Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 110.89241 * 2 1 4 4 O 1.20832 * 120.00231 * 242.42577 * 3 2 1 5 5 O 1.34232 * 120.00100 * 62.42552 * 3 2 1 6 6 C 1.55168 * 111.00205 * 123.88358 * 2 1 3 7 7 C 1.54320 * 102.94107 * 82.56900 * 6 2 1 8 8 N 1.47021 * 107.27350 * 22.19388 * 7 6 2 9 9 S 1.65607 * 125.64879 * 181.02433 * 8 7 6 10 10 O 1.42106 * 106.39940 * 336.48057 * 9 8 7 11 11 O 1.42093 * 106.40314 * 203.56426 * 9 8 7 12 12 C 1.76201 * 107.21920 * 90.01990 * 9 8 7 13 13 C 1.38635 * 119.75034 * 270.25686 * 12 9 8 14 14 C 1.37619 * 120.24352 * 180.25864 * 13 12 9 15 15 C 1.40711 * 119.74798 * 359.46791 * 14 13 12 16 16 C 1.41396 * 120.24787 * 180.29782 * 15 14 13 17 17 H 1.08005 * 119.99505 * 335.28837 * 16 15 14 18 18 C 1.39942 * 120.00083 * 155.28075 * 16 15 14 19 19 N 1.30817 * 120.00502 * 342.23482 * 18 16 15 20 20 Si 1.86807 * 119.99811 * 162.22853 * 18 16 15 21 21 H 1.48505 * 109.46906 * 94.66663 * 20 18 16 22 22 H 1.48499 * 109.47220 * 214.66572 * 20 18 16 23 23 H 1.48500 * 109.47278 * 334.66810 * 20 18 16 24 24 C 1.40719 * 119.50966 * 0.27391 * 15 14 13 25 25 C 1.37612 * 119.74521 * 0.02562 * 24 15 14 26 26 C 1.47421 * 108.70258 * 1.28391 * 8 7 6 27 27 H 1.09002 * 109.46749 * 297.57570 * 1 2 3 28 28 H 1.08998 * 109.46690 * 57.56872 * 1 2 3 29 29 H 1.08998 * 109.47452 * 177.57348 * 1 2 3 30 30 H 0.96693 * 116.99989 * 180.02562 * 5 3 2 31 31 H 1.08991 * 110.71676 * 324.20435 * 6 2 1 32 32 H 1.09000 * 110.71971 * 200.93319 * 6 2 1 33 33 H 1.09001 * 109.88185 * 262.77681 * 7 6 2 34 34 H 1.09002 * 109.88045 * 141.61345 * 7 6 2 35 35 H 1.07995 * 119.87697 * 0.02562 * 13 12 9 36 36 H 1.07999 * 120.12174 * 179.73950 * 14 13 12 37 37 H 0.97001 * 120.00527 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.12678 * 180.02562 * 24 15 14 39 39 H 1.08006 * 119.87565 * 179.97438 * 25 24 15 40 40 H 1.09004 * 110.36349 * 94.48939 * 26 8 7 41 41 H 1.09005 * 110.36612 * 216.80187 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4079 0.0000 4 8 2.7354 1.7996 -0.9276 5 8 1.8040 2.2268 1.0304 6 6 2.0861 -0.8076 1.2026 7 6 2.0284 -2.2644 0.6969 8 7 2.0138 -2.2162 -0.7725 9 16 1.9316 -3.5276 -1.7805 10 8 2.4257 -4.6349 -1.0393 11 8 2.4850 -3.1146 -3.0223 12 6 0.2252 -3.8501 -2.0787 13 6 -0.4709 -4.7040 -1.2371 14 6 -1.8025 -4.9672 -1.4638 15 6 -2.4601 -4.3572 -2.5479 16 6 -3.8297 -4.6152 -2.7869 17 1 -4.2761 -5.5327 -2.4326 18 6 -4.6067 -3.6818 -3.4821 19 7 -4.1903 -2.4480 -3.6078 20 14 -6.2385 -4.1976 -4.2309 21 1 -7.3383 -3.8877 -3.2824 22 1 -6.4564 -3.4582 -5.5002 23 1 -6.2180 -5.6569 -4.5054 24 6 -1.7448 -3.4880 -3.3924 25 6 -0.4123 -3.2442 -3.1504 26 6 2.0907 -0.8075 -1.2000 27 1 -0.3633 0.4757 0.9110 28 1 -0.3632 0.5511 -0.8674 29 1 -0.3634 -1.0267 -0.0435 30 1 2.1699 3.1207 0.9854 31 1 1.4523 -0.6785 2.0798 32 1 3.1133 -0.5157 1.4212 33 1 1.1216 -2.7476 1.0609 34 1 2.9061 -2.8114 1.0411 35 1 0.0347 -5.1673 -0.4028 36 1 -2.3418 -5.6360 -0.8094 37 1 -4.7287 -1.8011 -4.0900 38 1 -2.2398 -3.0141 -4.2272 39 1 0.1389 -2.5778 -3.7974 40 1 3.1252 -0.5273 -1.3986 41 1 1.4764 -0.6457 -2.0858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = -152.849246 kcal Electronic energy + Delta-G solvation = -27870.146126 eV Core-core repulsion = 23841.235325 eV Total energy + Delta-G solvation = -4028.910801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81087 -38.36506 -37.60401 -36.54779 -36.25648 -35.16838 -34.07319 -32.49176 -30.29113 -29.58163 -29.48374 -26.66828 -25.84060 -24.24832 -22.18991 -21.47277 -21.17155 -19.98158 -18.71671 -17.96080 -17.66245 -17.46006 -16.72894 -16.29433 -15.81169 -15.53897 -15.18189 -14.68986 -14.21637 -14.09608 -13.78850 -13.65867 -13.33851 -13.19999 -12.85181 -12.46418 -12.34716 -12.22410 -12.19077 -11.90996 -11.82223 -11.69205 -11.51648 -11.43101 -11.33052 -11.27565 -11.22971 -11.07500 -10.94465 -10.92274 -10.45983 -10.42335 -9.79382 -9.65068 -9.53104 -8.70766 -7.98696 -7.73877 -7.18134 -4.83352 1.10225 2.03039 2.22241 2.79060 2.85150 2.87250 2.89750 2.94110 3.61829 3.64063 4.10101 4.22773 4.34528 4.53294 4.70994 4.93433 5.09194 5.18962 5.23595 5.35054 5.55808 5.56678 5.69911 5.80975 5.82860 5.88334 5.92977 6.02527 6.08104 6.23651 6.27098 6.31023 6.50768 6.64881 6.71258 6.93410 7.01544 7.30721 7.39027 7.60342 7.71463 7.73747 7.93438 8.28598 8.47933 8.61575 9.73282 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003811 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.857401 B = 7346.208673 C = 8585.285000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.497 3.503 4 O -0.511 6.511 5 O -0.512 6.512 6 C -0.111 4.111 7 C 0.123 3.877 8 N -1.016 6.016 9 S 2.705 3.295 10 O -0.978 6.978 11 O -0.976 6.976 12 C -0.786 4.786 13 C 0.002 3.998 14 C -0.238 4.238 15 C 0.140 3.860 16 C -0.434 4.434 17 H 0.088 0.912 18 C 0.073 3.927 19 N -0.765 5.765 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.182 4.182 25 C -0.015 4.015 26 C 0.147 3.853 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.408 0.592 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.289 0.711 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 7.510 8.679 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C 0.339 3.661 4 O -0.398 6.398 5 O -0.323 6.323 6 C -0.150 4.150 7 C -0.003 4.003 8 N -0.851 5.851 9 S 2.806 3.194 10 O -0.969 6.969 11 O -0.967 6.967 12 C -0.882 4.882 13 C -0.018 4.018 14 C -0.258 4.258 15 C 0.136 3.864 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.149 4.149 19 N -0.387 5.387 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.202 4.202 25 C -0.035 4.035 26 C 0.021 3.979 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.837 6.943 7.983 12.083 hybrid contribution -1.325 0.733 -0.310 1.546 sum 4.512 7.676 7.673 11.754 Atomic orbital electron populations 1.21778 0.89681 1.04909 1.02988 1.21716 0.98797 0.87440 0.98997 1.23116 0.76456 0.87708 0.78858 1.90742 1.36818 1.76412 1.35816 1.84542 1.72976 1.28389 1.46423 1.22720 1.01938 0.93718 0.96613 1.21640 1.02429 0.96535 0.79681 1.58964 1.90505 1.19253 1.16382 1.01016 0.75389 0.71191 0.71825 1.93479 1.80522 1.49863 1.73035 1.93493 1.78576 1.82469 1.42135 1.29206 1.23515 1.22335 1.13190 1.20152 0.93968 0.92732 0.94975 1.21043 0.94779 1.08845 1.01180 1.17845 0.92699 0.87813 0.88000 1.19954 0.94107 1.03847 1.28254 0.89423 1.26123 1.01003 0.94047 0.93746 1.69806 1.37638 1.02670 1.28626 0.86160 0.80217 0.80614 0.79157 1.19097 1.19561 1.17970 1.21320 0.92585 1.04442 1.01854 1.20248 0.94778 0.95036 0.93485 1.21787 1.01631 0.79302 0.95169 0.91126 0.91554 0.89545 0.73314 0.88746 0.90319 0.90857 0.90838 0.87843 0.88203 0.89973 0.86033 0.87971 0.90286 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.57 37.16 0.32 -1.31 16 2 C -0.07 -0.79 0.89 -153.39 -0.14 -0.93 16 3 C 0.50 5.76 6.98 36.00 0.25 6.01 16 4 O -0.51 -7.42 16.57 -18.75 -0.31 -7.73 16 5 O -0.51 -4.31 13.40 -39.26 -0.53 -4.83 16 6 C -0.11 -1.10 5.89 -24.89 -0.15 -1.24 16 7 C 0.12 1.51 6.65 -3.07 -0.02 1.49 16 8 N -1.02 -15.78 3.68 -111.29 -0.41 -16.19 16 9 S 2.70 52.57 5.93 -107.50 -0.64 51.93 16 10 O -0.98 -20.46 16.85 -57.17 -0.96 -21.42 16 11 O -0.98 -21.21 16.84 -57.17 -0.96 -22.17 16 12 C -0.79 -16.93 6.00 -39.29 -0.24 -17.17 16 13 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 14 C -0.24 -5.45 9.80 -38.87 -0.38 -5.83 16 15 C 0.14 3.46 5.57 -106.82 -0.60 2.86 16 16 C -0.43 -10.41 9.05 -37.74 -0.34 -10.75 16 17 H 0.09 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.07 1.64 5.14 -17.35 -0.09 1.55 16 19 N -0.77 -17.70 10.97 55.55 0.61 -17.09 16 20 Si 0.92 16.68 29.59 -169.99 -5.03 11.65 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 24 C -0.18 -4.44 8.70 -38.87 -0.34 -4.78 16 25 C -0.02 -0.34 9.49 -39.66 -0.38 -0.72 16 26 C 0.15 2.13 5.51 -2.41 -0.01 2.12 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 30 H 0.41 1.71 9.10 45.56 0.41 2.12 16 31 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 32 H 0.08 0.69 8.03 -51.93 -0.42 0.28 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 2.00 7.60 -52.49 -0.40 1.61 16 36 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 38 H 0.12 3.02 6.18 -52.48 -0.32 2.70 16 39 H 0.10 2.18 7.60 -52.48 -0.40 1.78 16 40 H 0.08 1.14 7.53 -51.93 -0.39 0.75 16 41 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -31.13 359.75 -9.72 -40.85 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.42 Total: 8.60 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.48 Total: -29.03 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.20 Total: -33.27 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -2.76 Total: -56.15 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.64 Total: 51.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.13 -9.72 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.000 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds