Wall clock time and date at job start Tue Mar 31 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38634 * 120.24846 * 359.42742 * 11 10 9 13 13 S 1.76200 * 119.75186 * 180.30382 * 12 11 10 14 14 O 1.42109 * 106.40056 * 23.83159 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.75305 * 13 12 11 16 16 N 1.65601 * 107.21684 * 270.29707 * 13 12 11 17 17 C 1.46501 * 119.99718 * 269.99829 * 16 13 12 18 18 C 1.52999 * 109.47239 * 94.99835 * 17 16 13 19 19 C 1.50706 * 109.46985 * 179.97438 * 18 17 16 20 20 O 1.20823 * 120.00020 * 0.02562 * 19 18 17 21 21 O 1.34232 * 119.99788 * 180.02562 * 19 18 17 22 22 C 1.46501 * 120.00325 * 89.99898 * 16 13 12 23 23 C 1.53002 * 117.49813 * 188.74838 * 22 16 13 24 24 C 1.52998 * 117.49859 * 120.08828 * 22 16 13 25 25 C 1.38637 * 120.50173 * 0.59671 * 12 11 10 26 26 C 1.37623 * 120.24324 * 359.68437 * 25 12 11 27 27 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 30 30 H 1.09003 * 109.47446 * 215.00054 * 17 16 13 31 31 H 1.09007 * 109.47095 * 334.99927 * 17 16 13 32 32 H 1.08994 * 109.47290 * 299.99912 * 18 17 16 33 33 H 1.08999 * 109.46972 * 60.00353 * 18 17 16 34 34 H 0.96696 * 117.00057 * 180.02562 * 21 19 18 35 35 H 1.08999 * 115.54951 * 334.41362 * 22 16 13 36 36 H 1.09002 * 117.49980 * 359.97438 * 23 22 16 37 37 H 1.08997 * 117.49720 * 145.01691 * 23 22 16 38 38 H 1.09006 * 117.49543 * 214.97788 * 24 22 16 39 39 H 1.08997 * 117.49890 * 359.97438 * 24 22 16 40 40 H 1.07996 * 119.88007 * 179.70043 * 25 12 11 41 41 H 1.08004 * 120.12120 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0661 -4.7501 -1.1140 13 16 -0.7513 -6.2391 -1.5824 14 8 -0.4342 -7.2014 -0.5860 15 8 -2.0840 -5.8770 -1.9171 16 7 -0.0440 -6.7665 -2.9838 17 6 -0.5686 -6.3276 -4.2793 18 6 0.2248 -5.1132 -4.7659 19 6 -0.3144 -4.6621 -6.0989 20 8 -1.2388 -5.2511 -6.6073 21 8 0.2322 -3.6059 -6.7213 22 6 1.1062 -7.6721 -2.9281 23 6 1.8419 -7.9611 -4.2381 24 6 0.9623 -9.0391 -3.5999 25 6 -0.4093 -3.5310 -1.5721 26 6 0.2209 -2.3617 -1.2122 27 1 -0.4850 0.8400 0.0004 28 1 2.6932 -3.6962 0.7240 29 1 1.5479 -5.7624 0.0520 30 1 -0.4738 -7.1372 -5.0030 31 1 -1.6190 -6.0564 -4.1730 32 1 0.1300 -4.3036 -4.0424 33 1 1.2752 -5.3844 -4.8722 34 1 -0.1478 -3.3538 -7.5740 35 1 1.7025 -7.6192 -2.0171 36 1 1.4699 -7.4778 -5.1415 37 1 2.9221 -8.0988 -4.1889 38 1 1.4642 -9.8856 -3.1310 39 1 0.0117 -9.2649 -4.0829 40 1 -1.2776 -3.4988 -2.2134 41 1 -0.1509 -1.4131 -1.5705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:05 Heat of formation + Delta-G solvation = -125.900644 kcal Electronic energy + Delta-G solvation = -27828.013629 eV Core-core repulsion = 23800.271407 eV Total energy + Delta-G solvation = -4027.742222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31771 -38.30551 -37.63118 -36.66780 -36.18402 -35.18953 -34.10793 -33.89925 -30.53996 -30.29521 -29.51954 -25.87757 -24.98420 -22.46691 -21.75679 -21.52490 -21.19771 -20.72326 -18.66177 -18.04463 -17.71711 -17.53741 -16.99843 -16.40856 -16.04718 -15.68844 -15.50389 -14.84878 -14.45001 -14.21108 -13.63097 -13.52998 -13.44285 -13.23775 -12.84254 -12.50712 -12.44401 -12.23118 -11.85353 -11.72137 -11.62911 -11.59302 -11.51245 -11.47285 -11.38457 -11.26289 -11.10597 -10.98581 -10.89339 -10.63723 -10.46676 -10.33873 -9.80148 -9.62393 -9.53018 -8.67016 -8.00333 -7.76156 -7.18718 -4.84760 1.06382 2.16138 2.19720 2.83072 2.85695 2.88091 2.92248 2.94009 3.52418 3.63145 3.80670 4.19389 4.45984 4.62934 4.76247 4.83593 4.88628 4.99004 5.16797 5.23617 5.30862 5.39134 5.54040 5.57172 5.77074 5.80179 5.99847 6.00516 6.05599 6.07682 6.28533 6.44198 6.59251 6.63976 6.73863 6.92675 6.99746 7.28563 7.37190 7.57634 7.72070 7.83784 7.91828 8.26866 8.46441 8.59698 9.72535 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004125 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.351857 B = 6786.729030 C = 7995.106072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.237 4.237 11 C 0.003 3.997 12 C -0.788 4.788 13 S 2.688 3.312 14 O -0.975 6.975 15 O -0.977 6.977 16 N -0.975 5.975 17 C 0.129 3.871 18 C -0.145 4.145 19 C 0.487 3.513 20 O -0.520 6.520 21 O -0.514 6.514 22 C 0.094 3.906 23 C -0.188 4.188 24 C -0.194 4.194 25 C -0.019 4.019 26 C -0.180 4.180 27 H 0.290 0.710 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.408 0.592 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -6.547 -9.770 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.258 4.258 11 C -0.017 4.017 12 C -0.884 4.884 13 S 2.789 3.211 14 O -0.966 6.966 15 O -0.967 6.967 16 N -0.805 5.805 17 C 0.002 3.998 18 C -0.184 4.184 19 C 0.329 3.671 20 O -0.409 6.409 21 O -0.326 6.326 22 C -0.013 4.013 23 C -0.226 4.226 24 C -0.233 4.233 25 C -0.040 4.040 26 C -0.201 4.201 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.266 0.734 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.920 -7.139 -9.086 11.918 hybrid contribution 0.591 1.629 -0.613 1.838 sum 3.511 -5.509 -9.699 11.694 Atomic orbital electron populations 1.69828 1.07947 1.30412 1.30293 1.26154 0.94882 1.02198 0.91840 0.86109 0.81018 0.79861 0.79064 1.17944 1.19204 1.19491 1.19990 0.98548 0.91200 1.36249 0.89354 1.17851 0.90064 0.92156 0.86384 1.21016 1.04321 0.92729 1.07698 1.20133 0.91782 0.97382 0.92386 1.29156 1.18426 1.15257 1.25604 1.01522 0.73482 0.74336 0.71720 1.93485 1.85244 1.61231 1.56656 1.93492 1.34523 1.84956 1.83756 1.57533 1.43428 1.58648 1.20918 1.21038 0.98323 0.95124 0.85269 1.22040 1.03218 1.01456 0.91722 1.23406 0.79961 0.76740 0.86964 1.90719 1.28246 1.55166 1.66727 1.84584 1.61763 1.47425 1.38787 1.21353 0.90350 0.91491 0.98100 1.23361 0.98971 1.03433 0.96870 1.23397 1.01839 0.93356 1.04731 1.20222 0.95932 0.91815 0.95986 1.21341 0.99699 0.96859 1.02157 0.89915 0.88177 0.87876 0.89474 0.87765 0.86253 0.86757 0.73358 0.84624 0.88363 0.87977 0.88077 0.88548 0.88043 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.88 10.95 55.55 0.61 -17.27 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.56 29.59 -169.99 -5.03 11.53 16 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.43 -10.27 9.05 -37.74 -0.34 -10.61 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.14 3.39 5.57 -106.83 -0.60 2.80 16 10 C -0.24 -5.36 9.80 -38.87 -0.38 -5.74 16 11 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 12 C -0.79 -16.59 6.00 -39.29 -0.24 -16.83 16 13 S 2.69 51.21 5.69 -107.50 -0.61 50.59 16 14 O -0.98 -20.27 16.41 -57.17 -0.94 -21.20 16 15 O -0.98 -20.79 15.81 -57.17 -0.90 -21.69 16 16 N -0.97 -14.43 3.12 -107.30 -0.33 -14.77 16 17 C 0.13 1.75 4.24 -4.04 -0.02 1.73 16 18 C -0.15 -1.84 5.91 -27.88 -0.16 -2.01 16 19 C 0.49 6.17 8.33 36.01 0.30 6.47 16 20 O -0.52 -7.74 16.74 -18.75 -0.31 -8.06 16 21 O -0.51 -5.44 13.42 -39.26 -0.53 -5.96 16 22 C 0.09 1.19 6.10 -67.93 -0.41 0.77 16 23 C -0.19 -1.83 9.26 -26.69 -0.25 -2.07 16 24 C -0.19 -2.04 10.12 -26.69 -0.27 -2.31 16 25 C -0.02 -0.42 8.38 -39.66 -0.33 -0.76 16 26 C -0.18 -4.32 8.70 -38.87 -0.34 -4.66 16 27 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 28 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.10 1.96 7.60 -52.49 -0.40 1.56 16 30 H 0.09 1.03 6.52 -51.93 -0.34 0.69 16 31 H 0.10 1.57 6.87 -51.92 -0.36 1.22 16 32 H 0.12 1.70 6.99 -51.93 -0.36 1.34 16 33 H 0.11 1.24 6.95 -51.93 -0.36 0.87 16 34 H 0.41 2.46 9.10 45.56 0.41 2.87 16 35 H 0.14 1.69 7.98 -51.93 -0.41 1.27 16 36 H 0.10 0.92 5.74 -51.93 -0.30 0.62 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.10 2.09 7.60 -52.49 -0.40 1.70 16 41 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -30.90 359.26 -10.21 -41.12 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.07 Total: 12.30 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -3.50 Total: -32.00 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.27 Total: -32.04 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -2.68 Total: -56.92 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 16 Polarization: 51.21 SS G_CDS: -0.61 Total: 50.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.90 -10.21 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.783 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds