678 -10.53175 -9.72715 -9.49877 -8.85902 -6.62371 -0.41164 0.50365 1.02289 1.19378 1.36616 1.41727 1.52886 1.98649 2.09552 2.13173 2.51167 2.85627 2.89716 3.44317 3.48542 3.56972 3.70395 3.91916 4.08901 4.13294 4.26452 4.29800 4.35030 4.48184 4.74288 4.83494 4.88835 4.93124 4.98414 5.01387 5.13509 5.15963 5.24052 5.28843 5.38882 5.53009 5.61711 5.66304 5.80232 5.94594 6.06779 6.18345 6.52148 6.71183 6.82688 6.96031 8.09007 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.004184 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.222131 B = 6691.309659 C = 7511.289832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.232 3.768 3 N -1.089 6.089 4 S 2.709 3.291 5 O -0.990 6.990 6 O -0.997 6.997 7 C -0.777 4.777 8 C 0.001 3.999 9 C -0.199 4.199 10 C 0.121 3.879 11 C -0.466 4.466 12 H 0.088 0.912 13 C 0.038 3.962 14 N -0.797 5.797 15 Si 0.988 3.012 16 H -0.255 1.255 17 H -0.260 1.260 18 H -0.266 1.266 19 C -0.248 4.248 20 C -0.002 4.002 21 C 0.463 3.537 22 O -0.530 6.530 23 O -0.489 6.489 24 C -0.170 4.170 25 C -0.150 4.150 26 C -0.179 4.179 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.433 0.567 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.298 0.702 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -6.458 -14.003 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.141 3.859 3 N -0.850 5.850 4 S 2.806 3.194 5 O -0.980 6.980 6 O -0.988 6.988 7 C -0.871 4.871 8 C -0.019 4.019 9 C -0.219 4.219 10 C 0.118 3.882 11 C -0.493 4.493 12 H 0.106 0.894 13 C -0.182 4.182 14 N -0.420 5.420 15 Si 0.808 3.192 16 H -0.178 1.178 17 H -0.185 1.185 18 H -0.191 1.191 19 C -0.268 4.268 20 C -0.022 4.022 21 C 0.304 3.696 22 O -0.419 6.419 23 O -0.300 6.300 24 C -0.189 4.189 25 C -0.186 4.186 26 C -0.216 4.216 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.271 0.729 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.268 0.732 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.065 -5.513 -14.102 15.281 hybrid contribution 1.334 -0.705 1.748 2.309 sum -0.731 -6.218 -12.354 13.850 Atomic orbital electron populations 1.22800 0.90337 1.04890 1.06196 1.19467 0.95142 0.80547 0.90702 1.55388 1.68109 1.21443 1.40042 1.00754 0.73045 0.72358 0.73223 1.93453 1.31341 1.86487 1.86748 1.93483 1.77432 1.42386 1.85500 1.29357 1.09741 1.23456 1.24547 1.20259 0.92054 0.94329 0.95265 1.21244 1.00623 1.04222 0.95855 1.18035 0.90013 0.88782 0.91384 1.20220 1.16209 1.05696 1.07176 0.89353 1.26935 0.97518 0.94642 0.99094 1.69862 1.27740 1.08376 1.36000 0.85056 0.77610 0.79594 0.76971 1.17785 1.18465 1.19075 1.21056 0.96506 1.08652 1.00604 1.20246 0.96218 0.92180 0.93559 1.24196 0.79597 0.80664 0.85109 1.90670 1.57663 1.34156 1.59450 1.84601 1.33914 1.64795 1.46655 1.22377 1.02991 0.97866 0.95706 1.23386 0.97903 1.00225 0.97119 1.23165 1.04357 0.90665 1.03432 0.87704 0.89339 0.90381 0.72919 0.87047 0.87265 0.89121 0.88360 0.87924 0.73172 0.84314 0.87116 0.85699 0.86561 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.79 6.22 71.98 0.45 -4.34 16 2 C 0.23 6.05 0.96 2.86 0.00 6.05 16 3 N -1.09 -29.26 5.32 -155.19 -0.83 -30.08 16 4 S 2.71 99.72 5.63 -56.49 -0.32 99.40 16 5 O -0.99 -39.48 13.88 -128.00 -1.78 -41.26 16 6 O -1.00 -40.92 17.26 -128.00 -2.21 -43.13 16 7 C -0.78 -32.91 3.51 22.46 0.08 -32.83 16 8 C 0.00 0.05 8.98 22.22 0.20 0.25 16 9 C -0.20 -9.67 8.70 22.73 0.20 -9.48 16 10 C 0.12 6.00 5.58 -21.29 -0.12 5.88 16 11 C -0.47 -22.64 9.05 23.46 0.21 -22.43 16 12 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 13 C 0.04 1.71 5.14 85.26 0.44 2.15 16 14 N -0.80 -38.09 10.95 21.83 0.24 -37.85 16 15 Si 0.99 34.19 29.59 68.60 2.03 36.22 16 16 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 18 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 19 C -0.25 -11.63 9.37 22.73 0.21 -11.41 16 20 C 0.00 -0.09 6.15 22.22 0.14 0.04 16 21 C 0.46 14.91 3.72 71.24 0.27 15.18 16 22 O -0.53 -19.39 15.85 21.95 0.35 -19.04 16 23 O -0.49 -16.17 9.61 -51.39 -0.49 -16.66 16 24 C -0.17 -3.12 5.33 -10.79 -0.06 -3.18 16 25 C -0.15 -2.01 9.51 30.62 0.29 -1.72 16 26 C -0.18 -3.04 9.48 30.62 0.29 -2.75 16 27 H 0.10 2.15 7.22 -2.39 -0.02 2.13 16 28 H 0.09 2.10 6.91 -2.39 -0.02 2.08 16 29 H 0.08 2.54 5.36 -2.39 -0.01 2.53 16 30 H 0.43 8.83 8.53 -96.74 -0.83 8.00 16 31 H 0.11 4.67 7.60 -2.91 -0.02 4.65 16 32 H 0.11 5.50 6.16 -2.91 -0.02 5.49 16 33 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 34 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.10 4.45 7.25 -2.91 -0.02 4.43 16 36 H 0.41 13.65 8.57 -74.06 -0.63 13.02 16 37 H 0.14 2.09 8.04 -2.39 -0.02 2.07 16 38 H 0.11 1.46 5.82 -2.39 -0.01 1.44 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.82 7.44 -2.39 -0.02 1.80 16 Total: -1.00 -63.60 340.57 -0.76 -64.36 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.35 Total: 46.64 kcal Atomic # 6 Polarization: -61.19 SS G_CDS: 2.60 Total: -58.59 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.59 Total: -67.93 kcal Atomic # 8 Polarization: -115.96 SS G_CDS: -4.13 Total: -120.09 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Atomic # 16 Polarization: 99.72 SS G_CDS: -0.32 Total: 99.40 kcal Total: -63.60 -0.76 -64.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.340 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds