Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.87343 * 2 1 4 4 O 1.20823 * 120.00298 * 23.98351 * 3 2 1 5 5 O 1.34231 * 119.99918 * 203.98480 * 3 2 1 6 6 C 1.54330 * 109.88339 * 121.17380 * 2 1 3 7 7 C 1.55152 * 102.94245 * 97.22252 * 6 2 1 8 8 C 1.54699 * 101.67608 * 35.33836 * 7 6 2 9 9 N 1.47020 * 109.88575 * 238.98087 * 2 1 3 10 10 S 1.65603 * 125.64520 * 59.48708 * 9 2 1 11 11 O 1.42103 * 106.40141 * 336.46204 * 10 9 2 12 12 O 1.42103 * 106.40158 * 203.54538 * 10 9 2 13 13 C 1.76195 * 107.21865 * 90.00151 * 10 9 2 14 14 C 1.38640 * 119.75010 * 270.25263 * 13 10 9 15 15 C 1.37618 * 120.24530 * 180.25862 * 14 13 10 16 16 C 1.40707 * 119.74644 * 359.46892 * 15 14 13 17 17 C 1.41397 * 120.24392 * 180.30011 * 16 15 14 18 18 H 1.08001 * 119.99831 * 335.16330 * 17 16 15 19 19 C 1.39943 * 120.00258 * 155.16863 * 17 16 15 20 20 N 1.30823 * 119.99727 * 342.35031 * 19 17 16 21 21 Si 1.86803 * 120.00463 * 162.34948 * 19 17 16 22 22 H 1.48501 * 109.47062 * 89.99633 * 21 19 17 23 23 H 1.48491 * 109.47485 * 210.00082 * 21 19 17 24 24 H 1.48504 * 109.46666 * 330.00090 * 21 19 17 25 25 C 1.40712 * 119.51609 * 0.27415 * 16 15 14 26 26 C 1.37625 * 119.74175 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46768 * 181.01723 * 1 2 3 28 28 H 1.09004 * 109.47038 * 301.01543 * 1 2 3 29 29 H 1.09003 * 109.46981 * 61.01777 * 1 2 3 30 30 H 0.96705 * 117.00087 * 180.02562 * 5 3 2 31 31 H 1.08996 * 110.72106 * 215.59103 * 6 2 1 32 32 H 1.09004 * 110.71687 * 338.86334 * 6 2 1 33 33 H 1.09001 * 111.00298 * 153.57348 * 7 6 2 34 34 H 1.08999 * 111.00661 * 277.39424 * 7 6 2 35 35 H 1.09001 * 110.38973 * 204.36022 * 8 7 6 36 36 H 1.08997 * 110.23237 * 82.10896 * 8 7 6 37 37 H 1.08004 * 119.87300 * 0.02562 * 14 13 10 38 38 H 1.08005 * 120.12416 * 179.74355 * 15 14 13 39 39 H 0.97010 * 119.99754 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.13284 * 180.02562 * 25 16 15 41 41 H 1.07997 * 119.87707 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 8 1.3486 2.3104 0.4253 5 8 3.2693 1.6874 -0.4725 6 6 2.0549 -0.7512 1.2417 7 6 2.3518 -2.1704 0.6895 8 6 2.8523 -1.8520 -0.7392 9 7 2.0301 -0.7125 -1.1848 10 16 1.7158 -0.3063 -2.7592 11 8 0.5054 0.4381 -2.7476 12 8 1.8916 -1.4921 -3.5223 13 6 2.9803 0.8080 -3.2728 14 6 2.8087 2.1723 -3.0955 15 6 3.7874 3.0521 -3.4977 16 6 4.9704 2.5617 -4.0806 17 6 5.9856 3.4558 -4.4918 18 1 5.7373 4.4769 -4.7414 19 6 7.3121 3.0179 -4.5756 20 7 7.6790 1.9220 -3.9625 21 14 8.5589 3.9980 -5.5627 22 1 9.2073 5.0030 -4.6826 23 1 9.5900 3.0796 -6.1090 24 1 7.8702 4.6906 -6.6814 25 6 5.1361 1.1747 -4.2507 26 6 4.1414 0.3137 -3.8467 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8808 29 1 -0.3633 0.4980 -0.8990 30 1 3.5543 2.6113 -0.4516 31 1 2.9656 -0.2854 1.6179 32 1 1.2918 -0.7918 2.0190 33 1 3.1270 -2.6636 1.2760 34 1 1.4453 -2.7747 0.6572 35 1 2.6998 -2.7093 -1.3949 36 1 3.9059 -1.5736 -0.7163 37 1 1.9018 2.5461 -2.6434 38 1 3.6499 4.1148 -3.3624 39 1 8.5985 1.6182 -4.0209 40 1 6.0402 0.7874 -4.6966 41 1 4.2664 -0.7512 -3.9759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = -142.894006 kcal Electronic energy + Delta-G solvation = -29017.154330 eV Core-core repulsion = 24988.675220 eV Total energy + Delta-G solvation = -4028.479109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53169 -38.16848 -37.57676 -36.62787 -35.82230 -35.22684 -34.04478 -31.41225 -30.97768 -30.26349 -29.48528 -26.20865 -25.78823 -23.82156 -21.84296 -21.54028 -21.11046 -20.42579 -18.76594 -17.77555 -17.59785 -17.29762 -16.73694 -15.93788 -15.65539 -15.47052 -15.16196 -14.69060 -14.15436 -13.74504 -13.57689 -13.43104 -13.25284 -13.17296 -12.76022 -12.63315 -12.42035 -12.19911 -12.10984 -11.82203 -11.69944 -11.49784 -11.44121 -11.34571 -11.29861 -11.23985 -11.10580 -11.02234 -10.86783 -10.68092 -10.43650 -10.31746 -9.77922 -9.63923 -9.50612 -8.82520 -7.95154 -7.68980 -7.15719 -4.80991 1.05580 2.23410 2.33631 2.86022 2.88099 2.91163 2.94920 3.19210 3.51464 3.65226 4.21280 4.32508 4.43848 4.50783 4.74712 4.99191 5.06091 5.27980 5.37379 5.47253 5.53559 5.60676 5.70992 5.73642 5.82608 5.88018 6.00417 6.08995 6.11025 6.21514 6.44753 6.48242 6.66382 6.71459 6.79084 6.94165 7.04054 7.32587 7.40682 7.62501 7.75632 7.95545 8.15872 8.30970 8.50345 8.64112 9.75577 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.004056 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.975853 B = 6900.895204 C = 7100.095543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.197 3.803 3 C 0.464 3.536 4 O -0.513 6.513 5 O -0.486 6.486 6 C -0.115 4.115 7 C -0.125 4.125 8 C 0.115 3.885 9 N -0.999 5.999 10 S 2.694 3.306 11 O -0.976 6.976 12 O -0.975 6.975 13 C -0.771 4.771 14 C 0.012 3.988 15 C -0.241 4.241 16 C 0.143 3.857 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.765 5.765 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.180 4.180 26 C -0.011 4.011 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.409 0.591 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.288 0.712 40 H 0.121 0.879 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -5.844 9.050 11.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.107 3.893 3 C 0.304 3.696 4 O -0.401 6.401 5 O -0.296 6.296 6 C -0.153 4.153 7 C -0.164 4.164 8 C -0.010 4.010 9 N -0.834 5.834 10 S 2.797 3.203 11 O -0.967 6.967 12 O -0.966 6.966 13 C -0.868 4.868 14 C -0.008 4.008 15 C -0.261 4.261 16 C 0.139 3.861 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.388 5.388 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.201 4.201 26 C -0.032 4.032 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.269 0.731 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.621 -6.509 8.652 11.772 hybrid contribution 1.596 1.554 -0.253 2.242 sum -3.025 -4.955 8.399 10.210 Atomic orbital electron populations 1.22463 0.90749 1.03583 1.06091 1.20472 0.95326 0.85308 0.88215 1.23950 0.79734 0.92173 0.73729 1.90682 1.57806 1.47717 1.43863 1.84731 1.32582 1.36698 1.75584 1.22706 1.02168 0.95593 0.94877 1.22740 1.02118 0.95881 0.95613 1.22009 0.95296 0.88214 0.95438 1.59072 1.64528 1.38797 1.21040 1.01261 0.74540 0.73743 0.70725 1.93453 1.44312 1.73326 1.85644 1.93484 1.87608 1.48074 1.67472 1.29014 1.18737 1.08021 1.30999 1.20026 0.95705 0.91494 0.93606 1.20990 0.97412 0.97492 1.10249 1.17802 0.90814 0.92635 0.84808 1.19924 0.91389 0.98603 1.36451 0.89538 1.26110 1.00156 0.95049 0.93562 1.69819 1.19848 1.19560 1.29535 0.86184 0.79317 0.80094 0.80617 1.19067 1.19652 1.18047 1.21290 0.98973 0.93389 1.06405 1.20194 0.91425 0.97752 0.93820 0.90818 0.90377 0.88271 0.73134 0.89911 0.89161 0.89486 0.90330 0.89645 0.90793 0.88696 0.88370 0.90032 0.86105 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 7.87 37.16 0.29 -2.06 16 2 C 0.20 2.82 0.86 -131.99 -0.11 2.71 16 3 C 0.46 7.62 6.50 36.01 0.23 7.86 16 4 O -0.51 -9.37 16.86 -18.75 -0.32 -9.68 16 5 O -0.49 -7.95 10.09 -39.26 -0.40 -8.35 16 6 C -0.11 -1.18 6.02 -24.90 -0.15 -1.33 16 7 C -0.12 -1.13 7.07 -24.70 -0.17 -1.31 16 8 C 0.12 1.46 7.09 -2.64 -0.02 1.44 16 9 N -1.00 -15.75 2.89 -99.00 -0.29 -16.04 16 10 S 2.69 53.24 5.60 -107.50 -0.60 52.64 16 11 O -0.98 -20.67 14.26 -57.17 -0.82 -21.48 16 12 O -0.98 -20.90 16.58 -57.17 -0.95 -21.85 16 13 C -0.77 -16.83 5.28 -39.29 -0.21 -17.04 16 14 C 0.01 0.26 7.02 -39.66 -0.28 -0.02 16 15 C -0.24 -5.49 9.80 -38.88 -0.38 -5.87 16 16 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 17 C -0.44 -10.45 9.05 -37.74 -0.34 -10.79 16 18 H 0.09 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 20 N -0.77 -17.72 10.97 55.55 0.61 -17.11 16 21 Si 0.91 16.76 29.59 -169.99 -5.03 11.73 16 22 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 25 C -0.18 -4.40 8.70 -38.87 -0.34 -4.74 16 26 C -0.01 -0.26 9.49 -39.66 -0.38 -0.64 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 29 H 0.10 1.66 5.60 -51.93 -0.29 1.37 16 30 H 0.41 5.83 9.04 45.56 0.41 6.24 16 31 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 32 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.05 7.78 -51.93 -0.40 0.65 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 2.00 7.51 -52.48 -0.39 1.60 16 38 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 39 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 40 H 0.12 3.00 6.18 -52.49 -0.32 2.68 16 41 H 0.10 2.15 7.60 -52.49 -0.40 1.75 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -30.23 347.70 -9.37 -39.60 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.29 Total: 12.61 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -2.54 Total: -27.30 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.32 Total: -33.15 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -2.48 Total: -61.36 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.60 Total: 52.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.23 -9.37 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.293 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds