Wall clock time and date at job start Tue Mar 31 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38634 * 120.24846 * 359.42742 * 11 10 9 13 13 S 1.76200 * 119.75186 * 180.30382 * 12 11 10 14 14 O 1.42109 * 106.40056 * 23.83159 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.75305 * 13 12 11 16 16 N 1.65601 * 107.21684 * 270.29707 * 13 12 11 17 17 C 1.46501 * 119.99718 * 269.99829 * 16 13 12 18 18 C 1.52999 * 109.47239 * 94.99835 * 17 16 13 19 19 C 1.50706 * 109.46985 * 179.97438 * 18 17 16 20 20 O 1.20823 * 120.00020 * 0.02562 * 19 18 17 21 21 O 1.34232 * 119.99788 * 180.02562 * 19 18 17 22 22 C 1.46501 * 120.00325 * 89.99898 * 16 13 12 23 23 C 1.53002 * 117.49813 * 188.74838 * 22 16 13 24 24 C 1.52998 * 117.49859 * 120.08828 * 22 16 13 25 25 C 1.38637 * 120.50173 * 0.59671 * 12 11 10 26 26 C 1.37623 * 120.24324 * 359.68437 * 25 12 11 27 27 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 30 30 H 1.09003 * 109.47446 * 215.00054 * 17 16 13 31 31 H 1.09007 * 109.47095 * 334.99927 * 17 16 13 32 32 H 1.08994 * 109.47290 * 299.99912 * 18 17 16 33 33 H 1.08999 * 109.46972 * 60.00353 * 18 17 16 34 34 H 0.96696 * 117.00057 * 180.02562 * 21 19 18 35 35 H 1.08999 * 115.54951 * 334.41362 * 22 16 13 36 36 H 1.09002 * 117.49980 * 359.97438 * 23 22 16 37 37 H 1.08997 * 117.49720 * 145.01691 * 23 22 16 38 38 H 1.09006 * 117.49543 * 214.97788 * 24 22 16 39 39 H 1.08997 * 117.49890 * 359.97438 * 24 22 16 40 40 H 1.07996 * 119.88007 * 179.70043 * 25 12 11 41 41 H 1.08004 * 120.12120 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0661 -4.7501 -1.1140 13 16 -0.7513 -6.2391 -1.5824 14 8 -0.4342 -7.2014 -0.5860 15 8 -2.0840 -5.8770 -1.9171 16 7 -0.0440 -6.7665 -2.9838 17 6 -0.5686 -6.3276 -4.2793 18 6 0.2248 -5.1132 -4.7659 19 6 -0.3144 -4.6621 -6.0989 20 8 -1.2388 -5.2511 -6.6073 21 8 0.2322 -3.6059 -6.7213 22 6 1.1062 -7.6721 -2.9281 23 6 1.8419 -7.9611 -4.2381 24 6 0.9623 -9.0391 -3.5999 25 6 -0.4093 -3.5310 -1.5721 26 6 0.2209 -2.3617 -1.2122 27 1 -0.4850 0.8400 0.0004 28 1 2.6932 -3.6962 0.7240 29 1 1.5479 -5.7624 0.0520 30 1 -0.4738 -7.1372 -5.0030 31 1 -1.6190 -6.0564 -4.1730 32 1 0.1300 -4.3036 -4.0424 33 1 1.2752 -5.3844 -4.8722 34 1 -0.1478 -3.3538 -7.5740 35 1 1.7025 -7.6192 -2.0171 36 1 1.4699 -7.4778 -5.1415 37 1 2.9221 -8.0988 -4.1889 38 1 1.4642 -9.8856 -3.1310 39 1 0.0117 -9.2649 -4.0829 40 1 -1.2776 -3.4988 -2.2134 41 1 -0.1509 -1.4131 -1.5705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:04 Heat of formation + Delta-G solvation = -145.917579 kcal Electronic energy + Delta-G solvation = -27828.881628 eV Core-core repulsion = 23800.271407 eV Total energy + Delta-G solvation = -4028.610221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31860 -39.38900 -39.27077 -38.26871 -37.15027 -36.82418 -35.80591 -34.94095 -32.07413 -31.62323 -31.26538 -27.61897 -26.04103 -23.33232 -23.27435 -22.94291 -22.62846 -21.85163 -19.87851 -19.42635 -19.13801 -18.90741 -18.38358 -17.69132 -17.23824 -17.05437 -16.82027 -16.05344 -15.85616 -15.61418 -15.16489 -14.97436 -14.65339 -14.52406 -14.12563 -13.99147 -13.79547 -13.55069 -13.43873 -13.18503 -13.09284 -13.07678 -12.96694 -12.87277 -12.57300 -12.55266 -12.28272 -12.14991 -12.10974 -11.94724 -11.68000 -11.54153 -11.36235 -11.20447 -11.16525 -9.84354 -9.70200 -9.53476 -8.86735 -6.63831 -0.43975 0.48465 1.06676 1.16902 1.36862 1.42053 1.54084 1.87186 2.12168 2.28880 2.54206 2.82383 3.04261 3.40203 3.52235 3.69984 3.77152 3.94477 4.07790 4.13579 4.26229 4.30492 4.34039 4.36680 4.53483 4.74282 4.80322 4.88434 4.91713 4.95219 5.10200 5.12812 5.24201 5.26650 5.32872 5.52913 5.58399 5.60408 5.65449 5.79411 5.95124 6.16670 6.50324 6.69641 6.82183 6.98012 8.08212 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004125 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.351857 B = 6786.729030 C = 7995.106072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.113 3.887 10 C -0.253 4.253 11 C 0.002 3.998 12 C -0.793 4.793 13 S 2.714 3.286 14 O -0.992 6.992 15 O -1.002 7.002 16 N -0.964 5.964 17 C 0.127 3.873 18 C -0.144 4.144 19 C 0.495 3.505 20 O -0.545 6.545 21 O -0.512 6.512 22 C 0.056 3.944 23 C -0.165 4.165 24 C -0.188 4.188 25 C -0.019 4.019 26 C -0.203 4.203 27 H 0.298 0.702 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.428 0.572 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -7.235 -11.032 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.109 3.891 10 C -0.273 4.273 11 C -0.018 4.018 12 C -0.887 4.887 13 S 2.813 3.187 14 O -0.982 6.982 15 O -0.992 6.992 16 N -0.798 5.798 17 C 0.001 3.999 18 C -0.183 4.183 19 C 0.338 3.662 20 O -0.436 6.436 21 O -0.326 6.326 22 C -0.050 4.050 23 C -0.203 4.203 24 C -0.227 4.227 25 C -0.039 4.039 26 C -0.223 4.223 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.290 0.710 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.400 -7.801 -10.342 13.681 hybrid contribution 0.102 1.695 -0.309 1.726 sum 4.502 -6.106 -10.651 13.077 Atomic orbital electron populations 1.69869 1.09481 1.31801 1.31017 1.27016 0.95485 1.05265 0.90682 0.85022 0.79631 0.75190 0.79199 1.17425 1.18602 1.18937 1.20268 0.99010 0.92053 1.37653 0.88865 1.18187 0.90593 0.93309 0.86980 1.21242 1.05135 0.92721 1.08216 1.20414 0.91530 0.97984 0.91824 1.29574 1.17951 1.16137 1.25052 1.00672 0.72699 0.73250 0.72105 1.93455 1.85389 1.61118 1.58256 1.93457 1.36241 1.85222 1.84326 1.57053 1.44258 1.58700 1.19800 1.21127 0.97458 0.96360 0.84911 1.21988 1.04408 1.00466 0.91474 1.23257 0.79364 0.76766 0.86774 1.90716 1.29264 1.56143 1.67433 1.84536 1.61568 1.46390 1.40090 1.21668 0.90487 0.92800 1.00026 1.23481 1.00023 1.01666 0.95166 1.23507 1.02286 0.92961 1.03987 1.20346 0.95923 0.91883 0.95794 1.21327 1.00682 0.96954 1.03334 0.89101 0.86984 0.85590 0.87094 0.89591 0.88040 0.84540 0.70972 0.84752 0.87683 0.85874 0.86499 0.88587 0.87290 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.41 10.95 21.83 0.24 -38.17 16 2 C 0.03 1.58 5.14 85.26 0.44 2.02 16 3 Si 0.99 33.82 29.59 68.60 2.03 35.85 16 4 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 6 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 7 C -0.46 -22.47 9.05 23.46 0.21 -22.26 16 8 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.11 5.66 5.57 -21.29 -0.12 5.54 16 10 C -0.25 -11.58 9.80 22.73 0.22 -11.35 16 11 C 0.00 0.10 9.49 22.22 0.21 0.31 16 12 C -0.79 -33.57 6.00 22.46 0.13 -33.44 16 13 S 2.71 102.43 5.69 -56.49 -0.32 102.11 16 14 O -0.99 -40.45 16.41 -128.00 -2.10 -42.55 16 15 O -1.00 -42.88 15.81 -128.00 -2.02 -44.90 16 16 N -0.96 -27.33 3.12 -493.38 -1.54 -28.87 16 17 C 0.13 3.29 4.24 86.38 0.37 3.65 16 18 C -0.14 -3.48 5.91 29.85 0.18 -3.30 16 19 C 0.50 11.85 8.33 71.24 0.59 12.44 16 20 O -0.54 -15.57 16.74 21.97 0.37 -15.20 16 21 O -0.51 -9.92 13.42 -51.44 -0.69 -10.62 16 22 C 0.06 1.29 6.10 44.99 0.27 1.56 16 23 C -0.16 -2.62 9.26 30.62 0.28 -2.34 16 24 C -0.19 -3.38 10.12 30.62 0.31 -3.07 16 25 C -0.02 -0.88 8.38 22.22 0.19 -0.69 16 26 C -0.20 -10.08 8.70 22.73 0.20 -9.88 16 27 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 28 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.13 4.66 7.60 -2.91 -0.02 4.63 16 30 H 0.11 2.36 6.52 -2.39 -0.02 2.35 16 31 H 0.09 2.57 6.87 -2.38 -0.02 2.56 16 32 H 0.10 2.88 6.99 -2.39 -0.02 2.86 16 33 H 0.14 2.63 6.95 -2.39 -0.02 2.61 16 34 H 0.43 4.31 9.10 -74.06 -0.67 3.64 16 35 H 0.13 3.10 7.98 -2.39 -0.02 3.08 16 36 H 0.10 1.56 5.74 -2.39 -0.01 1.54 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.10 1.75 8.05 -2.39 -0.02 1.74 16 40 H 0.11 4.65 7.60 -2.91 -0.02 4.63 16 41 H 0.11 5.60 6.16 -2.91 -0.02 5.58 16 Total: -1.00 -67.29 359.26 -0.14 -67.43 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.41 Total: 35.75 kcal Atomic # 6 Polarization: -64.30 SS G_CDS: 3.49 Total: -60.82 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -1.30 Total: -67.05 kcal Atomic # 8 Polarization: -108.83 SS G_CDS: -4.45 Total: -113.27 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Atomic # 16 Polarization: 102.43 SS G_CDS: -0.32 Total: 102.11 kcal Total: -67.29 -0.14 -67.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.488 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds