Wall clock time and date at job start Tue Mar 31 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 110.89241 * 2 1 4 4 O 1.20832 * 120.00231 * 242.42577 * 3 2 1 5 5 O 1.34232 * 120.00100 * 62.42552 * 3 2 1 6 6 C 1.55168 * 111.00205 * 123.88358 * 2 1 3 7 7 C 1.54320 * 102.94107 * 82.56900 * 6 2 1 8 8 N 1.47021 * 107.27350 * 22.19388 * 7 6 2 9 9 S 1.65607 * 125.64879 * 181.02433 * 8 7 6 10 10 O 1.42106 * 106.39940 * 336.48057 * 9 8 7 11 11 O 1.42093 * 106.40314 * 203.56426 * 9 8 7 12 12 C 1.76201 * 107.21920 * 90.01990 * 9 8 7 13 13 C 1.38635 * 119.75034 * 270.25686 * 12 9 8 14 14 C 1.37619 * 120.24352 * 180.25864 * 13 12 9 15 15 C 1.40711 * 119.74798 * 359.46791 * 14 13 12 16 16 C 1.41396 * 120.24787 * 180.29782 * 15 14 13 17 17 H 1.08005 * 119.99505 * 335.28837 * 16 15 14 18 18 C 1.39942 * 120.00083 * 155.28075 * 16 15 14 19 19 N 1.30817 * 120.00502 * 342.23482 * 18 16 15 20 20 Si 1.86807 * 119.99811 * 162.22853 * 18 16 15 21 21 H 1.48505 * 109.46906 * 94.66663 * 20 18 16 22 22 H 1.48499 * 109.47220 * 214.66572 * 20 18 16 23 23 H 1.48500 * 109.47278 * 334.66810 * 20 18 16 24 24 C 1.40719 * 119.50966 * 0.27391 * 15 14 13 25 25 C 1.37612 * 119.74521 * 0.02562 * 24 15 14 26 26 C 1.47421 * 108.70258 * 1.28391 * 8 7 6 27 27 H 1.09002 * 109.46749 * 297.57570 * 1 2 3 28 28 H 1.08998 * 109.46690 * 57.56872 * 1 2 3 29 29 H 1.08998 * 109.47452 * 177.57348 * 1 2 3 30 30 H 0.96693 * 116.99989 * 180.02562 * 5 3 2 31 31 H 1.08991 * 110.71676 * 324.20435 * 6 2 1 32 32 H 1.09000 * 110.71971 * 200.93319 * 6 2 1 33 33 H 1.09001 * 109.88185 * 262.77681 * 7 6 2 34 34 H 1.09002 * 109.88045 * 141.61345 * 7 6 2 35 35 H 1.07995 * 119.87697 * 0.02562 * 13 12 9 36 36 H 1.07999 * 120.12174 * 179.73950 * 14 13 12 37 37 H 0.97001 * 120.00527 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.12678 * 180.02562 * 24 15 14 39 39 H 1.08006 * 119.87565 * 179.97438 * 25 24 15 40 40 H 1.09004 * 110.36349 * 94.48939 * 26 8 7 41 41 H 1.09005 * 110.36612 * 216.80187 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4079 0.0000 4 8 2.7354 1.7996 -0.9276 5 8 1.8040 2.2268 1.0304 6 6 2.0861 -0.8076 1.2026 7 6 2.0284 -2.2644 0.6969 8 7 2.0138 -2.2162 -0.7725 9 16 1.9316 -3.5276 -1.7805 10 8 2.4257 -4.6349 -1.0393 11 8 2.4850 -3.1146 -3.0223 12 6 0.2252 -3.8501 -2.0787 13 6 -0.4709 -4.7040 -1.2371 14 6 -1.8025 -4.9672 -1.4638 15 6 -2.4601 -4.3572 -2.5479 16 6 -3.8297 -4.6152 -2.7869 17 1 -4.2761 -5.5327 -2.4326 18 6 -4.6067 -3.6818 -3.4821 19 7 -4.1903 -2.4480 -3.6078 20 14 -6.2385 -4.1976 -4.2309 21 1 -7.3383 -3.8877 -3.2824 22 1 -6.4564 -3.4582 -5.5002 23 1 -6.2180 -5.6569 -4.5054 24 6 -1.7448 -3.4880 -3.3924 25 6 -0.4123 -3.2442 -3.1504 26 6 2.0907 -0.8075 -1.2000 27 1 -0.3633 0.4757 0.9110 28 1 -0.3632 0.5511 -0.8674 29 1 -0.3634 -1.0267 -0.0435 30 1 2.1699 3.1207 0.9854 31 1 1.4523 -0.6785 2.0798 32 1 3.1133 -0.5157 1.4212 33 1 1.1216 -2.7476 1.0609 34 1 2.9061 -2.8114 1.0411 35 1 0.0347 -5.1673 -0.4028 36 1 -2.3418 -5.6360 -0.8094 37 1 -4.7287 -1.8011 -4.0900 38 1 -2.2398 -3.0141 -4.2272 39 1 0.1389 -2.5778 -3.7974 40 1 3.1252 -0.5273 -1.3986 41 1 1.4764 -0.6457 -2.0858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:55 Heat of formation + Delta-G solvation = -173.862660 kcal Electronic energy + Delta-G solvation = -27871.057336 eV Core-core repulsion = 23841.235325 eV Total energy + Delta-G solvation = -4029.822011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73623 -39.39611 -39.34548 -38.20925 -37.10284 -36.83995 -35.80397 -33.58678 -32.06736 -31.29626 -30.54438 -27.73973 -27.57314 -25.24371 -23.39620 -23.03982 -22.94605 -20.90741 -20.06983 -19.42401 -19.03041 -18.72644 -18.27190 -17.42681 -17.18159 -16.86256 -16.54489 -15.86281 -15.76633 -15.29408 -15.10349 -14.95514 -14.80063 -14.61276 -14.10103 -13.99591 -13.82589 -13.58606 -13.37882 -13.22761 -13.17980 -13.08037 -12.92262 -12.89856 -12.88028 -12.59785 -12.56629 -12.50824 -12.06574 -12.01681 -11.83401 -11.55855 -11.38644 -11.33460 -11.21799 -9.98455 -9.76399 -9.55073 -8.87538 -6.64464 -0.44673 0.48189 1.06429 1.13320 1.36075 1.41988 1.52551 1.89825 2.11304 2.24916 2.53761 2.90430 3.08177 3.32250 3.53922 3.64218 3.77585 4.17644 4.21499 4.29250 4.33102 4.37587 4.46648 4.64882 4.71377 4.79622 4.86933 4.87308 4.92613 4.98784 5.03181 5.08662 5.14027 5.23744 5.30118 5.42274 5.53388 5.57428 5.59944 5.77766 5.93771 6.15357 6.49151 6.68487 6.81063 6.97639 8.07384 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003811 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.857401 B = 7346.208673 C = 8585.285000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C 0.508 3.492 4 O -0.546 6.546 5 O -0.499 6.499 6 C -0.098 4.098 7 C 0.109 3.891 8 N -1.013 6.013 9 S 2.733 3.267 10 O -0.990 6.990 11 O -1.001 7.001 12 C -0.794 4.794 13 C 0.002 3.998 14 C -0.253 4.253 15 C 0.114 3.886 16 C -0.465 4.465 17 H 0.092 0.908 18 C 0.037 3.963 19 N -0.794 5.794 20 Si 0.988 3.012 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.256 1.256 24 C -0.205 4.205 25 C -0.020 4.020 26 C 0.138 3.862 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.430 0.570 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.298 0.702 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 8.196 10.612 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C 0.351 3.649 4 O -0.436 6.436 5 O -0.312 6.312 6 C -0.137 4.137 7 C -0.016 4.016 8 N -0.850 5.850 9 S 2.832 3.168 10 O -0.980 6.980 11 O -0.992 6.992 12 C -0.888 4.888 13 C -0.018 4.018 14 C -0.274 4.274 15 C 0.110 3.890 16 C -0.492 4.492 17 H 0.110 0.890 18 C -0.183 4.183 19 N -0.417 5.417 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.189 1.189 23 H -0.180 1.180 24 C -0.225 4.225 25 C -0.041 4.041 26 C 0.012 3.988 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.292 0.708 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.729 7.634 9.939 13.779 hybrid contribution -1.180 0.620 -0.820 1.565 sum 4.550 8.254 9.118 13.113 Atomic orbital electron populations 1.21744 0.89829 1.03791 1.03704 1.21605 0.98525 0.87980 0.98613 1.22872 0.75593 0.87681 0.78778 1.90744 1.38551 1.77030 1.37259 1.84476 1.72491 1.29573 1.44638 1.22769 1.03497 0.91126 0.96313 1.22025 1.03439 0.98782 0.77321 1.58546 1.89946 1.18748 1.17805 1.00052 0.73991 0.71325 0.71417 1.93456 1.80244 1.51188 1.73156 1.93456 1.78599 1.83010 1.44168 1.29616 1.24826 1.21778 1.12561 1.20434 0.93676 0.92261 0.95436 1.21271 0.95627 1.09311 1.01151 1.18174 0.93568 0.88478 0.88765 1.20241 0.94346 1.04661 1.29906 0.88972 1.26959 1.04306 0.93616 0.93403 1.69837 1.39214 1.03668 1.28974 0.85089 0.75769 0.79996 0.78423 1.18078 1.18911 1.17976 1.21308 0.93389 1.05630 1.02176 1.20387 0.94458 0.95144 0.94065 1.21895 1.01639 0.79056 0.96186 0.88697 0.92761 0.91369 0.70828 0.85919 0.88645 0.90194 0.89606 0.85436 0.86863 0.89074 0.87348 0.87421 0.90263 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.57 71.98 0.62 -2.39 16 2 C -0.06 -1.41 0.89 -51.46 -0.05 -1.45 16 3 C 0.51 10.68 6.98 71.23 0.50 11.18 16 4 O -0.55 -15.25 16.57 21.95 0.36 -14.88 16 5 O -0.50 -6.70 13.40 -51.44 -0.69 -7.39 16 6 C -0.10 -1.61 5.89 31.79 0.19 -1.42 16 7 C 0.11 2.41 6.65 86.73 0.58 2.99 16 8 N -1.01 -30.48 3.68 -506.02 -1.86 -32.34 16 9 S 2.73 105.38 5.93 -56.49 -0.34 105.05 16 10 O -0.99 -40.26 16.85 -128.00 -2.16 -42.42 16 11 O -1.00 -43.88 16.84 -128.00 -2.16 -46.03 16 12 C -0.79 -34.51 6.00 22.46 0.13 -34.38 16 13 C 0.00 0.08 9.49 22.22 0.21 0.29 16 14 C -0.25 -11.74 9.80 22.73 0.22 -11.52 16 15 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 16 C -0.46 -22.79 9.05 23.46 0.21 -22.58 16 17 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 18 C 0.04 1.67 5.14 85.26 0.44 2.11 16 19 N -0.79 -37.55 10.97 21.82 0.24 -37.31 16 20 Si 0.99 34.00 29.59 68.60 2.03 36.03 16 21 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 C -0.20 -10.43 8.70 22.73 0.20 -10.23 16 25 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 26 C 0.14 3.94 5.51 86.93 0.48 4.42 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.80 7.89 -2.39 -0.02 1.78 16 30 H 0.43 2.13 9.10 -74.06 -0.67 1.46 16 31 H 0.12 1.39 8.04 -2.39 -0.02 1.37 16 32 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.13 4.77 7.60 -2.91 -0.02 4.75 16 36 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 38 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 39 H 0.11 4.80 7.60 -2.91 -0.02 4.78 16 40 H 0.08 2.26 7.53 -2.39 -0.02 2.25 16 41 H 0.07 2.21 8.06 -2.38 -0.02 2.19 16 Total: -1.00 -68.19 359.75 -0.35 -68.54 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.40 Total: 28.84 kcal Atomic # 6 Polarization: -61.91 SS G_CDS: 3.82 Total: -58.08 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.62 Total: -69.65 kcal Atomic # 8 Polarization: -106.08 SS G_CDS: -4.64 Total: -110.72 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Atomic # 16 Polarization: 105.38 SS G_CDS: -0.34 Total: 105.05 kcal Total: -68.19 -0.35 -68.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.320 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds