Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.87343 * 2 1 4 4 O 1.20823 * 120.00298 * 23.98351 * 3 2 1 5 5 O 1.34231 * 119.99918 * 203.98480 * 3 2 1 6 6 C 1.54330 * 109.88339 * 121.17380 * 2 1 3 7 7 C 1.55152 * 102.94245 * 97.22252 * 6 2 1 8 8 C 1.54699 * 101.67608 * 35.33836 * 7 6 2 9 9 N 1.47020 * 109.88575 * 238.98087 * 2 1 3 10 10 S 1.65603 * 125.64520 * 59.48708 * 9 2 1 11 11 O 1.42103 * 106.40141 * 336.46204 * 10 9 2 12 12 O 1.42103 * 106.40158 * 203.54538 * 10 9 2 13 13 C 1.76195 * 107.21865 * 90.00151 * 10 9 2 14 14 C 1.38640 * 119.75010 * 270.25263 * 13 10 9 15 15 C 1.37618 * 120.24530 * 180.25862 * 14 13 10 16 16 C 1.40707 * 119.74644 * 359.46892 * 15 14 13 17 17 C 1.41397 * 120.24392 * 180.30011 * 16 15 14 18 18 H 1.08001 * 119.99831 * 335.16330 * 17 16 15 19 19 C 1.39943 * 120.00258 * 155.16863 * 17 16 15 20 20 N 1.30823 * 119.99727 * 342.35031 * 19 17 16 21 21 Si 1.86803 * 120.00463 * 162.34948 * 19 17 16 22 22 H 1.48501 * 109.47062 * 89.99633 * 21 19 17 23 23 H 1.48491 * 109.47485 * 210.00082 * 21 19 17 24 24 H 1.48504 * 109.46666 * 330.00090 * 21 19 17 25 25 C 1.40712 * 119.51609 * 0.27415 * 16 15 14 26 26 C 1.37625 * 119.74175 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46768 * 181.01723 * 1 2 3 28 28 H 1.09004 * 109.47038 * 301.01543 * 1 2 3 29 29 H 1.09003 * 109.46981 * 61.01777 * 1 2 3 30 30 H 0.96705 * 117.00087 * 180.02562 * 5 3 2 31 31 H 1.08996 * 110.72106 * 215.59103 * 6 2 1 32 32 H 1.09004 * 110.71687 * 338.86334 * 6 2 1 33 33 H 1.09001 * 111.00298 * 153.57348 * 7 6 2 34 34 H 1.08999 * 111.00661 * 277.39424 * 7 6 2 35 35 H 1.09001 * 110.38973 * 204.36022 * 8 7 6 36 36 H 1.08997 * 110.23237 * 82.10896 * 8 7 6 37 37 H 1.08004 * 119.87300 * 0.02562 * 14 13 10 38 38 H 1.08005 * 120.12416 * 179.74355 * 15 14 13 39 39 H 0.97010 * 119.99754 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.13284 * 180.02562 * 25 16 15 41 41 H 1.07997 * 119.87707 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 8 1.3486 2.3104 0.4253 5 8 3.2693 1.6874 -0.4725 6 6 2.0549 -0.7512 1.2417 7 6 2.3518 -2.1704 0.6895 8 6 2.8523 -1.8520 -0.7392 9 7 2.0301 -0.7125 -1.1848 10 16 1.7158 -0.3063 -2.7592 11 8 0.5054 0.4381 -2.7476 12 8 1.8916 -1.4921 -3.5223 13 6 2.9803 0.8080 -3.2728 14 6 2.8087 2.1723 -3.0955 15 6 3.7874 3.0521 -3.4977 16 6 4.9704 2.5617 -4.0806 17 6 5.9856 3.4558 -4.4918 18 1 5.7373 4.4769 -4.7414 19 6 7.3121 3.0179 -4.5756 20 7 7.6790 1.9220 -3.9625 21 14 8.5589 3.9980 -5.5627 22 1 9.2073 5.0030 -4.6826 23 1 9.5900 3.0796 -6.1090 24 1 7.8702 4.6906 -6.6814 25 6 5.1361 1.1747 -4.2507 26 6 4.1414 0.3137 -3.8467 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8808 29 1 -0.3633 0.4980 -0.8990 30 1 3.5543 2.6113 -0.4516 31 1 2.9656 -0.2854 1.6179 32 1 1.2918 -0.7918 2.0190 33 1 3.1270 -2.6636 1.2760 34 1 1.4453 -2.7747 0.6572 35 1 2.6998 -2.7093 -1.3949 36 1 3.9059 -1.5736 -0.7163 37 1 1.9018 2.5461 -2.6434 38 1 3.6499 4.1148 -3.3624 39 1 8.5985 1.6182 -4.0209 40 1 6.0402 0.7874 -4.6966 41 1 4.2664 -0.7512 -3.9759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = -162.703145 kcal Electronic energy + Delta-G solvation = -29018.013318 eV Core-core repulsion = 24988.675220 eV Total energy + Delta-G solvation = -4029.338098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76252 -39.44000 -39.22610 -38.27618 -37.16203 -36.88677 -35.78684 -32.46403 -32.08971 -31.97699 -31.29828 -27.64064 -27.17613 -24.97935 -23.31736 -23.04597 -22.64594 -21.62507 -20.11632 -19.44650 -19.21313 -18.62435 -18.35610 -17.26976 -17.08898 -16.77003 -16.50246 -16.16677 -15.82387 -15.22917 -15.04135 -14.82407 -14.58524 -14.39787 -14.09620 -13.95913 -13.78697 -13.70120 -13.55697 -13.16926 -13.08608 -13.06903 -12.90806 -12.87952 -12.70417 -12.62085 -12.47534 -12.38339 -12.03112 -11.98434 -11.60689 -11.56018 -11.48468 -11.33742 -11.20174 -10.11732 -9.75026 -9.51672 -8.86204 -6.63121 -0.49113 0.50071 1.02425 1.08321 1.36148 1.42101 1.51827 2.00177 2.07491 2.12105 2.51742 2.87290 3.21235 3.41394 3.56219 3.69748 3.83518 4.18766 4.21949 4.22376 4.30693 4.47963 4.52734 4.76178 4.80151 4.85962 4.86409 4.92082 4.95742 5.02556 5.08768 5.17282 5.24478 5.29177 5.34117 5.44225 5.53092 5.55241 5.59908 5.78496 5.93935 6.15996 6.50155 6.69749 6.82030 6.88823 8.08625 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.004056 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.975853 B = 6900.895204 C = 7100.095543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.188 3.812 3 C 0.461 3.539 4 O -0.536 6.536 5 O -0.494 6.494 6 C -0.109 4.109 7 C -0.109 4.109 8 C 0.100 3.900 9 N -0.996 5.996 10 S 2.718 3.282 11 O -0.992 6.992 12 O -0.993 6.993 13 C -0.782 4.782 14 C 0.016 3.984 15 C -0.252 4.252 16 C 0.119 3.881 17 C -0.466 4.466 18 H 0.089 0.911 19 C 0.038 3.962 20 N -0.793 5.793 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.258 1.258 25 C -0.202 4.202 26 C -0.015 4.015 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.298 0.702 40 H 0.110 0.890 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -6.953 10.581 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.099 3.901 3 C 0.302 3.698 4 O -0.426 6.426 5 O -0.305 6.305 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.024 4.024 9 N -0.834 5.834 10 S 2.818 3.182 11 O -0.983 6.983 12 O -0.984 6.984 13 C -0.876 4.876 14 C -0.004 4.004 15 C -0.272 4.272 16 C 0.115 3.885 17 C -0.493 4.493 18 H 0.107 0.893 19 C -0.182 4.182 20 N -0.415 5.415 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.182 1.182 25 C -0.222 4.222 26 C -0.035 4.035 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.274 0.726 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.508 -7.603 10.166 13.472 hybrid contribution 1.494 1.836 -0.642 2.452 sum -3.015 -5.767 9.524 11.535 Atomic orbital electron populations 1.22496 0.90226 1.05154 1.05122 1.20894 0.95770 0.84205 0.89267 1.24533 0.79278 0.93060 0.72916 1.90665 1.58241 1.48630 1.45047 1.84733 1.32935 1.37309 1.75560 1.22822 1.03039 0.95486 0.93454 1.22782 1.03796 0.95401 0.92819 1.22372 0.94903 0.87044 0.98078 1.58708 1.64967 1.39668 1.20049 1.00449 0.73484 0.72773 0.71455 1.93445 1.44673 1.73748 1.86401 1.93455 1.87637 1.48302 1.68990 1.29449 1.18796 1.08797 1.30580 1.20077 0.95587 0.91592 0.93166 1.21137 0.97429 0.98221 1.10431 1.18098 0.91795 0.93010 0.85589 1.20188 0.92407 0.98881 1.37833 0.89277 1.26917 1.01407 0.95948 0.93900 1.69844 1.20890 1.20710 1.30092 0.85119 0.76721 0.78670 0.78874 1.18202 1.18749 1.18208 1.21287 0.99313 0.93848 1.07746 1.20346 0.91514 0.98147 0.93499 0.88070 0.88956 0.91521 0.72558 0.89731 0.86215 0.86510 0.88443 0.89347 0.91175 0.88135 0.87415 0.89083 0.87220 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 7.87 71.98 0.57 -3.80 16 2 C 0.19 5.01 0.86 3.21 0.00 5.01 16 3 C 0.46 14.82 6.50 71.24 0.46 15.28 16 4 O -0.54 -19.39 16.86 21.97 0.37 -19.02 16 5 O -0.49 -16.25 10.09 -51.43 -0.52 -16.77 16 6 C -0.11 -1.85 6.02 31.78 0.19 -1.66 16 7 C -0.11 -1.51 7.07 31.91 0.23 -1.29 16 8 C 0.10 2.29 7.09 86.78 0.62 2.91 16 9 N -1.00 -29.90 2.89 -467.12 -1.35 -31.25 16 10 S 2.72 106.50 5.60 -56.49 -0.32 106.18 16 11 O -0.99 -41.91 14.26 -128.00 -1.83 -43.74 16 12 O -0.99 -42.08 16.58 -128.00 -2.12 -44.20 16 13 C -0.78 -34.62 5.28 22.46 0.12 -34.50 16 14 C 0.02 0.71 7.02 22.22 0.16 0.86 16 15 C -0.25 -11.81 9.80 22.73 0.22 -11.59 16 16 C 0.12 6.02 5.57 -21.29 -0.12 5.90 16 17 C -0.47 -22.90 9.05 23.46 0.21 -22.69 16 18 H 0.09 4.17 7.91 -2.91 -0.02 4.14 16 19 C 0.04 1.73 5.14 85.26 0.44 2.17 16 20 N -0.79 -37.26 10.97 21.83 0.24 -37.02 16 21 Si 0.99 34.14 29.59 68.60 2.03 36.17 16 22 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 23 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 C -0.20 -10.19 8.70 22.73 0.20 -9.99 16 26 C -0.01 -0.70 9.49 22.22 0.21 -0.49 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 2.06 7.86 -2.38 -0.02 2.04 16 29 H 0.07 2.17 5.60 -2.39 -0.01 2.16 16 30 H 0.41 12.15 9.04 -74.05 -0.67 11.48 16 31 H 0.08 1.44 7.85 -2.39 -0.02 1.42 16 32 H 0.12 1.38 7.83 -2.39 -0.02 1.36 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.98 7.78 -2.39 -0.02 1.96 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 4.31 7.51 -2.91 -0.02 4.29 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.30 12.46 8.30 -92.70 -0.77 11.69 16 40 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 41 H 0.11 4.82 7.60 -2.91 -0.02 4.80 16 Total: -1.00 -66.67 347.70 0.42 -66.26 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.41 Total: 37.27 kcal Atomic # 6 Polarization: -57.37 SS G_CDS: 3.50 Total: -53.87 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.11 Total: -68.27 kcal Atomic # 8 Polarization: -119.64 SS G_CDS: -4.10 Total: -123.73 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Atomic # 16 Polarization: 106.50 SS G_CDS: -0.32 Total: 106.18 kcal Total: -66.67 0.42 -66.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.448 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds